LOC110520559 (LOC106573756)


Basic Information

Item Value
gene id LOC110520559
gene name LOC106573756
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28769968 ~ 28778739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597949.2
GCTGTTGAGCACGTGGGGGTGTGCTGCAATTGACAGCAGAGCTACATAGTACAGTTTGTGGGAACTCAGGAGACGGTTTTCCGTGCGTGTTGTGTTGAGTACCAGCAATGGCCCTGTTGAAATCTAGCAAGATCGTTTCTACCGTCGGTGTACACCCTCCATTGGGTGTGCTCTCCATTCGTGCCAGCTCATGGTGGTCCGAGGTGCAGATGGGTCCCCCTGACCCCATCCTGGGGGTGTCAGAGGCCTACAAGCGTGACACCAACCCTAAGAAGATGAATCTGGGTGTAGGAGCATACCGTGATGACCAGGGCAAACCATATGTCCTCAGCTGTGTTCGCAAGGCTGAAGCTCAGATTGCTGCAAAGAAGCTGGACAAAGAATACCTGGCTATTGGTGGTCTGGGGGACTTTACCAAAGCATGCGCCAAGCTGGCTTTGGGAGACAACAATGAGGTTACCAAGAGTGGCAGGAACATCACTGTCCAAACAATTTCTGGAACTGGGTCCTTGAGAATCGGAGCCAACTTCCTGTCCCGTTTCCATACAGAGGCCCGGGATGTGTACCTGCCCAAGCCCTCCTGGGGGAACCATACACCCATCTTCAGAGATGCTGGGATGCAACTGAAGGCCTACACCTACTATGACCCAAAGACCTGTGGCTTTGACTTCCAGGGAGCCCTGAATGACATCTCTAAAATACCTGAGAAAAGTATCATCATGCTTCATGCCTGTGCCCACAACCCCACAGGAGTGGACCCTCGGCCAGAGCAGTGGAAGGAGATTGCTAACCTGGTGAAGAAAAGGAACCTCCTAGTGTTCTTTGACATGGCCTACCAGGGCTTTGCCAGTGGTGATATTGACCGTGATGCCTGGGCTGTCCGTTATTTCATTGAGCAAGGCCACAACATTGTGCTCTCTCAGTCCTTTGCTAAGAACATGGGTCTCTATGGTGAGCGTGTTGGGGGCTTCACTGTCGTGTGTAAGGATGCTGAGGAGGCCAAGCGTGTGGAGTCCCAGCTGAAGATCCTCATTCGGCCCATCTACTCCAACCCTCCCATGAACGGGGCGCGCATCGCTGCCACCATCCTCAATACACCAGACCTGTACAAAGAGTGGCTGGGGGAGGTGCATGGCATGGCTAACCGCATCATCACAATGAGGGAGCTGTTAGTGGCCAACCTGAAGAAGGAGGGCTCCACTCAGAACTGGCAGCACGTCATTGACCAGATTGGCATGTTCTGCTTCACAGGGCTGAAGCCTGAACAGGTGGCGCGCCTCACAAAGGAGTTCTCCGTCTACATGACAAAGGATGGGCGTATCTCCATGGCTGGCGTCACCTCTGGCAATGTGGGTTACCTTGCACAAGGTATCCATGCAGTGACCAAGTGAGATGGCTAACCAGGAGTCACACCGTAGTCACCACCAGAGGAAGGAGGGGCGGTAGCTTCAGACAGGAAAATCAAAACAACTTATGTAAATGAaccctctcctctgctttccttTAGGGAAAGAATCAAACGTAATAAGATACCATAgggttattttattttgaattttcTGTTGGCATTGTCTAGATATTGTATGTTGGACTTTCTGTGACTAGGTTTTTAATGTGCGGTTCCCTGAAAAAATATTCATGGAATTCTTGAATCTTTTTTTTTACCCTCCCTCAGACATGCATGCTGTGGTCATGAGCTCAAAATATCTTGTGTAAGTCATACTTGACAATGAAAACTAACAAGCACAATATCACTGTTTGGAATCATGTCTTATATTGCAGCATGTCCTCTTACTTGGCCTGAGCACACCCTGTATCTAAGAACTGTGCTCAACTATTGGCTGTGATATGGAACACCAAAGTAATAATGGTTAAGACATTTTTCTAGAAAATTCTTTACTAAAAATACTGTCTCTTTAAGGTAATTGTATTGAAATGTGCGTCTAATTTATTAAGGATTAATTTACAAAACCTTTTTCAAAAAAAGATGTCAGGTGCTGCAAACCTTTGTTTAAACTTTAATGCCAGTGAAACCTTTCTAGGTGATGGTACTGGGGTCATGGCACTTGTTTTATGTGGGATGATATGTGCTGCATGGAGTCCCTGGTTGTGATGATCCGCCAGCCACAATGTGTGTTAAGGATGTTATTTTGCTGTGTAACGGAAGTGCACTGTCTAACAATCAACATCTGCCACATCTCCCATTGATACTGTACCATTTAATCAAACAgattatttatatacactaccgttcaaaagttttttttttgtccactaaaatatcatcaaattgatcagacatacaatgtagacattgttaggGTTGTAAa

