LOC110520201


Basic Information

Item Value
gene id LOC110520201
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27485485 ~ 27486881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472956.2
AAGGTTAGCCTCAATCCATCCCCCATCTCCCTGGAGGTGTTTTCtgttccctccctcttcctccgcTTGTCTGTTCGGCTCAACACAGCCTGGATCAGTGGCAGGTTTCTGAGGAGACACTACACAGCTCTGGGATCCAGTTTGATCCAGTTTGAAGTCAGTATTAATTTAGCTTCTTGTGTGATGGATAAGTGTTTGATGACACTCCCAGTCCTGCTGCTGTTCCTGGGCCTGGTTGGGATATCCCGCTCCTGTCTGAATCCTGTCTCTGCACACAGATTCACTGGGGCTGTCTGTAGGCTGACCTACTCTGCAGCAGTGGTCTTAAATGAGAAGACCACCAAGGTGATCCAGGCTGCATTCCAGCATGAACAGCGAGAAGTCTATTCTCTTTGTTGGAAAGGTTAAATATGGGCTTACCATGTGAGTGGACCTCTCTCCTTCCACAGTCAGCACACCAGCACCACATTCTGGAGATCCATAACCTGTCGATTGGGCAGAGTGAGTTTGAGCTGAAGCCAGGTAAAGGCACTGAGATTGCTATCTCCAAAGTGTCTGCTGTTTCCAAGGGAACCATCCAGTATGAAAATGGCAGCTGGCTGTGAGTCCTTCCATCAATCACTGTAACCGGGGAGGATGACACTGAGCGGGAAAAAGATGGAACTAGTGTTGATCAGTTTATGTTCAGATTTTTAATATACATTTCTGTGAGTTTTAATGTTATGTTGTATTTTAACCAAATATCCTGGTATGTAGGCTACTACTAAGGCTTGTATGTTGACCTTAGATAACTGTGTGCTGGTGACACTGCCATGTGTCACTGTTTGCAGTGTCAACGTGGGACATTCAGTAGATTTTGAAATTGAGTCACATATTGATCTCGGCATTAATCCCAAACTTTGTAAGTACATTTTTCTGTCCATTGTTTTTGTAGTTTTCAATGTTcactctcattctcattctcctcAAGAGTTGAAAGGAATCTTATAAACAGAGTTTTATTGTGA
>TU32169
GAGACACTACACAGCTCTGGGATCCAGTTTGATCCAGTTTGAAGTCAGTATTAATTTAGCTTCTTGTGTGATGGATAAGTGTTTGATGACACTCCCAGTCCTGCTGCTGTTCCTGGGCCTGGTTGGGATATCCCGCTCCTGTCTGAATCCTGTCTCTGCACACAGATTCACTGGGGCTGTCTGTAGGCTGACCTACTCTGCAGCAGTGGTCTTAAATGAGAAGACCACCAAGGTGATCCAGGCTGCATTCCAGCATGAACAGCGAGAAGTCTATTCTCTTTGTTGGAAAGGTTAAATATGGGCTTACCATGTGAGTGGACCTCTCTCCTTCCACAGTCAGCACACCAGCACCACATTCTGGAGATCCATAACCTGTCGATTGGGCAGAGTGAGTTTGAGCTGAAGCCAGGTAAAGGCACTGAGATTGCTATCTCCAAAGTGTCTGCTGTTTCCAAGGGAACCATCCAGTATGAAAATGGCAGCTGGCTGTGAGTCCTTCCATCAATCACTGTAACCGGGGAGGATGACACTGAGCGGGAAAAAGATGGAACTAGTGTTGATCAGTTTATGTTCAGATTTTTAATATACATTTCTGTGAGTTTTAATGTTATGTTGTATTTTAACCAAATATCCTGGTATGTAGGCTACTACTAAGGCTTGTATGTTGACCTTAGATAACTGTGTGCTGGTGACACTGCCATGTGTCACTGTTTGCAGTGTCAACGTGGGACATTCAGTAGATTTTGAAATTGAGTCACATATTGATCTCGGCATTAATCCCAAACTTTGTAAGTACATTTTTCTGTCCATTGTTTTTGTAGTTTTCAATGTTcactctcattctcattctcctcAAGAGTTGAAAGGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043691 reverse cholesterol transport biological_process
GO:0034364 high-density lipoprotein particle cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472956.2 False 1007 mRNA 0.45 3 27485485 27486881
TU32169 True 868 lncRNA 0.44 3 27485511 27486768

Neighbor

gene id symbol gene type direction distance location
LOC110520192 nlrc5 coding downstream 18034 27447044 ~ 27467451 (-)
LOC110520152 cpne2 coding downstream 40116 27405059 ~ 27445369 (-)
LOC110520144 rspry1 coding downstream 92904 27375840 ~ 27392581 (-)
LOC110520135 ar2bp coding downstream 110032 27373262 ~ 27375453 (-)
LOC110520123 LOC106573712 coding downstream 143479 27332548 ~ 27342006 (-)
LOC110520206 herpud1 coding upstream 3663 27490544 ~ 27498055 (-)
LOC110520211 nup93 coding upstream 20720 27507601 ~ 27544963 (-)
mt2 NA coding upstream 64454 27551330 ~ 27552061 (-)
LOC110520267 LOC106573725 coding upstream 79475 27566356 ~ 27575092 (-)
LOC110520275 LOC106573726 coding upstream 88866 27575747 ~ 27610097 (-)
G28033 NA non-coding downstream 80762 27403854 ~ 27404723 (-)
G28024 NA non-coding downstream 133830 27351305 ~ 27351655 (-)
LOC110532124 LOC104966864 non-coding downstream 222184 27226163 ~ 27299859 (-)
G27969 NA non-coding downstream 252955 27223487 ~ 27232530 (-)
G27481 NA non-coding downstream 348155 27137100 ~ 27137330 (-)
G28074 NA non-coding upstream 18522 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 59645 27546526 ~ 27546794 (-)
G28112 NA non-coding upstream 75064 27561945 ~ 27562365 (-)
G28113 NA non-coding upstream 75626 27562507 ~ 27562707 (-)
G25117 zfpm1 other downstream 2203467 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2204455 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2534098 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2546784 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2620651 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 149207 27631001 ~ 27781768 (-)
G28870 NA other upstream 570562 28057443 ~ 28066305 (-)
G29355 NA other upstream 1217006 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1793395 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3645012 31131151 ~ 31132900 (-)

Expression


Co-expression Network