LOC110520211 (nup93)


Basic Information

Item Value
gene id LOC110520211
gene name nup93
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27507601 ~ 27544963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597398.2
ggcaGGCTGAGCCACAGCATGAGGCTTTCTGAAGAATGAGAGGGACAATGCGCTGCTCTCTGCAATCGAGGAGTCACGTCGCAGGACGTTCCTCCTGGCAGAGGAGTACCACCGTGAGTCCATGCTGGTTCAGTGGGAGCAGGTGAAGCAGAGAGTACTGCACACCTTGCTGGGAGCAGGGGAAGATGCTCTGGACTTCAGCCAAGACGTAGAGCCCAGCTTTGTGAGTGACGCAGGGACTCCTGGGCGGAGTGCTCTTGACAGCGTGGAGGTAGCCTATGGACGACAGATCTACGTCTTCAATGAGAAGATAGTGAACGGACACGTCCAGCCCAACCTGGGAGACCTCTGTGCTTCAGTGGTAGACAGCCTGGATGACAAGAACGTGTCAGATATGTGGCTGATGGTGAAGCGGATGACAGACGTGCTGCTGGTCCCAGCCAAAGACACGCTGAAGAGCCGCACGTCTGTGGACATGCAGATGGCTTTCGTCACGCAGGCCCTGCAGTTCCTGGAGAACAGCTACAAGAACTACACCATGGTAACAGTGTTTGGGAACCTGCTCCAGGCCCAGCTGGGCGGAGTCCCTGGCACCTATCAGCTGGTGTGCAGCTTCCTCAACATCAAGCTACCAGGGCCTCTGCCAGGCATGCAGGATGGTGAGGTGGAGGGTCACCCAGTCTGGGCTCTGATCTACTACTGCCTGCGCTGTGGGGACCTGGGGGCTGCCATGCAGGTGGTGAACCGGGCTCAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAATATATGAACAGCCCTGACAGACGCTTGGCCCCTGCCACAGAGAACAAGCTGCGTCTCCACTACCGCAGAGTGCTGAGGAACAGCGCTGACCCCTACAAGAGGGCCGTCTACTGCCTCATTGGGAAGTGTGACATCGCAGACAACCATGGAGAGGTGGCCGACAAAACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGCTTCGATGACGACGGCAGCAGTGCTCCTCAGGACAAACTGACACTGGCCCAGCTACAGAAACAACTTCTAGAGGACTACGGAGAGTCCCACTTCTCAGCCATCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTCACGGCCCAGTTTGAGGCTGCTGTGGCCTTCCTGTTCCGGGTGGAGCGTCTACGCAGTCATGCTGTTCACGTGGCTCTGGTTCTCTACGAGCTAGGGCTGCTGCTCAAGTCATCTGGACAGAGTGCACAACTGTTGAGTCAGGAGGCTGGGGACCCCCCTATGGTCCGACGGCTCAACTTCATCCGTCTCCTCATGCTCTACACACGCAAGTTTGAGTCCACAGACCCCCGGGAAGCGCTACAGTACTTCTACTTCCTACGGAATGAAAAAAACAGCCAAGGAGAAAACATGTTTATGTGCTGTGTTAGCGAGCTGGTGATTGAGAGTCGAGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGCAGCAGGAAGCCTGGAGTGATTGATAAATTTGCCGGAGACACGCGAGCCATTATCACAAAAGTGGCGCTGGAGGCAGAGAACAAGGGCCTGTTTGAGGAAGCAGTCAAACTGTATGAGCTGACCAAGAATCCAGACAGGGTCCTGGAGCTGATGAACAGGCTGCTGAGTCCTGTTATTGCCCAAGTGGGCTCCACCCAGTCCAATAAGGAGAGACTGAAGAACACTGCTGTTGCCATCGCTGAGCGGTACCGGACCCAGGGTGTTGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTGCTGCTGGACCTCATGACCTTCTTTGATGAGTACCATGTTGGTCACATAGACCAAGCCTACGATgTTATGGAGAGACTGAAGCTGGTCCCTCTGAGTCAGGACAGTGTGGAGGAGAGGGTCGCTGCATTCCGTAATTTCAGTGATGAGGTCAGGCATAATTTGTCGGAGGTTCTCCTGGCCACCATGAACATCCTGTTCATGCAGTACAAACGTCTGAAGGGCGCCACAGCAGGAGCCCCTGGTCGACCACAGAGATCCATGGAGGACAGAGACTCGCAACTGCGCAGCCAGGCTCGAGCACTGATCACGTTTGCTGGGATTATCCCATACCGAATGGCAGGCGACACCAATGCCCGGCTGGTGCAGATGGAGGTCCTAATGAACTGACTCCAGAATACCCCAAAGCCCCAGCCATTACCCACCCTTCTCATCAACTGTCTGATTTATTTGATTTCTTTCAGCATTTTTCCCATTTCTTTGTCCTTATGTTGTTccatatttgtattttttcataAATCTAAATAAAATGTCAGTTCAATTTAA
>XM_036974842.1
