cfdp1 (cfdp1)


Basic Information

Item Value
gene id cfdp1
gene name cfdp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27984849 ~ 28033545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597599.2
CGATTGATCCTGTGGACGTGCCGTAGTAAATCAGGAAGTCAGATAAGCAAGCTACCATAGAATTACACAATGATCAATATAGATCCGCGCTCCTTTCTGTAGCTTGTCAACAAAGCCACACGTTTTCATATTTGTGAATACTTGTGTATTTGTTTGTTATTGTAATTGTAGCTATAATAAACTATACAGCTAGAAACATTTGTTAACTTTAACGGTTATTTAGTAACCGCGTGATAGCTACAGACAGGGTTCGTCAGATATCCGGTGCTTTGTAatttgctagctagccagttaTCCATCATACCTTTACTGCTGTGTTTACTAttgacagaaagtgtaggctctttCTGGAGGGGAAATGATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGAAGATCAAGACTATGTCCCATCTGATGACAACCTCAGTGAAGATGACATGAATGAATGTGTGAAAGAAGATGGTCTGGAAGGGGATGACCAGCATGGACAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAAGACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACAGAGCAGGATGGCAGTGTGGAGGAGCAGGAAGAAGGAGAGTTTTCTGATTCCAGGCCCAAGAAGGAGGTGGACgaagaaaaaaagaagaagaaagcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCCCAAATCCAAGCCATCTATTCCATCACCACAGTCTACCACTAAACAGCAGGCTGCACCCACAGACAGACCGAAGAAGTCCACTGAGGCCCCATCAGAACGTCATCATTTAGAGCATAACTCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTCTTTGACTTTGCTGGGGAAGAGGTCCGAGTAACCAAAGAGGTAGATGCTGACTCCAAGGAGGCCAAGTGCTTTCTGAAGTCCAAGGAGGAGACACCAGATGTGTGGACTATACCCAGCAGACCAGAGCCCTCCTCCCTCGCCCCTGGACCCAGTGTGAAGAGGCCTGCAGGGATGGGCAGCATCCTGAACCGCCTCGGGGGGAAGAAACAGAAGATGAGCACGTTGGAGAAGTCCAAGATGGACTGGGACGCCTTCAAGGATGAGGAGGGCATCGGGGACGAGCTGGCCATCCACAACCGAGGCAAAGAAGGGTATGTGGAGAGAAAGAATTTCCTGCAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTACGTCTCGGCAACATCATGAAGCGATGACAAGGAATAATAGAGGAGAGGTACGCTAACAATTGTGACACATGCGCGCACCACTCTGAACATGCCTGCCCAGTTCCCTCTCGTGTTTTCTCTTCCCAGTACTTGGCCTCTGGACTGCCCATGTGTTTGGAATGGCCCGACAGTACCTGCTACCTGCTGTTTTTGGACCTGCGTCAGATTTCACACTCCCAATCTACACACAGCACTCTCATTACACCTCCATCTGTTCCTGGACCTGCGTGTGACCCGAATCACCTAGACTCAGACCCCTGACTGTGTCTTCCTACCTCTATGAGAGGTGTGTTGGCAGTGTTAACCTGCTTACCTCAGCACATGGCTGTGTGGGTGTTCCTGTACTGAACATTTGTCAACATCATCACCAGGATGAAGAAAAGAAAGGAAAGCATTccaggagtgagaagaggagaaTGAGCAGCACAGTCATGATTCCACACCCTGAACTCTGTATCAGTCGTTATTGGCATTGActcgagagggaaagagatgaggAATCCACACACTGCTCAGATATTTGTGCCATCGCTCCACATCTCCTGCAGTGATTCGGGTTGGTATGCTGTTCATTGGAAGAGTTAAAGTTGCATTTCACCTCCCTGTTGTGCGGACTGCACTTCTCTGGATAAGTTCCAGCTAATCTGAGGAGAAAGATGTGTCTCACTCTGATGTACCTTAGTTATACCAATAACTATCACAGTTTCTGACATGATGCAAGATGAAAGATCTATGTTTCATGAACATGTCAGCTTAGCTGCTTCTTAAACCTGAGCTAAGAGGGGAGAGGATCACTGAGCGTTTCCTCAGCTACTGTTCTCCCAACGTAATGACACAGCTCCTATTACAAGGTAATTTTATGGTTGTTCAGTaacagacactcacacagacaggctAATTCAGGGACTTTATTTTTAGTTACAGGTTGTTAAATGAATGGGCTTCAAGTGTGTCTGAATAATAACGTCTCGTATTATTATGTCAGAATTTGGACTTGTGTTATGTTGTTATCctggtactgtactgtgtcaACTGTATAACATTGAATAAAGCACGCTATTTGGTTTGAAA
