tsnaxip1 (tsnaxip1)


Basic Information

Item Value
gene id tsnaxip1
gene name tsnaxip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28331968 ~ 28338395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597743.2
TGTGTAAACATAACAACTCGGTCGTGAGCCTGAAGTGTTGGCCTGAAGTGAAGCAAATAGCTAGCTAACCTAATTGAAGAGGGATTAAATGTTAATGTATTTGGTAACTAGCTAGCTCGCTTGTTTGCTGCATCTAAACATAACAGATGTCGACACAGAAAGATATTAGATTACCACCTTTATCATCGTTTGAACGACTGTCGTCTGAGTGTCAACATAACGCTGAAAAAAGAACTGGGCGACAAGTGGCAATTGGCGGTCCTGGCTCATGTAGAGCATCAACCAGAGTTGGCTGTACTTCAGGCTACCTGTCAACCTGGCCTGCCCATGTCACCTCTCAAGTTGTTCAGCAGGGGAGGAGACACACTTCAGGTGGAGAGATCAGGAACCATGGATGCGGTGATGAGTTTGGTGGCCCTGTGGGGAAGCCACGATTCCTGGAGCAGCTTGAAAGCTACCTAAAGAAGGAGCTGCAGGCTCTTGACTTACAACAACCAAAAGTCCAAGAGCGCAAACTACAGGCATACCGGGAGGTCTTTGGCTGTTTCATTGAGGACTTCAAAACGTACAAGCCGCTTCTGTGTGCCATAAAAAATGAATATGAAATCACATTAGCATACCTACGGGACCAGATCCGGGAGCTGGAGCCTCTCCGTGCTCGTCTGGTTGTGGtgtcagagcagtgtgaaaaGAGGATCCTGGGCctgcgagaggaggagagggtagagattAGAGCTCTGAAGCAAGAGCGCCAACACCGTCAAAAGGTTATTGAAAACATGAGAGAGACACAAAGTTCCCTGCAGACCCAGGTGTGTTGTCTGCAGGCAGACCTGGCCGCTCAGTATCTGATGTACAGAGAAGAATGTGATGCTCGCAAGCTGCTCATCGCCAACATCAGCAGCATGAGCTATGGACCAGATGAGGAACCCGAGGAAGAGCAGGAAGAAGTGGAAATCGAGGACCCAGTGAAGGAGAAATTGGCTCTGAAGGTGTGTCGAGAGGACCTGACTAAAGCCCAGGTGGAGCTAAATCGCTTGCATGCGGAGTATGGAGACGTAGTTCCCCGCCGTGACTGGGAGACGTTGGACCATACCCACAAAGAGAACTTGCTTAAGCTGGAGACCCTGCAGAAAGACTTTGATCAGATGAAGGCTGAATATGACACACTGCTTGAGGTGCACAAGCAAGTCACAACACAGAGGGACAGCCTCCAGGGAGAACTGGAGGGCTTCAAAGAGGCCTCTACCCCCAGGCCAGAATGGGAGCAGTGTGCAGACGTACTGGGAGGTAGTGAGCGTTGGGCAGATCTCTCCCAGGGCCAGTCCAGCCAGCGGCGTTTGGAGATCCTGCTGGCAGAACTGGGAGGAAAGAACTCAGAGTTTTTCACTGGACTGGGTACTTCTGATGATGTGCCCATATACCTGCGCTATGAGGGGCAGTTAAAGAACCATAGGCTAAAGAAGAATGCGGTTGTGAGAATCCTCAAGGAGGTTTGGAAGGAGAAGGTCATGGAGGATGGAAGGAGAAATGAAAGCAGCAATCTTCCCGAGTTTCTGCGGCAACATCTGGAGAGACAATATGGGGAAAAGGCTGGAGAATGGGCTTATAGCTTAGTAGAGGGCATTCGTCAACACCAAAAGGATGACTCTGTCAGCCTCTTCAATGACATTCTCACAGGAAAGGTGGATGAGAGTGTGTACCATGGTCAGACACATCTACTGTCTAACCTGCTGAAAGTGTTGAtccacagtgacagtacagaGAGTGGGCTGCTCAGTGTTCAGGATTTCAGAGATAACTTGCAAATGGCCTTCCCTCTGAAAAGAGCGCAAGACATCGATGAGCTAGTGACCACAGCTCAGGCCGAGCTAGACAACAACGGTGGGAGCCTCCCATACCAAAGACTGTATACAGAGGATGCAGATGGGAAACACAAAGACTTCCTGAATCTGGTGAAGAAGCAGGCCTCCACAGAGAGGCATATGTATATTAGCCAACTGAGGACTCAGCTGGGAGGCAAAGGAGAGGTGACTGTGGCTGATCTAAGGGCTGCCTTTAAGAACATTGACCCCTCTCTGGACGCTACCACACTAGACTGGGTCCTAACTATGGCATTTCAGATACACCAGGAGGAGCtagagcagcacacaacacaaaTGGACACAGAGCTGGCCCTGCAGCACCTCCTGGCAATAGATGTGACCAGGGCTGGGCCTGCACCACAACAGGACTGAATCGCTCTAAGCACTTTTAGAAAGTGGTAGCCAGTCAGGCATCGAACTGTTTCTTTGCTATCATTGTGGCCTGCAAACTCATGAAATATTTCCAAAGGAACCAGGTTGAACATTAAACAAACACTTAAACGAACCGTTGTTACTGAAATTATCTGTAAGTCAAATGTGTTTCACACAGTAATTTATTATCGGTGTCAGAAATGGAATATTTACGTAAAAACATTAGCATCCCAAAGATGAGCTGTCACATACTTCTCTGATGTTCTAGTAACCAGGCTAGCAAATTGTTCACCGGAGCAGTGTGGCTACTCAATTCAAACGTCTGTTTATAGTAGCATACAGTGCCATTAGAACTGTGCCATCTTGTGGATGCAGGCATGTAAACCATGGCCATTCTACCCATCCTTATAAATTTCCACAACAAATGTAGTTTACCTTCATTAAAGTGGGCTGATTTAAAAGGTACCATATTTTTGTATGTTGAGAGTTTCGTGTGGGTGGAAAAACCTACCAGCTGTAT
>XM_021597752.2
TGTGTAAACATAACAACTCGGTCGTGAGCCTGAAGTGTTGGCCTGAAGTGAAGCAAATAGCTAGCTAACCTAATTGAAGAGGGATTAAATGTTAATGTATTTGGTAACTAGCTAGCTCGCTTGTTTGCTGCATCTAAACATAACAGATGTCGACACAGAAAGATATTAGATTACCACCTTTATCATCGTTTGAACGGCAAGTGGCCTTGTCCAATTAAGTAGTAGGCTAACGTTAACTGTTGACTTAGCTAGCTCACTCAGATAACGTTACTCTATGATAGTAACGTAACTAAGCGaatcatataataataataataataataataataatttctagTTAGCTGCTTGTTTCCGTCTCACTTTCAGACTGTCGTCTGAGTGTCAACATAACGCTGAAAAAAGAACTGGGCGACAAGTGGCAATTGGCGGTCCTGGCTCATGTAGAGCATCAACCAGAGTTGGCTGTACTTCAGGCTACCTGTCAACCTGGCCTGCCCATGTCACCTCTCAAGTTGTTCAGCAGGGGAGGAGACACACTTCAGGTGGAGAGATCAGGAACCATGGCATACCTACGGGACCAGATCCGGGAGCTGGAGCCTCTCCGTGCTCGTCTGGTTGTGGtgtcagagcagtgtgaaaaGAGGATCCTGGGCctgcgagaggaggagagggtagagattAGAGCTCTGAAGCAAGAGCGCCAACACCGTCAAAAGGTTATTGAAAACATGAGAGAGACACAAAGTTCCCTGCAGACCCAGGTGTGTTGTCTGCAGGCAGACCTGGCCGCTCAGTATCTGATGTACAGAGAAGAATGTGATGCTCGCAAGCTGCTCATCGCCAACATCAGCAGCATGAGCTATGGACCAGATGAGGAACCCGAGGAAGAGCAGGAAGAAGTGGAAATCGAGGACCCAGTGAAGGAGAAATTGGCTCTGAAGGTGTGTCGAGAGGACCTGACTAAAGCCCAGGTGGAGCTAAATCGCTTGCATGCGGAGTATGGAGACGTAGTTCCCCGCCGTGACTGGGAGACGTTGGACCATACCCACAAAGAGAACTTGCTTAAGCTGGAGACCCTGCAGAAAGACTTTGATCAGATGAAGGCTGAATATGACACACTGCTTGAGGTGCACAAGCAAGTCACAACACAGAGGGACAGCCTCCAGGGAGAACTGGAGGGCTTCAAAGAGGCCTCTACCCCCAGGCCAGAATGGGAGCAGTGTGCAGACGTACTGGGAGGTAGTGAGCGTTGGGCAGATCTCTCCCAGGGCCAGTCCAGCCAGCGGCGTTTGGAGATCCTGCTGGCAGAACTGGGAGGAAAGAACTCAGAGTTTTTCACTGGACTGGGTACTTCTGATGATGTGCCCATATACCTGCGCTATGAGGGGCAGTTAAAGAACCATAGGCTAAAGAAGAATGCGGTTGTGAGAATCCTCAAGGAGGTTTGGAAGGAGAAGGTCATGGAGGATGGAAGGAGAAATGAAAGCAGCAATCTTCCCGAGTTTCTGCGGCAACATCTGGAGAGACAATATGGGGAAAAGGCTGGAGAATGGGCTTATAGCTTAGTAGAGGGCATTCGTCAACACCAAAAGGATGACTCTGTCAGCCTCTTCAATGACATTCTCACAGGAAAGGTGGATGAGAGTGTGTACCATGGTCAGACACATCTACTGTCTAACCTGCTGAAAGTGTTGAtccacagtgacagtacagaGAGTGGGCTGCTCAGTGTTCAGGATTTCAGAGATAACTTGCAAATGGCCTTCCCTCTGAAAAGAGCGCAAGACATCGATGAGCTAGTGACCACAGCTCAGGCCGAGCTAGACAACAACGGTGGGAGCCTCCCATACCAAAGACTGTATACAGAGGATGCAGATGGGAAACACAAAGACTTCCTGAATCTGGTGAAGAAGCAGGCCTCCACAGAGAGGCATATGTATATTAGCCAACTGAGGACTCAGCTGGGAGGCAAAGGAGAGGTGACTGTGGCTGATCTAAGGGCTGCCTTTAAGAACATTGACCCCTCTCTGGACGCTACCACACTAGACTGGGTCCTAACTATGGCATTTCAGATACACCAGGAGGAGCtagagcagcacacaacacaaaTGGACACAGAGCTGGCCCTGCAGCACCTCCTGGCAATAGATGTGACCAGGGCTGGGCCTGCACCACAACAGGACTGAATCGCTCTAAGCACTTTTAGAAAGTGGTAGCCAGTCAGGCATCGAACTGTTTCTTTGCTATCATTGTGGCCTGCAAACTCATGAAATATTTCCAAAGGAACCAGGTTGAACATTAAACAAACACTTAAACGAACCGTTGTTACTGAAATTATCTGTAAGTCAAATGTGTTTCACACAGTAATTTATTATCGGTGTCAGAAATGGAATATTTACGTAAAAACATTAGCATCCCAAAGATGAGCTGTCACATACTTCTCTGATGTTCTAGTAACCAGGCTAGCAAATTGTTCACCGGAGCAGTGTGGCTACTCAATTCAAACGTCTGTTTATAGTAGCATACAGTGCCATTAGAACTGTGCCATCTTGTGGATGCAGGCATGTAAACCATGGCCATTCTACCCATCCTTATAAATTTCCACAACAAATGTAGTTTACCTTCATTAAAGTGGGCTGATTTAAAAGGTACCATATTTTTGTATGTTGAGAGTTTCGTGTGGGTGGAAAAACCTACCAGCTGTAT
>XM_036975065.1
