nutf2 (nutf2)


Basic Information

Item Value
gene id nutf2
gene name nutf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28338300 ~ 28346361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597814.2
ATGTAGTTTACCTTCATTAAAGTGGGCTGATTTAAAAGGTACCATATTTTTGTATGTTGAGAGTTTCGTGTGGGTGGAAAAACCTACCAGCTGTATAGAGTGAAGAACTTCATTTCCCACGTAGCATTAGACAGATGAGCATGCGCCTAAACTGGTGTAATCGCCATAACTGGAAGCCGGGGCACGGTTTTGGGTTCGCGGTGATTCAGAATGGGGGAAAAGCCGATTTGGGAACAGATAGGATCCAGTTTTGTGCAACATTACTACCAGCTCTTTGACACGGACAGGACCCAGCTTGGAGCAATATATATCGATGCATCATGCCTTACATGGGAGGGACAGCAATTCCAGGGAAAAGCAGCGATTGTCGAGAAACTTTCTACTCTCCCCTTCTTAAAAATAGCTCACAGTATAACAGCACAAGACCACCAGCCCACACCTGACAGCTGTATAATGAGTATGGTAGTAGGACAATTAAAAGCTGATGAGGACCCCATCATGGGATTTCATCAGAGTTTCATCCTGAAGAACATTAATGATGCCTGGGTATGCACCAATGATATGTTCCGGCTCGCGCTGCACAATTTCGGCTAAGGACACCAGAAGTGGGCAGAGTGGATATAAGGGAAGGCTGAGGATGGGGGAGGTCTTGCAGAGACACCTAAACGCCCAACCTCCTCTCTGTATCATCCATACCTGTTTGAGAAATTACACCGGATTCCAGATGTCAATCACAGAGACATGCAGGCACATAGGCTacatgccttcaactgaaatgagATCTGTTCCTTTGCTGAGAGTTCACAGATCCATCAAGAGTCCCTTTCCCTACGCTGACCTGCATGATGCTGGGGAGCTTAAATATCTGAAGATGGCAGACAAGGAAAAAAATGTACCAATTTACCTTCACCATTTTAGTTTTATGTTCGGACTCAATGTCTTATATCCTCATGTTTTCTCATCGTACTCCCCTCCCTGTGTGTTATCAGCTTGCCTTATTGTATACAACTAAATCTCTTTTTAAAAGTTTAATTTAACATTCATTGTTATGTCAGGTTGCTCTAGCAATCCAAATAATCATAGAAAATATTATCAATAACATCCTTAGACCAGCAAGCTTCCCATTTCCTCCTCATGCTCTCTGACAATGAATACAAAAGCCATGATACACAATAAACCGTTTACTTTTTCTTAATGTGAGCTCATTGTTCCTCTGCCTTTCTTAcccatttctctccctccacttACCTTGTCACTCTTATTTTAATTGTGTTAGCATTATATTGTAAACAATTTAGGTTCTGGTCAGTAGTTCTATAGCACATTGTTGTATATGATCTGCTATAGCATGTCTTTTCTTGAGCAAGATGCAGCcaatatattgttatatatatgGACATAGGGTTCCCTCAATTTTTTTCCCCAAAATAATTTCCTTTGGCCGATACTGCAGAAATAGAACCCCATAATGAGTTGAAGCATGCTCTTGGAAATTGGGATCACTTTGATGGCACAATGTACTGTAGCATTGACCTGACATTTTTGGAGAGGCTTTGCAAGTGTTCTTTTGCAAGACGAGGAACAAGCATATGTCAAACTGCCTTatttatttccttttttttttattcttttttttacaaTGATTACATATCTCTTTTCCACATGGAACAGAATGTACGGACTGCACATTTTAATTCCATACAATGTTTTGGAAAATAAAGAAACAGTTCTTGCCTGTTGTGTGACAAGGAAATCCCCAAGACTTCCTGCAGGAAAAGTAAAGTGGTGGTGGGGGCCACTTCTCTCATGATCATATTTTTACAGTAAAATTTGTCTAGTAAtcaagtttattttttttctatttaGATTTGATTTACAGTTTATAATTATATATTGTTACCAATTGTTTGCTGTCAATCAACGACTGGCATAACTAATGCTTTTCCTCCCTCAGCCAGTGCATTGGCTACTGTTTTTGTTTTCCCTGATGGTACACTGGTTCAATTAAGAAGATCAAAGTCATCTCTTCAAGGTCTGCTATCATTCACAGATGTACAAGGTATTCTATTCTTCTGGCAGACAGAAATAAAATACGTATGAAAAGTA