actttcTCGCCTCTAAACTTGGTTGCCATGGAAGCGGAGGGCTTTGGAGAGCTCCTGCAGCAGGCGGAGCAGCTTGCAGCGGAAACTGAGGCTGTGTCTGAGCTTCCCCATGTTGAGAGGAACCTTCAGGAGATCCAGCAGGCTGGAGAGAGGCTACGTTCCCGCACCTTAACCCGAACGTCGCAAGACGCTGCTGACGTAAAAGCCTCTATCCTCCTGGGTTCCAGAGGCCTGGACATATTCCACATCTCCCAGCGTCTGGAGAGCTTGAGTGCTGCCACTACCTTTGAACCTTTGGAGCCAGTGAAAGACACTGACATCCAGGGCTTTCTGAAGAATGAGAGGGACAATGCGCTGCTCTCTGCAATCGAGGAGTCACGTCGCAGGACGTTCCTCCTGGCAGAGGAGTACCACCGTGAGTCCATGCTGGTTCAGTGGGAGCAGGTGAAGCAGAGAGTACTGCACACCTTGCTGGGAGCAGGGGAAGATGCTCTGGACTTCAGCCAAGACGTAGAGCCCAGCTTTGTGAGTGACGCAGGGACTCCTGGGCGGAGTGCTCTTGACAGCGTGGAGGTAGCCTATGGACGACAGATCTACGTCTTCAATGAGAAGATAGTGAACGGACACGTCCAGCCCAACCTGGGAGACCTCTGTGCTTCAGTGGTAGACAGCCTGGATGACAAGAACGTGTCAGATATGTGGCTGATGGTGAAGCGGATGACAGACGTGCTGCTGGTCCCAGCCAAAGACACGCTGAAGAGCCGCACGTCTGTGGACATGCAGATGGCTTTCGTCACGCAGGCCCTGCAGTTCCTGGAGAACAGCTACAAGAACTACACCATGGTAACAGTGTTTGGGAACCTGCTCCAGGCCCAGCTGGGCGGAGTCCCTGGCACCTATCAGCTGGTGTGCAGCTTCCTCAACATCAAGCTACCAGGGCCTCTGCCAGGCATGCAGGATGGTGAGGTGGAGGGTCACCCAGTCTGGGCTCTGATCTACTACTGCCTGCGCTGTGGGGACCTGGGGGCTGCCATGCAGGTGGTGAACCGGGCTCAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAATATATGAACAGCCCTGACAGACGCTTGGCCCCTGCCACAGAGAACAAGCTGCGTCTCCACTACCGCAGAGTGCTGAGGAACAGCGCTGACCCCTACAAGAGGGCCGTCTACTGCCTCATTGGGAAGTGTGACATCGCAGACAACCATGGAGAGGTGGCCGACAAAACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGCTTCGATGACGACGGCAGCAGTGCTCCTCAGGACAAACTGACACTGGCCCAGCTACAGAAACAACTTCTAGAGGACTACGGAGAGTCCCACTTCTCAGCCATCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTCACGGCCCAGTTTGAGGCTGCTGTGGCCTTCCTGTTCCGGGTGGAGCGTCTACGCAGTCATGCTGTTCACGTGGCTCTGGTTCTCTACGAGCTAGGGCTGCTGCTCAAGTCATCTGGACAGAGTGCACAACTGTTGAGTCAGGAGGCTGGGGACCCCCCTATGGTCCGACGGCTCAACTTCATCCGTCTCCTCATGCTCTACACACGCAAGTTTGAGTCCACAGACCCCCGGGAAGCGCTACAGTACTTCTACTTCCTACGGAATGAAAAAAACAGCCAAGGAGAAAACATGTTTATGTGCTGTGTTAGCGAGCTGGTGATTGAGAGTCGAGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGCAGCAGGAAGCCTGGAGTGATTGATAAATTTGCCGGAGACACGCGAGCCATTATCACAAAAGTGGCGCTGGAGGCAGAGAACAAGGGCCTGTTTGAGGAAGCAGTCAAACTGTATGAGCTGACCAAGAATCCAGACAGGGTCCTGGAGCTGATGAACAGGCTGCTGAGTCCTGTTATTGCCCAAGTGGGCTCCACCCAGTCCAATAAGGAGAGACTGAAGAACACTGCTGTTGCCATCGCTGAGCGGTACCGGACCCAGGGTGTTGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTGCTGCTGGACCTCATGACCTTCTTTGATGAGTACCATGTTGGTCACATAGACCAAGCCTACGATgTTATGGAGAGACTGAAGCTGGTCCCTCTGAGTCAGGACAGTGTGGAGGAGAGGGTCGCTGCATTCCGTAATTTCAGTGATGAGGTCAGGCATAATTTGTCGGAGGTTCTCCTGGCCACCATGAACATCCTGTTCATGCAGTACAAACGTCTGAAGGGCGCCACAGCAGGAGCCCCTGGTCGACCACAGAGATCCATGGAGGACAGAGACTCGCAACTGCGCAGCCAGGCTCGAGCACTGATCACGTTTGCTGGGATTATCCCATACCGAATGGCAGGCGACACCAATGCCCGGCTGGTGCAGATGGAGGTCCTAATGAACTGACTCCAGAATACCCCAAAGCCCCAGCCATTACCCACCCTTCTCATCAACTGTCTGATTTATTTGATTTCTTTCAGCATTTTTCCCATTTCTTTGTCCTTATGTTGTTccatatttgtattttttcataAATCTAAATAAAATGTCAGTTCAATTTAA
>XM_021597382.2