CCATCCATCTGCCATATAATATACAGGCATACCGGGAGGTCTTTGGCTGTTTCATTGAGGACTTCAAAACGTACAAGCCGCTTCTGTGTGCCATAAAAAATGAATATGAAATCACATTAGCATACCTACGGGACCAGATCCGGGAGCTGGAGCCTCTCCGTGCTCGTCTGGTTGTGGtgtcagagcagtgtgaaaaGAGGATCCTGGGCctgcgagaggaggagagggtagagattAGAGCTCTGAAGCAAGAGCGCCAACACCGTCAAAAGGTTATTGAAAACATGAGAGAGACACAAAGTTCCCTGCAGACCCAGGTGTGTTGTCTGCAGGCAGACCTGGCCGCTCAGTATCTGATGTACAGAGAAGAATGTGATGCTCGCAAGCTGCTCATCGCCAACATCAGCAGCATGAGCTATGGACCAGATGAGGAACCCGAGGAAGAGCAGGAAGAAGTGGAAATCGAGGACCCAGTGAAGGAGAAATTGGCTCTGAAGGTGTGTCGAGAGGACCTGACTAAAGCCCAGGTGGAGCTAAATCGCTTGCATGCGGAGTATGGAGACGTAGTTCCCCGCCGTGACTGGGAGACGTTGGACCATACCCACAAAGAGAACTTGCTTAAGCTGGAGACCCTGCAGAAAGACTTTGATCAGATGAAGGCTGAATATGACACACTGCTTGAGGTGCACAAGCAAGTCACAACACAGAGGGACAGCCTCCAGGGAGAACTGGAGGGCTTCAAAGAGGCCTCTACCCCCAGGCCAGAATGGGAGCAGTGTGCAGACGTACTGGGAGGTAGTGAGCGTTGGGCAGATCTCTCCCAGGGCCAGTCCAGCCAGCGGCGTTTGGAGATCCTGCTGGCAGAACTGGGAGGAAAGAACTCAGAGTTTTTCACTGGACTGGGTACTTCTGATGATGTGCCCATATACCTGCGCTATGAGGGGCAGTTAAAGAACCATAGGCTAAAGAAGAATGCGGTTGTGAGAATCCTCAAGGAGGTTTGGAAGGAGAAGGTCATGGAGGATGGAAGGAGAAATGAAAGCAGCAATCTTCCCGAGTTTCTGCGGCAACATCTGGAGAGACAATATGGGGAAAAGGCTGGAGAATGGGCTTATAGCTTAGTAGAGGGCATTCGTCAACACCAAAAGGATGACTCTGTCAGCCTCTTCAATGACATTCTCACAGGAAAGGTGGATGAGAGTGTGTACCATGGTCAGACACATCTACTGTCTAACCTGCTGAAAGTGTTGAtccacagtgacagtacagaGAGTGGGCTGCTCAGTGTTCAGGATTTCAGAGATAACTTGCAAATGGCCTTCCCTCTGAAAAGAGCGCAAGACATCGATGAGCTAGTGACCACAGCTCAGGCCGAGCTAGACAACAACGGTGGGAGCCTCCCATACCAAAGACTGTATACAGAGGATGCAGATGGGAAACACAAAGACTTCCTGAATCTGGTGAAGAAGCAGGCCTCCACAGAGAGGCATATGTATATTAGCCAACTGAGGACTCAGCTGGGAGGCAAAGGAGAGGTGACTGTGGCTGATCTAAGGGCTGCCTTTAAGAACATTGACCCCTCTCTGGACGCTACCACACTAGACTGGGTCCTAACTATGGCATTTCAGATACACCAGGAGGAGCtagagcagcacacaacacaaaTGGACACAGAGCTGGCCCTGCAGCACCTCCTGGCAATAGATGTGACCAGGGCTGGGCCTGCACCACAACAGGACTGAATCGCTCTAAGCACTTTTAGAAAGTGGTAGCCAGTCAGGCATCGAACTGTTTCTTTGCTATCATTGTGGCCTGCAAACTCATGAAATATTTCCAAAGGAACCAGGTTGAACATTAAACAAACACTTAAACGAACCGTTGTTACTGAAATTATCTGTAAGTCAAATGTGTTTCACACAGTAATTTATTATCGGTGTCAGAAATGGAATATTTACGTAAAAACATTAGCATCCCAAAGATGAGCTGTCACATACTTCTCTGATGTTCTAGTAACCAGGCTAGCAAATTGTTCACCGGAGCAGTGTGGCTACTCAATTCAAACGTCTGTTTATAGTAGCATACAGTGCCATTAGAACTGTGCCATCTTGTGGATGCAGGCATGTAAACCATGGCCATTCTACCCATCCTTATAAATTTCCACAACAAATGTAGTTTACCTTCATTAAAGTGGGCTGATTTAAAAGGTACCATATTTTTGTATGTTGAGAGTTTCGTGTGGGTGGAAAAACCTACCAGCTGTAT