>XM_021597821.2
CACGCCTATGTTCTGGCTGGGCCCGGTCGAAAGAAGCTTCAGTATGTTGAGGAACGGTTAGGGTATTTTTAGCAGCCGATAGTGCGAAAGAACGTGCCATACCACTTGTATATCTAGCATTCACTTTATATTTTAATTTTCTAGCCCTTTGATTGcattttattagctaagcaatacgGGGCATCGAGCTAGTCAGACAACCAACCAATGTTTGATATTAGCCTTGCCTATGCTAGCTAGCTCAGCCAAAGTCAAAGAAAGAGTCCAACATTGCCCATGTCATGGCATGCTCACGGCGTGAGCGGACTGTGTGATTCAGAATGGGGGAAAAGCCGATTTGGGAACAGATAGGATCCAGTTTTGTGCAACATTACTACCAGCTCTTTGACACGGACAGGACCCAGCTTGGAGCAATATATATCGATGCATCATGCCTTACATGGGAGGGACAGCAATTCCAGGGAAAAGCAGCGATTGTCGAGAAACTTTCTACTCTCCCCTTCTTAAAAATAGCTCACAGTATAACAGCACAAGACCACCAGCCCACACCTGACAGCTGTATAATGAGTATGGTAGTAGGACAATTAAAAGCTGATGAGGACCCCATCATGGGATTTCATCAGAGTTTCATCCTGAAGAACATTAATGATGCCTGGGTATGCACCAATGATATGTTCCGGCTCGCGCTGCACAATTTCGGCTAAGGACACCAGAAGTGGGCAGAGTGGATATAAGGGAAGGCTGAGGATGGGGGAGGTCTTGCAGAGACACCTAAACGCCCAACCTCCTCTCTGTATCATCCATACCTGTTTGAGAAATTACACCGGATTCCAGATGTCAATCACAGAGACATGCAGGCACATAGGCTacatgccttcaactgaaatgagATCTGTTCCTTTGCTGAGAGTTCACAGATCCATCAAGAGTCCCTTTCCCTACGCTGACCTGCATGATGCTGGGGAGCTTAAATATCTGAAGATGGCAGACAAGGAAAAAAATGTACCAATTTACCTTCACCATTTTAGTTTTATGTTCGGACTCAATGTCTTATATCCTCATGTTTTCTCATCGTACTCCCCTCCCTGTGTGTTATCAGCTTGCCTTATTGTATACAACTAAATCTCTTTTTAAAAGTTTAATTTAACATTCATTGTTATGTCAGGTTGCTCTAGCAATCCAAATAATCATAGAAAATATTATCAATAACATCCTTAGACCAGCAAGCTTCCCATTTCCTCCTCATGCTCTCTGACAATGAATACAAAAGCCATGATACACAATAAACCGTTTACTTTTTCTTAATGTGAGCTCATTGTTCCTCTGCCTTTCTTAcccatttctctccctccacttACCTTGTCACTCTTATTTTAATTGTGTTAGCATTATATTGTAAACAATTTAGGTTCTGGTCAGTAGTTCTATAGCACATTGTTGTATATGATCTGCTATAGCATGTCTTTTCTTGAGCAAGATGCAGCcaatatattgttatatatatgGACATAGGGTTCCCTCAATTTTTTTCCCCAAAATAATTTCCTTTGGCCGATACTGCAGAAATAGAACCCCATAATGAGTTGAAGCATGCTCTTGGAAATTGGGATCACTTTGATGGCACAATGTACTGTAGCATTGACCTGACATTTTTGGAGAGGCTTTGCAAGTGTTCTTTTGCAAGACGAGGAACAAGCATATGTCAAACTGCCTTatttatttccttttttttttattcttttttttacaaTGATTACATATCTCTTTTCCACATGGAACAGAATGTACGGACTGCACATTTTAATTCCATACAATGTTTTGGAAAATAAAGAAACAGTTCTTGCCTGTTGTGTGACAAGGAAATCCCCAAGACTTCCTGCAGGAAAAGTAAAGTGGTGGTGGGGGCCACTTCTCTCATGATCATATTTTTACAGTAAAATTTGTCTAGTAAtcaagtttattttttttctatttaGATTTGATTTACAGTTTATAATTATATATTGTTACCAATTGTTTGCTGTCAATCAACGACTGGCATAACTAATGCTTTTCCTCCCTCAGCCAGTGCATTGGCTACTGTTTTTGTTTTCCCTGATGGTACACTGGTTCAATTAAGAAGATCAAAGTCATCTCTTCAAGGTCTGCTATCATTCACAGATGTACAAGGTATTCTATTCTTCTGGCAGACAGAAATAAAATACGTATGAAAAGTA