Function

NR:

description
aspartate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14455 GOT2; aspartate aminotransferase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597949.2 True 2330 mRNA 0.47 10 28769968 28778739

Neighbor

gene id symbol gene type direction distance location
LOC110520547 LOC106573754 coding upstream 6271 28749882 ~ 28763697 (+)
pnp6 LOC106573753 coding upstream 27415 28738115 ~ 28742553 (+)
LOC110532150 LOC106560818 coding upstream 235663 28530845 ~ 28534305 (+)
mbtps1 LOC106573750 coding upstream 243766 28500843 ~ 28526202 (+)
pskh1 pskh1 coding upstream 275915 28478880 ~ 28494053 (+)
LOC110520570 LOC106573757 coding downstream 3158 28781897 ~ 28786756 (+)
LOC110520650 LOC106573761 coding downstream 63853 28842592 ~ 28844660 (+)
LOC110520598 LOC106573760 coding downstream 65995 28844734 ~ 28860495 (+)
LOC110520661 LOC106573762 coding downstream 124952 28903691 ~ 29067795 (+)
LOC110520673 LOC106573765 coding downstream 295616 29074355 ~ 29084730 (+)
G29223 NA non-coding upstream 22310 28743888 ~ 28747658 (+)
G29275 NA non-coding upstream 32233 28737464 ~ 28737735 (+)
G29269 NA non-coding upstream 39741 28728101 ~ 28730227 (+)
G29262 NA non-coding upstream 52515 28717221 ~ 28717453 (+)
G29257 NA non-coding upstream 56093 28713383 ~ 28713875 (+)
G29288 NA non-coding downstream 2019 28780758 ~ 28781315 (+)
G29291 NA non-coding downstream 8492 28787231 ~ 28787472 (+)
G29296 NA non-coding downstream 15434 28794173 ~ 28796143 (+)
G29320 NA non-coding downstream 54822 28833561 ~ 28835039 (+)
G29321 NA non-coding downstream 59954 28838693 ~ 28839112 (+)
G28416 carmil2 other upstream 721606 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 915014 27853757 ~ 27854954 (+)
G28280 NA other upstream 924957 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 1204816 27560102 ~ 27565152 (+)
G27553 NA other upstream 1453451 27257563 ~ 27316517 (+)
mef2aa mef2a other downstream 413990 29188958 ~ 29316547 (+)
G33249 NA other downstream 3071734 31850473 ~ 31850969 (+)
G33284 NA other downstream 3177791 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3672115 32450854 ~ 32452385 (+)

Expression


Co-expression Network