nrn1la (LOC106560823)


Basic Information

Item Value
gene id nrn1la
gene name LOC106560823
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28387968 ~ 28444370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597865.2
AATGCGCCCTCCCTCACGCGCACTAGATGCACATAGGAGTGAGTAGGCGCTCTTCTCTTGCGCAAGATGCGAGATACTGTATCACCTATGTAGTACTACCGTTGCAGGTAGCAAAGTAGCTTTGCTCAGCAAACGGATTGTAACATTTGGACGTGGTCTTTTTTTCCGGAGTTGAGCTGCCTGAGCAGAATGGTATCGCTCGTGAATTACGCGTGTCTTTTCTTGCCTGTTGCTCTCCATCTGATCGTCGGCCCCTGTCCCAGCTCTGCTGCCTCCACCAGGAGGTGTCACTCCATCTATAAGGGCTTCGCTCAGTGTCTGATGGCTCTGGGGGACAGCCTGACTGAGAGTGCCCAGAAGATTGAGGATACACAGGAGATACACACCATCTGCAAGTCCTGGGATGAGTTTCATGACTGTGCGAACGTGGCGATGGCGGGCTGTCCTGATGAGGCTGCTGCAGTCTGGGAGTCTCTGCGACAGGAGTCCAAGAAGATGCAGTTTTCTGGTAACCTGTATGACATGTGCTCCAGTCGTAACCAACCAGCTGGCACTGCTGATGCCCTGAGCCCACCCAACCAGGAAGAGATTAACCAGGAGTCTCTAAAAGCACACACCCACCATCTAGGCCCTGCCTCTTTCTGGTTGCTCTCCTTATGTCTGTCCCTTCTGCTGCTGTTGGCCAAGATATAGGCACGATCAgggtgaaggggagggaggaacTCATTGAGGAcatgtaaaaaattaaataaaaaataataaactcACAAATATTTTTTGTGTACTAAAACTGAGTTGCATATATTTCTAGCTGCATGTTCAGATTGGTGGCTCCTCATCTGTAGTGTATTCATTTCATACACACATTATCTCTCTAACTCCTTTTCATCAATTTAAGAGTTGGATAGTATGGTTCCAGGGGGATGCTGTCTGGGAGAGCTGAGGGTAGAATGTAAATGAGCAAATAAACCTCAAACATCTAGAACCCAAGACAGATTATTCAAGCCTCACCAGGCAAGGCTTAACAGCAACATCTCACACAGAAACCTGCATCCTGAAGTTTCCTTCAGGTTGTTATTCAATCAGAGAGCACTGTGGGATGTTTTGTAGCATTAAAGGCTCAGACAATTTTTGTTATTTCGTTTGGGACTCACTGAGGATTACAGAGAGAATTACTCAGAGTAAAACCTCTAGAACAATAGAGCTTACCTGCAGACAAGCATAATGAAATATACCCAGCTCATGGCAGTTTGAATGTTAAGGACTGAAGGCTTGGATCGCTGTGTATTCACCCAGTGCGGGTCTATTTAACACAGCGTTCATTAACAGATAAACCACTTAACTTACATGAAATCACTTCTTGTCTTGGTCAAGTCTAGGCGGACCTAGAATTGTGTTTAGTCATTTGTGTTGAAGAAATATGGATGAAGGTGTACATAATGGAATTTATtcatatgactatttatgtacaTATCAAATGGCACATCAATATATAGTATCAAGCCTTTTGATGCTGCAGGAGCCTGTGTGTAAACGGAGACCCTGGTGAAATAATAACGGTATAGAAAAAAGAAGAAAGGTTTTACTCAAAAGGACTTTCATTTTATTAAAGTCAACACCACGAGGATAACCCCTGCTTGACTCCCTGACATTAAATCTTAGCTGCGTTTAAAACCTCGTTTTAATTGAATGTAGGTCTGAGATAAACTACCATGTTGGAAATGGAAAATACCTTTTCAATGTATGTTTTCTATTGGCTTTGCTCTCAACAGCTTTATCGGTCAATTTGTATTTGCAGTGGATTTGCATTTTTAATTGGAAATTAATCTTGTTTGCTATTGCAGCAAGTTTGTGTGGAATGGTTAGGGAGGCAGCAGTAAACTACAGTGAAAACTTGAAGGAAATCAATTtttatcttcattgtaaagtaaAGGACATACAATATATGAAGTAGATTTAGTTGAtcattaaataaatgtaaatatttAAAGAATATTGTGTTGCTATGACAACAGTTAGCGCTACAACATTTTAGGTTACTGGATAACACATTTTAGACTGTTTGCAAACTGTGAGGACTTTATTACTTATCTGAATTTcaataaattgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgggtctgtgtgtgtgtgtatgtgtatgtgtacgtgtacgtgtgtgtgcgtgcgtgtgtgtattgtgCCAGTGTAATAACAATTGGTGAATGAAAGCAGTAGCAATGCCTTTTATGTCAAAATACAGTATGGAGACTCTCCCTTATCTTGCTTTACAATAAGCTTTTTCATTCTTGTATACATCAGCTCATAAGCATCATTATTTTTCACATATATATAATGTTACTGTACCTATATTGTATACTTCTGTACTAGCAGTtatactggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagcgttgggccagtaaccgaaaggccgctaagattgaatccccgagctgacaaggtata