>XM_036974966.1
CGATTGATCCTGTGGACGTGCCGTAGTAAATCAGGAAGTCAGATAAGCAAGCTACCATAGAATTACACAATGATCAATATAGATCCGCGCTCCTTTCTGTAGCTTGTCAACAAAGCCACACGTTTTCATATTTGTGAATACTTGTGTATTTGTTTGTTATTGTAATTGTAGCTATAATAAACTATACAGCTAGAAACATTTGTTAACTTTAACGGTTATTTAGTAACCGCGTGATAGCTACAGACAGGGTTCGTCAGATATCCGGTGCTTTGTAatttgctagctagccagttaTCCATCATACCTTTACTGCTGTGTTTACTAttgacagaaagtgtaggctctttCTGGAGGGGAAATGATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGAAGATCAAGACTATGTCCCATCTGATGACAACCTCAGTGAAGATGACATGAATGAATGTGTGAAAGAAGATGGTCTGGAAGGGGATGACCAGCATGGACAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAAGACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACAGAGCAGGATGGCAGTGTGGAGGAGCAGGAAGAAGGAGAGTTTTCTGATTCCAGGCCCAAGAAGGAGGTGGACgaagaaaaaaagaagaagaaagcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCCCAAATCCAAGCCATCTATTCCATCACCACAGTCTACCACTAAACAGCAGGCTGCACCCACAGACAGACCGAAGAAGTCCACTGAGGCCCCATCAGAACGTCATCATTTAGAGCATAACTCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTCTTTGACTTTGCTGGGGAAGAGGTCCGAGTAACCAAAGAGGTAGATGCTGACTCCAAGGAGGCCAAGTGCTTTCTGAAGTCCAAGGAGGAGACACCAGATGTGTGGACTATACCCAGCAGACCAGAGCCCTCCTCCCTCGCCCCTGGACCCAGgGGTCCAGCATgctctcctcatggccacagacATCTGGAGGAGCTATCTACTCTCCCCGGGGATACTGTGAGAACATTCTTAAAGTTGAAGCGCCTCTGCGAGGCACAAAATGGTTCCCATGTGAAGAGGCCTGCAGGGATGGGCAGCATCCTGAACCGCCTCGGGGGGAAGAAACAGAAGATGAGCACGTTGGAGAAGTCCAAGATGGACTGGGACGCCTTCAAGGATGAGGAGGGCATCGGGGACGAGCTGGCCATCCACAACCGAGGCAAAGAAGGGTATGTGGAGAGAAAGAATTTCCTGCAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTACGTCTCGGCAACATCATGAAGCGATGACAAGGAATAATAGAGGAGAGGTACGCTAACAATTGTGACACATGCGCGCACCACTCTGAACATGCCTGCCCAGTTCCCTCTCGTGTTTTCTCTTCCCAGTACTTGGCCTCTGGACTGCCCATGTGTTTGGAATGGCCCGACAGTACCTGCTACCTGCTGTTTTTGGACCTGCGTCAGATTTCACACTCCCAATCTACACACAGCACTCTCATTACACCTCCATCTGTTCCTGGACCTGCGTGTGACCCGAATCACCTAGACTCAGACCCCTGACTGTGTCTTCCTACCTCTATGAGAGGTGTGTTGGCAGTGTTAACCTGCTTACCTCAGCACATGGCTGTGTGGGTGTTCCTGTACTGAACATTTGTCAACATCATCACCAGGATGAAGAAAAGAAAGGAAAGCATTccaggagtgagaagaggagaaTGAGCAGCACAGTCATGATTCCACACCCTGAACTCTGTATCAGTCGTTATTGGCATTGActcgagagggaaagagatgaggAATCCACACACTGCTCAGATATTTGTGCCATCGCTCCACATCTCCTGCAGTGATTCGGGTTGGTATGCTGTTCATTGGAAGAGTTAAAGTTGCATTTCACCTCCCTGTTGTGCGGACTGCACTTCTCTGGATAAGTTCCAGCTAATCTGAGGAGAAAGATGTGTCTCACTCTGATGTACCTTAGTTATACCAATAACTATCACAGTTTCTGACATGATGCAAGATGAAAGATCTATGTTTCATGAACATGTCAGCTTAGCTGCTTCTTAAACCTGAGCTAAGAGGGGAGAGGATCACTGAGCGTTTCCTCAGCTACTGTTCTCCCAACGTAATGACACAGCTCCTATTACAAGGTAATTTTATGGTTGTTCAGTaacagacactcacacagacaggctAATTCAGGGACTTTATTTTTAGTTACAGGTTGTTAAATGAATGGGCTTCAAGTGTGTCTGAATAATAACGTCTCGTATTATTATGTCAGAATTTGGACTTGTGTTATGTTGTTATCctggtactgtactgtgtcaACTGTATAACATTGAATAAAGCACGCTATTTGGTTTGAAA