gaagAATAAAACGAGGCCTCATCCAATCAGACTAGACCTCAGAAGTGCCGGGGTAAAATGTATGTCCGACTGGAAAACAAATGAGATAAGCGCAAAAGAGTGAACAACTGTCATAACTACTATTTGTGGAACAAGGGAAAGGATAATTTGCTATCTAGGATTCATTGGTTGCCATGGAAGCGGAGGGCTTTGGAGAGCTCCTGCAGCAGGCGGAGCAGCTTGCAGCGGAAACTGAGGCTGTGTCTGAGCTTCCCCATGTTGAGAGGAACCTTCAGGAGATCCAGCAGGCTGGAGAGAGGCTACGTTCCCGCACCTTAACCCGAACGTCGCAAGACGCTGCTGACGTAAAAGCCTCTATCCTCCTGGGTTCCAGAGGCCTGGACATATTCCACATCTCCCAGCGTCTGGAGAGCTTGAGTGCTGCCACTACCTTTGAACCTTTGGAGCCAGTGAAAGACACTGACATCCAGGGCTTTCTGAAGAATGAGAGGGACAATGCGCTGCTCTCTGCAATCGAGGAGTCACGTCGCAGGACGTTCCTCCTGGCAGAGGAGTACCACCGTGAGTCCATGCTGGTTCAGTGGGAGCAGGTGAAGCAGAGAGTACTGCACACCTTGCTGGGAGCAGGGGAAGATGCTCTGGACTTCAGCCAAGACGTAGAGCCCAGCTTTGTGAGTGACGCAGGGACTCCTGGGCGGAGTGCTCTTGACAGCGTGGAGGTAGCCTATGGACGACAGATCTACGTCTTCAATGAGAAGATAGTGAACGGACACGTCCAGCCCAACCTGGGAGACCTCTGTGCTTCAGTGGTAGACAGCCTGGATGACAAGAACGTGTCAGATATGTGGCTGATGGTGAAGCGGATGACAGACGTGCTGCTGGTCCCAGCCAAAGACACGCTGAAGAGCCGCACGTCTGTGGACATGCAGATGGCTTTCGTCACGCAGGCCCTGCAGTTCCTGGAGAACAGCTACAAGAACTACACCATGGTAACAGTGTTTGGGAACCTGCTCCAGGCCCAGCTGGGCGGAGTCCCTGGCACCTATCAGCTGGTGTGCAGCTTCCTCAACATCAAGCTACCAGGGCCTCTGCCAGGCATGCAGGATGGTGAGGTGGAGGGTCACCCAGTCTGGGCTCTGATCTACTACTGCCTGCGCTGTGGGGACCTGGGGGCTGCCATGCAGGTGGTGAACCGGGCTCAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAATATATGAACAGCCCTGACAGACGCTTGGCCCCTGCCACAGAGAACAAGCTGCGTCTCCACTACCGCAGAGTGCTGAGGAACAGCGCTGACCCCTACAAGAGGGCCGTCTACTGCCTCATTGGGAAGTGTGACATCGCAGACAACCATGGAGAGGTGGCCGACAAAACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGCTTCGATGACGACGGCAGCAGTGCTCCTCAGGACAAACTGACACTGGCCCAGCTACAGAAACAACTTCTAGAGGACTACGGAGAGTCCCACTTCTCAGCCATCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTCACGGCCCAGTTTGAGGCTGCTGTGGCCTTCCTGTTCCGGGTGGAGCGTCTACGCAGTCATGCTGTTCACGTGGCTCTGGTTCTCTACGAGCTAGGGCTGCTGCTCAAGTCATCTGGACAGAGTGCACAACTGTTGAGTCAGGAGGCTGGGGACCCCCCTATGGTCCGACGGCTCAACTTCATCCGTCTCCTCATGCTCTACACACGCAAGTTTGAGTCCACAGACCCCCGGGAAGCGCTACAGTACTTCTACTTCCTACGGAATGAAAAAAACAGCCAAGGAGAAAACATGTTTATGTGCTGTGTTAGCGAGCTGGTGATTGAGAGTCGAGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGCAGCAGGAAGCCTGGAGTGATTGATAAATTTGCCGGAGACACGCGAGCCATTATCACAAAAGTGGCGCTGGAGGCAGAGAACAAGGGCCTGTTTGAGGAAGCAGTCAAACTGTATGAGCTGACCAAGAATCCAGACAGGGTCCTGGAGCTGATGAACAGGCTGCTGAGTCCTGTTATTGCCCAAGTGGGCTCCACCCAGTCCAATAAGGAGAGACTGAAGAACACTGCTGTTGCCATCGCTGAGCGGTACCGGACCCAGGGTGTTGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTGCTGCTGGACCTCATGACCTTCTTTGATGAGTACCATGTTGGTCACATAGACCAAGCCTACGATgTTATGGAGAGACTGAAGCTGGTCCCTCTGAGTCAGGACAGTGTGGAGGAGAGGGTCGCTGCATTCCGTAATTTCAGTGATGAGGTCAGGCATAATTTGTCGGAGGTTCTCCTGGCCACCATGAACATCCTGTTCATGCAGTACAAACGTCTGAAGGGCGCCACAGCAGGAGCCCCTGGTCGACCACAGAGATCCATGGAGGACAGAGACTCGCAACTGCGCAGCCAGGCTCGAGCACTGATCACGTTTGCTGGGATTATCCCATACCGAATGGCAGGCGACACCAATGCCCGGCTGGTGCAGATGGAGGTCCTAATGAACTGACTCCAGAATACCCCAAAGCCCCAGCCATTACCCACCCTTCTCATCAACTGTCTGATTTATTTGATTTCTTTCAGCATTTTTCCCATTTCTTTGTCCTTATGTTGTTccatatttgtattttttcataAATCTAAATAAAATGTCAGTTCAATTTAA