Function

NR:

description
neuritin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597865.2 True 2523 mRNA 0.42 3 28387968 28444370

Neighbor

gene id symbol gene type direction distance location
LOC110520482 edc4 coding upstream 2636 28346541 ~ 28385332 (+)
nutf2 nutf2 coding upstream 41607 28338300 ~ 28346361 (+)
tsnaxip1 tsnaxip1 coding upstream 49573 28331968 ~ 28338395 (+)
pard6a pard6a coding upstream 99880 28242570 ~ 28288088 (+)
LOC110520354 LOC106573739 coding upstream 350677 28033707 ~ 28037291 (+)
pskh1 pskh1 coding downstream 34510 28478880 ~ 28494053 (+)
mbtps1 LOC106573750 coding downstream 56473 28500843 ~ 28526202 (+)
LOC110532150 LOC106560818 coding downstream 86475 28530845 ~ 28534305 (+)
pnp6 LOC106573753 coding downstream 293745 28738115 ~ 28742553 (+)
LOC110520547 LOC106573754 coding downstream 305512 28749882 ~ 28763697 (+)
G28480 NA non-coding upstream 179939 28158869 ~ 28208029 (+)
G28487 NA non-coding upstream 200208 28167928 ~ 28187760 (+)
G28473 NA non-coding upstream 234179 28152725 ~ 28153789 (+)
G28423 NA non-coding upstream 319031 28063840 ~ 28068937 (+)
G28636 NA non-coding downstream 52682 28497052 ~ 28497367 (+)
G28638 NA non-coding downstream 55355 28499725 ~ 28499948 (+)
G28653 NA non-coding downstream 90797 28535167 ~ 28610883 (+)
G29227 NA non-coding downstream 232856 28677226 ~ 28677802 (+)
G29229 NA non-coding downstream 235812 28680182 ~ 28680381 (+)
G28416 carmil2 other upstream 339606 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 533014 27853757 ~ 27854954 (+)
G28280 NA other upstream 542957 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 822816 27560102 ~ 27565152 (+)
G27553 NA other upstream 1071451 27257563 ~ 27316517 (+)
LOC110520661 LOC106573762 other downstream 621286 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 748359 29188958 ~ 29316547 (+)
G33249 NA other downstream 3406103 31850473 ~ 31850969 (+)
G33284 NA other downstream 3512160 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 4006484 32450854 ~ 32452385 (+)

Expression


Co-expression Network