>XM_036974976.1
CGATTGATCCTGTGGACGTGCCGTAGTAAATCAGGAAGTCAGATAAGCAAGCTACCATAGAATTACACAATGATCAATATAGATCCGCGCTCCTTTCTGTAGCTTGTCAACAAAGCCACACGTTTTCATATTTGTGAATACTTGTGTATTTGTTTGTTATTGTAATTGTAGCTATAATAAACTATACAGCTAGAAACATTTGTTAACTTTAACGGTTATTTAGTAACCGCGTGATAGCTACAGACAGGGTTCGTCAGATATCCGGTGCTTTGTAatttgctagctagccagttaTCCATCATACCTTTACTGCTGTGTTTACTAttgacagaaagtgtaggctctttCTGGAGGGGAAATGATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGAAGATCAAGACTATGTCCCATCTGATGACAACCTCAGTGAAGATGACATGAATGAATGTGTGAAAGAAGATGGTCTGGAAGGGGATGACCAGCATGGACAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAAGACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACAGAGCAGGATGGCAGTGTGGAGGAGCAGGAAGAAGGAGAGTTTTCTGATTCCAGGCCCAAGAAGGAGGTGGACgaagaaaaaaagaagaagaaagcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCCCAAATCCAAGCCATCTATTCCATCACCACAGTCTACCACTAAACAGCAGGCTGCACCCACAGACAGACCGAAGAAGTCCACTGAGGCCCCATCAGAACGTCATCATTTAGAGCATAACTCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTCTTTGACTTTGCTGGGGAAGAGGTCCGAGTAACCAAAGAGGTAGATGCTGACTCCAAGGAGGCCAAGTGCTTTCTGAAGTCCAAGGAGGAGACACCAGATGTGTGGACTATACCCAGCAGACCAGAGCCCTCCTCCCTCGCCCCTGGACCCAGgGGTCCAGCATgctctcctcatggccacagacATCTGGAGGAGCTATCTACTCTCCCCGGGGATACTGTGAGAACATTCTTAAAGTTGAAGCGCCTCTGCGAGGCACAAAATGGTTCCCATGTGAAGAGGCCTGCAGGGATGGGCAGCATCCTGAACCGCCTCGGGGGGAAGAAACAGAAGATGAGCACGTTGGAGAAGTCCAAGATGGACTGGGACGCCTTCAAGGATGAGGAGGGCATCGGGGACGAGCTGGCCATCCACAACCGAGGCAAAGAAGGGTATGTGGAGAGAAAGAATTTCCTGCAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTACGTCTCGGCAACATCATGAAGCGATGACAAGGAATAATAGAGGAGAGTACTTGGCCTCTGGACTGCCCATGTGTTTGGAATGGCCCGACAGTACCTGCTACCTGCTGTTTTTGGACCTGCGTCAGATTTCACACTCCCAATCTACACACAGCACTCTCATTACACCTCCATCTGTTCCTGGACCTGCGTGTGACCCGAATCACCTAGACTCAGACCCCTGACTGTGTCTTCCTACCTCTATGAGAGGTGTGTTGGCAGTGTTAACCTGCTTACCTCAGCACATGGCTGTGTGGGTGTTCCTGTACTGAACATTTGTCAACATCATCACCAGGATGAAGAAAAGAAAGGAAAGCATTccaggagtgagaagaggagaaTGAGCAGCACAGTCATGATTCCACACCCTGAACTCTGTATCAGTCGTTATTGGCATTGActcgagagggaaagagatgaggAATCCACACACTGCTCAGATATTTGTGCCATCGCTCCACATCTCCTGCAGTGATTCGGGTTGGTATGCTGTTCATTGGAAGAGTTAAAGTTGCATTTCACCTCCCTGTTGTGCGGACTGCACTTCTCTGGATAAGTTCCAGCTAATCTGAGGAGAAAGATGTGTCTCACTCTGATGTACCTTAGTTATACCAATAACTATCACAGTTTCTGACATGATGCAAGATGAAAGATCTATGTTTCATGAACATGTCAGCTTAGCTGCTTCTTAAACCTGAGCTAAGAGGGGAGAGGATCACTGAGCGTTTCCTCAGCTACTGTTCTCCCAACGTAATGACACAGCTCCTATTACAAGGTAATTTTATGGTTGTTCAGTaacagacactcacacagacaggctAATTCAGGGACTTTATTTTTAGTTACAGGTTGTTAAATGAATGGGCTTCAAGTGTGTCTGAATAATAACGTCTCGTATTATTATGTCAGAATTTGGACTTGTGTTATGTTGTTATCctggtactgtactgtgtcaACTGTATAACATTGAATAAAGCACGCTATTTGGTTTGAAA