Function

symbol description
nup93 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nuclear pore complex assembly; poly(A)+ mRNA export from nucleus; and protein import into nucleus. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane and nuclear periphery. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93).

NR:

description
nuclear pore complex protein Nup93-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14309 NUP93, NIC96; nuclear pore complex protein Nup93

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597398.2 False 2344 mRNA 0.54 19 27507601 27522504
XM_036974842.1 False 2646 mRNA 0.54 21 27507601 27543901
XM_021597382.2 True 2792 mRNA 0.54 21 27507601 27544963

Neighbor

gene id symbol gene type direction distance location
LOC110520206 herpud1 coding downstream 9546 27490544 ~ 27498055 (-)
LOC110520201 NA coding downstream 20720 27485485 ~ 27486881 (-)
LOC110520192 nlrc5 coding downstream 40150 27447044 ~ 27467451 (-)
LOC110520152 cpne2 coding downstream 62232 27405059 ~ 27445369 (-)
LOC110520144 rspry1 coding downstream 115020 27375840 ~ 27392581 (-)
mt2 NA coding upstream 6372 27551330 ~ 27552061 (-)
LOC110520267 LOC106573725 coding upstream 21393 27566356 ~ 27575092 (-)
LOC110520275 LOC106573726 coding upstream 30784 27575747 ~ 27610097 (-)
LOC110520292 gnao1 coding upstream 86038 27631001 ~ 27781768 (-)
LOC110520323 LOC106573733 coding upstream 305589 27850552 ~ 27978660 (-)
G28074 NA non-coding downstream 1453 27505403 ~ 27506148 (-)
G28033 NA non-coding downstream 102878 27403854 ~ 27404723 (-)
G28024 NA non-coding downstream 155946 27351305 ~ 27351655 (-)
LOC110532124 LOC104966864 non-coding downstream 244300 27226163 ~ 27299859 (-)
G28106 NA non-coding upstream 1563 27546526 ~ 27546794 (-)
G28112 NA non-coding upstream 16982 27561945 ~ 27562365 (-)
G28113 NA non-coding upstream 17544 27562507 ~ 27562707 (-)
G25117 zfpm1 other downstream 2225583 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2226571 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2556214 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2568900 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2642767 24853824 ~ 24865158 (-)
G28870 NA other upstream 512480 28057443 ~ 28066305 (-)
G29355 NA other upstream 1158924 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1735313 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3586930 31131151 ~ 31132900 (-)

Expression


Co-expression Network