LOC110520192 (nlrc5)


Basic Information

Item Value
gene id LOC110520192
gene name nlrc5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27447044 ~ 27467451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520192
ATGTCTACTGCAGAGGTGGAAGATGGTGATGCAGGCTGGATCTTTGATGGCTACAATGAGTTTCAAACTAAAATCACCCACTCAGGGAGTCTGAGTAGCCCGTTCGACCCACAGTGCCCTCTACCCATGGCAGAGCTGATATCAGGGTTGTGCAGTCGCAGGATCCTCCCAGGATGCACCCTATTGATTACCTGGGATGTGACAGATTTGGAGAGCTCTGTTGACTGCGTTGGGGAGCTGCTAGGCTTCAATTGGCGCAGTGTGAAAGAATATGCTGAACAGTACTTCCAGGACAAGGATCTGGATCTAAAGGAGAAGGTAGTCAGTCACCTACTGGCCAACCATCACCTCCTCACCATGTGTTACCTGCCAGCTCTCTGCCATATTTGCTGTGTGTGCTTGGATCACATATTCTCCAGAGGTGGGTCTCAGTCCCAGGCTTTGCCCCAACTGCCAACCACCCTCACCCAGGTCTACCTCCAGATCCTCTGTGCCTTTCTGAGCCAATGCCCAGGGAGGGTCATGCCCTTGTTGCAGAGTCACAGGGCAGAGGTCACACAGCTGAGCTGCATGGCCATGAAGGGTCTGGAGGACAGCAGGATCGTGTTTCTCTCTGAGCAGGTTCCACCAGACCTGTTGGACTTCGTCACCAAGGCAGGTCTCCTCTCACAGGTGGACCTGACACATGTGGATGGATCTAAAGGCCAGGGTTACACGTTCATGCACCTCACCATGCAAGAGTTTATGGGTGCGCTACACATCATGACCAGCGAGGACATCACAGAGGCCCAGCTTAGGAAGAAGTTGAACCTCAAGACCCACTGGACCATGAAATCAGACCCCAAGACGGTCTTCACTGATTCCCTCCACCTCTATGTGTAGGGCTTGCGGCCCCAGCCTGCTCTCCTTACCTGTTCCAGCTGGTTGAGGGAGCAGGGGCTGTGAGGTGGGTAAAGAAACGCCAGGCACTGGTTCTCAAATTGCTCCGGAGTCTGGCAGTGAGCACCAACCTGACTGGGCTCAAGGTAGTGGAGCTGTGCCACTGTATCCAGGAGACCCAGGATGCACACCTGGCCAGGGAGGTGGTGAGATCACATTCATGCTTTGAGGTAAGGAATATCACGTTGAACCCTGTAGATCTGGATTCCCTGGCCTTTGTTGTATTGTCTGCTGGAGTGGGAATGGGTCTGGACTTTGGAGCTTGTTCTATGGAACTAGAGTGTCTAGATATTCTACCCAGCTGCCAGCACATCGACTACCTAATGGGTAACCTGTGCTTCAGTGACAACAGCCTGACCGACAGAGAAGTCGGGGAGATCGCTGACCTCATTCAGAAGCTGCCCAGTCTAGCCTCTATCTTGCTGGGGAAGAATGGCTGCTCTCTGGAGATTATCTACACCCTTCTAGAGAAGATGATTTCCTGCCCCTCCATCCAGGAAGTCTATACTGATCTGTCAGAAGACGACATCAAGGCTGGTACTCTCAAGGCCCTGACTGACTCTCTACAGAAGCTGAACGTCTCCAAACAAATTGTTCTGAATGACAGCCACATATCTGTTGATGGGCTGATGATTCTGACCTGTttcctgtctgtatgtcctgATGTGGTTCAAGTGGACATCAGTCTGACGGGCTGTGCTCTTCGCCCCCCTCACTTGGACCGTCTGTGTGAGAATCTGAGGGACTGCTCTGCTCTGACTATGCTGGAagttttttttaaaaatcggTCACATCTTATATTGAGTTCTTTCAAAactcatgtatgtatgtatgcatgcatgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgtctgcctgtctgcctgtctcctctgCAGACTCTCTGAGTACACACTGAGCAGTGGGGATGTGGAGATACTCTCTGGGATCCTGGAGCAGTGTCCTCATCTGTCTGACCTGGATTTATCCAGTAACCTTCTGAGAGACGAGGGAGTGAAGAGATTTGTGGATTCTCTGCCAAGGCTGCGGATTGCTAGCTCAGTGAATCTTGATGATAACAGACTCACTCAGATGGGGGCTCTCTACATTCTGAACACAGTGACGACCTGTGAAAAAGTGGTTGAAGTGGATGTAAGtttggGAACTGAGAAGAGGACGCTCATCCGCTTTGAACTGGACAGTGACTGTGGCAAAACTCTGAGTCTGAGAGAGTGTCATTTTGGGGCTGACCATCTGCAGAAACTAGCAGAGATTCTGAAGAGCTGTGCTGCTCAGTTGGTCAAACTGAGGTTATCCTGTAACACCATGCAGAGAGAAGGCCTTTTGGCTCTACAGAACAGCCTGACTGCCCTGTCCTCATTACACACCCTGGATATAAGAAACAACGGCCTGAGTGTTCAGGTGATTGAAGACTTGGTGAAGCAGCTGAGGTGTGTTCATGTCCAACGCTATATCAGTATTGAGGAGACGTGGATCACAGCAGAAGCAGCTGTTAACCTGGTCTCCTGCTGCTTGAACCTGAACCACAACATACACACCATCAGGGTAAACCACACCACTGTACACATTACTTTGGAAAAACACACAAATCACACTCCTACCAGTGGTGATTCTGCAGACATGGCTAGCTCTCTGTCTACCGTGACCATCAGGTGAAAGCAGCCTCCTCTGTTATTCCTACATCAACAGGAATGTGTTTTGCCACACAACAGCATCGGTAGAGTGGGAGCAGAGTTGCTCTGCTCTGTCCTACCATCCTTAGTTAGTCTGAGGAAACTCTGTCTTGAGTCAAAAGAAACATCTGAAGATGTGGTATTGCTCCTTGCCGAGGGGTTGTTGCAGGCTAAAAGCATTGAGAGCTTGAATTCTTCTGGTCATGTGATCAGTGACAGAGGAGCTGTAGTTCTGACCAGAACACTCCAGAACCTACCAAATATCAGAACAATCAATCTGTCCCTGTGCTCTGGTTGGACAGCTGAAGGAGCATTGGACCTGGTCAAAGGGCTTGGACAGTGTCTCTCTCTGGAGGGGATCAGCCTTGACTCTGCACAGCTGGATCAAGAGAGCCCAGTCTccttggcacagggactatgactTTCTTGAAGAGGCTAAAGGGAGGGGACCACACTGGTCCTACTGGCCTCTCTGGAGGGGCTCAGAGCAATGGAGGAGATTGAGTTGGAGGGGATGAGGATGTCAGATAAAGGAGTGGAGGAGCTTATCAAACACCTACCCACCTGGACAGGCCTGAGGAAGATCAGCCTGTCAGATAACTATATTGGTGACCAAGCAGGAGAGAGGCTGATCCAGACCCTGGCTAACTGCACAGAACTGGAGGTACTCCAAGAACCTGATTGGTAGAGAAGGATCTGTCAGTATCTCCAATGCTCTGATCTTCATGAAGTATTTTAAAAAGATACACTTGACCTCCATAGGGACTTCAGAGCTCTCTGGTCTAGCTGCTAGCTTGGCTTGCTGTGTCTGTGCAGAGGATGTCAG