Function

symbol description
tsnaxip1 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

NR:

description
translin-associated factor X-interacting protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597743.2 False 2757 mRNA 0.48 16 28331968 28338395
XM_021597752.2 False 2706 mRNA 0.47 13 28331968 28338395
XM_036975065.1 True 2262 mRNA 0.48 13 28332880 28338395

Neighbor

gene id symbol gene type direction distance location
pard6a pard6a coding upstream 43880 28242570 ~ 28288088 (+)
LOC110520354 LOC106573739 coding upstream 294677 28033707 ~ 28037291 (+)
LOC110520308 nudt21 coding upstream 491711 27834798 ~ 27840257 (+)
LOC110532139 LOC106573731 coding upstream 501390 27816479 ~ 27830578 (+)
LOC110520258 LOC106560847 coding upstream 767662 27560102 ~ 27565152 (+)
LOC110520482 edc4 coding downstream 8146 28346541 ~ 28385332 (+)
nrn1la LOC106560823 coding downstream 49573 28387968 ~ 28444370 (+)
pskh1 pskh1 coding downstream 140485 28478880 ~ 28494053 (+)
mbtps1 LOC106573750 coding downstream 162448 28500843 ~ 28526202 (+)
LOC110532150 LOC106560818 coding downstream 192450 28530845 ~ 28534305 (+)
G28480 NA non-coding upstream 123939 28158869 ~ 28208029 (+)
G28487 NA non-coding upstream 144208 28167928 ~ 28187760 (+)
G28473 NA non-coding upstream 178179 28152725 ~ 28153789 (+)
G28423 NA non-coding upstream 263031 28063840 ~ 28068937 (+)
G28636 NA non-coding downstream 158657 28497052 ~ 28497367 (+)
G28638 NA non-coding downstream 161330 28499725 ~ 28499948 (+)
G28653 NA non-coding downstream 196772 28535167 ~ 28610883 (+)
G29227 NA non-coding downstream 338831 28677226 ~ 28677802 (+)
G29229 NA non-coding downstream 341787 28680182 ~ 28680381 (+)
G28416 carmil2 other upstream 283606 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 477014 27853757 ~ 27854954 (+)
G28280 NA other upstream 486957 27844640 ~ 27845011 (+)
G27553 NA other upstream 1015451 27257563 ~ 27316517 (+)
LOC110520661 LOC106573762 other downstream 727261 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 854334 29188958 ~ 29316547 (+)
G33249 NA other downstream 3512078 31850473 ~ 31850969 (+)
G33284 NA other downstream 3618135 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 4112459 32450854 ~ 32452385 (+)

Expression

tsnaxip1(tsnaxip1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

tsnaxip1(tsnaxip1) Expression in each Bioproject

Bar chart with 21 bars.
tsnaxip1(tsnaxip1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network