LOC110520547 (LOC106573754)


Basic Information

Item Value
gene id LOC110520547
gene name LOC106573754
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28749882 ~ 28763697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597940.2
CTATATGGGAACTGCAGTCTCTACTTTGGTTTAAAAGCTCCGGCAGCGCGCAGGGTTGTTACAGTGTGGATTGTGGACCTACAGAGAAAAAGTTTGCACGGGATATTCTAGCTCACAGGAGGAAAAGTTGTTGGGAAGATGGCAAACAAACTACAGCAGCCTCCACACCTTCATCTGGCGGAATTGAGCGCCACCCAGTTCATCGACATCTGGAACCATTTCGATACCGATGGCAATGGCTATATCGAGGGCAAGGAACTGGAGAACTTCTTCAGGGAGTTGGAGATTTCAAGGAAAGGGGCCGGAGTGGACCCATCAAACTCCACTTTCAAAGAGAAGATGAAGGAGTTCATGCAAAAGTTTGACAAGAATGCAGATGGGAGAATTGAGATGTCTGAGcTAGCTCAGATTTTGCCCACAGAGGAAAACTTCCTGCTTTGCTTCAGAGAGTTTGTGGGATCTAGTTCTGAATTCATGGCAGCATGGCGACGATACGATACAGATCGCAGTGGGTACATTGAAGCTAATGAACTGAAGGGATTCCTCTCAGACCTGCTGAAGAAAGCCAACAGACACTACGATGACCAGAAGCTTCAAGAGTACACACAGACAATActcaaGATGTTTGATCTAAACGGAGATGGGAAGCTGGGCCTGTCTGAAATGGCGAGGCTTCTCCCAGTTCAGGAAAATTTCTTACTGAAATTCCAGGATATCAAGCTGACCTCTGAGCAGTTCAGTGCTATCTTCACATTCTACGACAAGGATGGAAACGGCTACATTGATGAGCAGGAGCTCGATGCTCTGTTGCGCGACCTCTATGAAAAGAACAAAAAGGAGGTGGACACCAAAAACCTGACTGGCTACAAGAAGAGCATCATGGCCCTGTCGGACGGGGGCAAGCTGTACCGCTCCGAGCTGGAGATTGTGCTCTGCAGGGAGCCCATGCTGTGAACCCTGACAACCATTGCTGTCTGTTTTTTGACCTTCATGACCCTATCTGCCCATCCCCAGATCACACCCACCTCCAGCTGCCTGACGACTGTAACCAGGTGCATGTGCCGGGCATTCCCTTTATGAGTTTTGAATGAATGTGCACTGTGAAGCACAAACCAGCTCTCCCTCATGACCCCTGTCGACACTCTTCCCTACAGACTGACGTTGCCTTCGGCTCAATCCCTAAACTCTACATTTAACAAAATGAATAAAGATAATAAAAGGTACTTCTGCTAATTATGATTGCAATGTGAACAGGAGCGGAATGAAAATGAATATAAGATGATTTATTCTCAAT

Function

NR:

description
calretinin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23908 CALB2; calretinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597940.2 True 1294 mRNA 0.47 11 28749882 28763697

Neighbor

gene id symbol gene type direction distance location
pnp6 LOC106573753 coding upstream 7329 28738115 ~ 28742553 (+)
LOC110532150 LOC106560818 coding upstream 215577 28530845 ~ 28534305 (+)
mbtps1 LOC106573750 coding upstream 223680 28500843 ~ 28526202 (+)
pskh1 pskh1 coding upstream 255829 28478880 ~ 28494053 (+)
nrn1la LOC106560823 coding upstream 305512 28387968 ~ 28444370 (+)
LOC110520559 LOC106573756 coding downstream 6271 28769968 ~ 28778739 (+)
LOC110520570 LOC106573757 coding downstream 18200 28781897 ~ 28786756 (+)
LOC110520650 LOC106573761 coding downstream 78895 28842592 ~ 28844660 (+)
LOC110520598 LOC106573760 coding downstream 81037 28844734 ~ 28860495 (+)
LOC110520661 LOC106573762 coding downstream 139994 28903691 ~ 29067795 (+)
G29223 NA non-coding upstream 2224 28743888 ~ 28747658 (+)
G29275 NA non-coding upstream 12147 28737464 ~ 28737735 (+)
G29269 NA non-coding upstream 19655 28728101 ~ 28730227 (+)
G29262 NA non-coding upstream 32429 28717221 ~ 28717453 (+)
G29257 NA non-coding upstream 36007 28713383 ~ 28713875 (+)
G29288 NA non-coding downstream 17061 28780758 ~ 28781315 (+)
G29291 NA non-coding downstream 23534 28787231 ~ 28787472 (+)
G29296 NA non-coding downstream 30476 28794173 ~ 28796143 (+)
G29320 NA non-coding downstream 69864 28833561 ~ 28835039 (+)
G29321 NA non-coding downstream 74996 28838693 ~ 28839112 (+)
G28416 carmil2 other upstream 701520 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 894928 27853757 ~ 27854954 (+)
G28280 NA other upstream 904871 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 1184730 27560102 ~ 27565152 (+)
G27553 NA other upstream 1433365 27257563 ~ 27316517 (+)
mef2aa mef2a other downstream 429032 29188958 ~ 29316547 (+)
G33249 NA other downstream 3086776 31850473 ~ 31850969 (+)
G33284 NA other downstream 3192833 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3687157 32450854 ~ 32452385 (+)

Expression


Co-expression Network