Fish Transcriptome and Expression Database

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model fish

XLOC_019722 (CR450753.1)

Basic Information

Item	Value
gene id	XLOC_019722
gene name	CR450753.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007132.7
NCBI id	CM002905.2
chromosome length	45934066
location	31337670 ~ 31337785 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038821
ttttatgtcATGTCACCTTGCAGCCcgagactggttactcactgaagctaagcagggctgagcctggtcagtacctggatgggagaccatatgggaacACTAGGTTGTTGTTGGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106726

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00038821	True	116	rRNA	0.51	1	31337670	31337785

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_019721	ca4c	coding	downstream	47088	31275327 ~ 31290582 (-)
XLOC_019720	crcp	coding	downstream	85539	31244500 ~ 31252131 (-)
XLOC_019719	tpst1l	coding	downstream	96416	31232873 ~ 31241254 (-)
XLOC_019718	zgc:152891	coding	downstream	111625	31194980 ~ 31226045 (-)
XLOC_019717	rap1gap2b	coding	downstream	193767	31020299 ~ 31143903 (-)
XLOC_019723	zgc:165573	coding	upstream	683487	32021272 ~ 32036597 (-)
XLOC_019724	si:ch211-160j14.2	coding	upstream	714295	32052080 ~ 32060993 (-)
XLOC_019725	mat2b	coding	upstream	723940	32061725 ~ 32082149 (-)
XLOC_019726	si:ch211-160j14.3	coding	upstream	751706	32089491 ~ 32119965 (-)
XLOC_019727	NA	coding	upstream	789129	32126914 ~ 32278342 (-)
XLOC_019714	BX936320.1	non-coding	downstream	449296	30886127 ~ 30888374 (-)
XLOC_019712	NA	non-coding	downstream	543080	30792655 ~ 30794590 (-)
XLOC_019709	NA	non-coding	downstream	679110	30651065 ~ 30658560 (-)
XLOC_019707	NA	non-coding	downstream	754638	30576261 ~ 30583032 (-)
XLOC_019703	NA	non-coding	downstream	928466	30401784 ~ 30409204 (-)
XLOC_019734	NA	non-coding	upstream	1318172	32655957 ~ 32660440 (-)
XLOC_019737	zgc:194629	non-coding	upstream	1720840	33058625 ~ 33090204 (-)
XLOC_019739	CU019662.2	non-coding	upstream	1799163	33136948 ~ 33137083 (-)
XLOC_019740	NA	non-coding	upstream	1807467	33145252 ~ 33146525 (-)

Expression

Co-expression Network