Function

symbol description
nlrc5 Predicted to be involved in intracellular signal transduction; negative regulation of type I interferon-mediated signaling pathway; and positive regulation of macromolecule biosynthetic process. Predicted to be active in nucleus. Orthologous to human NLRC5 (NLR family CARD domain containing 5).

NR:

description
PREDICTED: protein NLRC5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520192 True 3494 mRNA 0.51 28 27447044 27467451

Neighbor

gene id symbol gene type direction distance location
LOC110520152 cpne2 coding downstream 1675 27405059 ~ 27445369 (-)
LOC110520144 rspry1 coding downstream 54463 27375840 ~ 27392581 (-)
LOC110520135 ar2bp coding downstream 71591 27373262 ~ 27375453 (-)
LOC110520123 LOC106573712 coding downstream 105038 27332548 ~ 27342006 (-)
LOC110532131 aars coding downstream 125918 27316672 ~ 27321126 (-)
LOC110520201 NA coding upstream 18034 27485485 ~ 27486881 (-)
LOC110520206 herpud1 coding upstream 23093 27490544 ~ 27498055 (-)
LOC110520211 nup93 coding upstream 40150 27507601 ~ 27544963 (-)
mt2 NA coding upstream 83884 27551330 ~ 27552061 (-)
LOC110520267 LOC106573725 coding upstream 98905 27566356 ~ 27575092 (-)
G28033 NA non-coding downstream 42321 27403854 ~ 27404723 (-)
G28024 NA non-coding downstream 95389 27351305 ~ 27351655 (-)
LOC110532124 LOC104966864 non-coding downstream 183743 27226163 ~ 27299859 (-)
G27969 NA non-coding downstream 214514 27223487 ~ 27232530 (-)
G27481 NA non-coding downstream 309714 27137100 ~ 27137330 (-)
G28074 NA non-coding upstream 37952 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 79075 27546526 ~ 27546794 (-)
G28112 NA non-coding upstream 94494 27561945 ~ 27562365 (-)
G25117 zfpm1 other downstream 2165026 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2166014 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2495657 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2508343 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2582210 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 168637 27631001 ~ 27781768 (-)
G28870 NA other upstream 589992 28057443 ~ 28066305 (-)
G29355 NA other upstream 1236436 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1812825 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3664442 31131151 ~ 31132900 (-)

Expression


Co-expression Network