Function

symbol description
cfdp1 Acts upstream of or within bone mineralization and cranial skeletal system development. Predicted to be located in kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).

NR:

description
craniofacial development protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597599.2 False 2374 mRNA 0.46 7 27984849 28033545
XM_036974966.1 False 2494 mRNA 0.46 8 27984849 28033545
XM_036974976.1 True 2415 mRNA 0.46 9 27984849 28033545

Neighbor

gene id symbol gene type direction distance location
LOC110520323 LOC106573733 coding downstream 6189 27850552 ~ 27978660 (-)
LOC110520292 gnao1 coding downstream 203081 27631001 ~ 27781768 (-)
LOC110520275 LOC106573726 coding downstream 374752 27575747 ~ 27610097 (-)
LOC110520267 LOC106573725 coding downstream 409757 27566356 ~ 27575092 (-)
mt2 NA coding downstream 432788 27551330 ~ 27552061 (-)
LOC110532142 carmil2 coding upstream 5377 28038922 ~ 28090334 (-)
ctcf ctcf coding upstream 65331 28098876 ~ 28106017 (-)
ripor1 fam65a coding upstream 72841 28106386 ~ 28220829 (-)
ranbp10 LOC106560827 coding upstream 260903 28294448 ~ 28338523 (-)
necab2 LOC106573751 coding upstream 501612 28535157 ~ 28661453 (-)
G28765 NA non-coding downstream 109195 27875407 ~ 27875654 (-)
G28764 NA non-coding downstream 109820 27874719 ~ 27875029 (-)
G28763 NA non-coding downstream 111790 27872817 ~ 27873059 (-)
G28749 NA non-coding downstream 139643 27844640 ~ 27845206 (-)
G28278 NA non-coding downstream 140269 27844233 ~ 27844580 (-)
G28949 NA non-coding upstream 304131 28337676 ~ 28338209 (-)
G29045 NA non-coding upstream 379898 28413443 ~ 28496850 (-)
G29095 NA non-coding upstream 465530 28499075 ~ 28499343 (-)
G29349 NA non-coding upstream 660371 28693916 ~ 28694324 (-)
G29359 NA non-coding upstream 677460 28711005 ~ 28711265 (-)
G25117 zfpm1 other downstream 2702831 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2703819 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 3033462 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 3046148 24910984 ~ 24938701 (-)
G28870 NA other upstream 23898 28057443 ~ 28066305 (-)
G29355 NA other upstream 670342 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 1246731 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3098348 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 other upstream 3392578 31426123 ~ 31444964 (-)

Expression


Co-expression Network