Function

symbol description
nutf2 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

NR:

description
PREDICTED: nuclear transport factor 2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597814.2 False 2106 mRNA 0.40 5 28338300 28346361
XM_021597821.2 True 2216 mRNA 0.40 5 28338649 28346361

Neighbor

gene id symbol gene type direction distance location
pard6a pard6a coding upstream 50212 28242570 ~ 28288088 (+)
LOC110520354 LOC106573739 coding upstream 301009 28033707 ~ 28037291 (+)
LOC110520308 nudt21 coding upstream 498043 27834798 ~ 27840257 (+)
LOC110532139 LOC106573731 coding upstream 507722 27816479 ~ 27830578 (+)
LOC110520258 LOC106560847 coding upstream 773994 27560102 ~ 27565152 (+)
LOC110520482 edc4 coding downstream 180 28346541 ~ 28385332 (+)
nrn1la LOC106560823 coding downstream 41607 28387968 ~ 28444370 (+)
pskh1 pskh1 coding downstream 132519 28478880 ~ 28494053 (+)
mbtps1 LOC106573750 coding downstream 154482 28500843 ~ 28526202 (+)
LOC110532150 LOC106560818 coding downstream 184484 28530845 ~ 28534305 (+)
G28480 NA non-coding upstream 130271 28158869 ~ 28208029 (+)
G28487 NA non-coding upstream 150540 28167928 ~ 28187760 (+)
G28473 NA non-coding upstream 184511 28152725 ~ 28153789 (+)
G28423 NA non-coding upstream 269363 28063840 ~ 28068937 (+)
G28636 NA non-coding downstream 150691 28497052 ~ 28497367 (+)
G28638 NA non-coding downstream 153364 28499725 ~ 28499948 (+)
G28653 NA non-coding downstream 188806 28535167 ~ 28610883 (+)
G29227 NA non-coding downstream 330865 28677226 ~ 28677802 (+)
G29229 NA non-coding downstream 333821 28680182 ~ 28680381 (+)
G28416 carmil2 other upstream 289938 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 483346 27853757 ~ 27854954 (+)
G28280 NA other upstream 493289 27844640 ~ 27845011 (+)
G27553 NA other upstream 1021783 27257563 ~ 27316517 (+)
LOC110520661 LOC106573762 other downstream 719295 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 846368 29188958 ~ 29316547 (+)
G33249 NA other downstream 3504112 31850473 ~ 31850969 (+)
G33284 NA other downstream 3610169 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 4104493 32450854 ~ 32452385 (+)

Expression


Co-expression Network