LOC110520206 (herpud1)


Basic Information

Item Value
gene id LOC110520206
gene name herpud1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27490544 ~ 27498055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597364.2
AAGCCACAATGTGTTTCCAAACAACCCTCCTTTTCACTCGACAGGCTGCGTCAACCACTTCCTCATTTCAACTAAAAAGTTTTCAGGTGAAGAAATTGATTGCTACTTTGTATCTGACATTTCGGATGATCATATACTGTAGTTACTCACTCCGTTGATATTATTACTTGATAGCTAAGAGGCTACATTGTAGCTACTACTTAATCGCGTTGGGAGAGGTCACAAGAAAATAAACATGGACAATACTGGTTTTCCTAGACAAAAAACAATCAAGCTTGTGATAAAAACACCTAATCAAGCCCACGGGGATCAAACGATTGAAGGAGTTGACATGGACTGGTCAGTGAAAGAGTTGAAGACACATTTGTCGAGAATGTACCCAAACAACCCGGCTGAAAGTGATCAGAGACTAATTTACTCTGGCAAGCTGCTCCCAGACCACCTGCATGTAAGAGATATTTTCAGAAAGACGGACCTAACACCCACTGTGCACCTGGTGTGTGCAGTAAGGACTCAGCCTATAGGTCCACTAGGAGCAAGACCAAAGGTCAGGGAATCAGAGCAGCAAGAGGCACAAACATCGGCCATGCCTACCGGTCAGAACCCAGAGGGTGCCTCCCGAGCCCCATCTGTGCCCACTGATCTAGAACCGAGACTGCGCAGGCCCCCTGCCCCCTCTCACACCCCACCAGCAGCTGCATGGCCTGGCGCTACAGCGCTAGTGGCAGCAGAGATGACAAACCCAACCTTCCCCACTTACTCCCTCTACAGCCCTCAACAGCTTCTCTGGCTGCAGCACATGTATGCTCGCCAGTACTACATGCAGTACCATGCAGCCtacgcagcagcagcagcctctgcCCCCTTTGCCCCAGCCGCCGGCCCATCCCTGCCTGTCGCACCCCACCAAGCCGCTATCCCAGCAGCCctgccagccaatcagaatgcacAGGACGCCGCCTTCATCAACCCGGGAGCAGCCAATCAGAACCTGCGGATGAACGCCCAGGGCGGACCTGtgatggaggatgaggaggatatCAATCGGGATTGGCTTGACTGGGTGTACACGGCTGCACGTCTGGGTGTCTTCCTCAGCATCGTCTACTTCTACTCCAGCCTGAGCCGCTTCGTCCTGGTCATGAGCAGCCTCCTCCTTATGTACCTgcacACAGCAGGCTGGTTCCCCTTCAGGAGAAGGCCCCTGGTCAGAGGTCCCAACAACCAGGTCCCCGAGGTCATCCAGAACCACCAGGACAGGAACCCAGTTCCACCTatGGAGGACCCTGCAGGAGAAGAGGGGGCCGGGGCGGAGGCTGAGGTTGATGAACCACACCCCCTGACTGCAGTGCTGGTGCCTCCACACAGGGTGTCCATCGTTTGGACTGCCTGGATCTTTTTCAAAGCCTTCTTTGCCTCTCTCGTCCCAGAGGccctagcagtggctaactgaatTATCAACTTTTCCAGCAGGGGGCACACTGGTGCTGAATTTACCCTGAGAATTAGACTTGCCTCTGTCACGGGAAGTCCTCCCTCTTTGGACCTCTGGATAGTAGATGCCTGGACTATTTGTGAGAAATCCTGAATGATTTAGGGATTCAATGCATACAAATccctgcctgtagtctgttgtgtgtgtttagggaTATGGTGGTTCATTCGGCACTTCCTGCCTTATGATAGTGACCAAATGGTTGTATATGCAGTATATTACATACACTTCTCGCTGCCAAATGGTTGTATATACTGTAAATGAGTATTGGAACTAAAAATGTAAATATTATTCTATTGTCTgtgtaacagggttggttatgtttccacttgaCACTGCAGAAACCTGTATTTTGATTGTGTATTCCTATTGGTTGGTTAAATGTACATATCAGTAAGTTGTTATGCCATTGGTCATGCTTGCAGATAGGGAGAGATCGCAAACTTCAATTCTTTCCAGTCTGATATTGACATTCAGGTGGTAGGCCACGTTCTGAAATTACTGTATTCtattttcatatttacaatgtgtaGGAGTTCACtatgtacagtacctgtcaaaaggtgaggcaca

Function

symbol description
herpud1 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in several processes, including endoplasmic reticulum calcium ion homeostasis; endoplasmic reticulum unfolded protein response; and regulation of response to endoplasmic reticulum stress. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human HERPUD1 (homocysteine inducible ER protein with ubiquitin like domain 1).

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein

GO: NA

KEGG:

id description
K14027 HERPUD1, HERP; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597364.2 True 2068 mRNA 0.50 8 27490544 27498055

Neighbor

gene id symbol gene type direction distance location
LOC110520201 NA coding downstream 3663 27485485 ~ 27486881 (-)
LOC110520192 nlrc5 coding downstream 23093 27447044 ~ 27467451 (-)
LOC110520152 cpne2 coding downstream 45175 27405059 ~ 27445369 (-)
LOC110520144 rspry1 coding downstream 97963 27375840 ~ 27392581 (-)
LOC110520135 ar2bp coding downstream 115091 27373262 ~ 27375453 (-)
LOC110520211 nup93 coding upstream 9546 27507601 ~ 27544963 (-)
mt2 NA coding upstream 53280 27551330 ~ 27552061 (-)
LOC110520267 LOC106573725 coding upstream 68301 27566356 ~ 27575092 (-)
LOC110520275 LOC106573726 coding upstream 77692 27575747 ~ 27610097 (-)
LOC110520292 gnao1 coding upstream 132946 27631001 ~ 27781768 (-)
G28033 NA non-coding downstream 85821 27403854 ~ 27404723 (-)
G28024 NA non-coding downstream 138889 27351305 ~ 27351655 (-)
LOC110532124 LOC104966864 non-coding downstream 227243 27226163 ~ 27299859 (-)
G27969 NA non-coding downstream 258014 27223487 ~ 27232530 (-)
G28074 NA non-coding upstream 7348 27505403 ~ 27506148 (-)
G28106 NA non-coding upstream 48471 27546526 ~ 27546794 (-)
G28112 NA non-coding upstream 63890 27561945 ~ 27562365 (-)
G28113 NA non-coding upstream 64452 27562507 ~ 27562707 (-)
G25117 zfpm1 other downstream 2208526 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2209514 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2539157 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2551843 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2625710 24853824 ~ 24865158 (-)
G28870 NA other upstream 559388 28057443 ~ 28066305 (-)
G29355 NA other upstream 1205832 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1782221 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3633838 31131151 ~ 31132900 (-)

Expression


Co-expression Network