LOC110520570 (LOC106573757)


Basic Information

Item Value
gene id LOC110520570
gene name LOC106573757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28781897 ~ 28786756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597967.2
TGCTGGTGGAACAATGAGCCAGAGAGTAATGTGAAACCGTCTATCTACAAATGTCAAGGCTGCTTGTGGAGAAAGTACAATAAGACAAGGCAGTCTGGAAACTTCCTTAGAAACTAATCAGACCTGTTAAACCAGGTGGTGGATAGGATCAGTAAGTCATTTTGCCAGAGGATGAATGTATGGTAATGGAAACACAGGTGATAGTGAATGGAGAGGGACAGACGGATGATGTCATATGATGGCAGAGAGACATGCGTGTCCTTCCCACTGTAGACCTGTCTATTGGGGACCTACGCATGCCCTTCAATGAAGAGGTCAAGTACTGTATCCTGGGAATCTCTGTAACCCTCTTCCTGATTGCTATGGGCATTCTGGTGTGGCAGTTATACCACTACTGCTCACAGGCTCCAAAGGAACCTGTGGATGACTTACTTTCATCTGATGGAAAGCCAGCAAAGACAGAAGACCTCTACATGGAAACCCAGAGGCCTAATTTTAAGGTGGAGAAGCTCCATGAAGAGGCACAGAGGTTGAGCCGTTGCCTGTCCATGGGCAGCCATGTGGAGCTGCCTGGCCTGGGGAACCAGCTGAAGGGCTCCCTGCGCTTCTCCCTCTACTATGACCAGCTGCAGTCCAGACTGGTGGTCACCGTCCTGGAGGCCCGGGGCCTGCCGGTCAGGGACTTCAGCCGCAGTGTGGACCCCTTTGTGAGGGTTCGGCTGCTATGGGCCAAGCATGAtaatgaggaggagaaggaggagcagtcctctccttcactgcagtgTGTGCTCCATGAGTGGCAGTCCCGTATGGTGAAGGACAGCAGCAGCCCTACGTTTGGGGACCAGTTCTCCTGCTctatggaggaggaggatgtcccTCACACCACCGTCAGGTTTGAGGTCAGAGACTTTGATAAGTTCTCCAGGCATGGGTTCTTGGGAGAGGTCAGAGTTTCTCTGTGTGATGTGAAAATCTCATACCCTCTTGAAGTACTGGAGGATCTACAGACACCACAAAAGGACATGGTTGGAGAGGTGCTTCTCTCTCTAAAGTACCTCCACACCCTCCAGAGACTGGAGGTGGGTCTGCTGAAGATCAGGGCACTGCCTCAGCAAAGTCAAAAAGACAAAGTTCGGTTGTATGCCCGGATCAGTGTCCTCTGCAACCAGTTCAAGCTGCGGCACCAGAAGTCCACTGCTAAGACCCTGTGTGAAGTGACCGTCTTCAACGAAGTCATGATGTTCACCCTGCCAGACCCACAGATCAGGGCGTGCTGCATTGTGGTCTCTGTGTACGAGATCCATGCAGCCAGGAAGTCATCCAAACGCCTGGTTGGCCAGGTCACCtttggaaagggaaagaggtcAGAGGAGGAACACTGGTGTTTGATGATGCGATCAATTTGTCAGCCAATAGCAAAGTGGCATCCATTGTTGATCTGAGGTCAGCCAAGCCCCTTACTTTGACTATGTTCTTGTAATGTACAGATGGTTTTCACAAAATCTAAGATGAAACCTCATACTCTTCCATGTATAGTGACTATGCAGGACAAGCAAATAGAAAGTGGCAAATTACAAGAATTTGGTATCTTGATAGATGAGTGTCTCACCTTTAAACCCCAAGTCGAAGGTCTTGTGAAAAAGCTTAGGCTCAAGTTTAGTTTTTATTTTCATAATAAGTCATGTTTTTCTTTTAAAGTGCGAAAGAGGCTTGTTTCCGATTCTTTTGTCCCTGTAATTGATTATGGTGATATCTTGTACATGTATGCCCCTGTGGAGTCATTATGTATGCTGGACACTGTGTACAATGGGGCGCTGAGGTTTATTACTGACTTTAAAGCGTTCACACATCACTGTATCCTCTATATGAGAGTGGGCTGGCCTTCATTAGCTCTTCGGAGATTACATCATTGGtatttataaggccatattgaAACAGCTCGCCTGTGCTCACTTGACTGTGTTTTGGTGATTGTGTCTAAGGCCCGTACGGAGAAAGGGAGAAAAACATTCCAGTTCCAAATGAAAGGAGCTTGTCCCTTTATATTAGTTAATAGCTAGGTTAACACTATAAGGGGAAATTATGGAAAGTTATGGAAAATGAAGTGGGGGGCTGTCAATATTTTGACTCCTAGTTGCACCACACTTTCCCAAATCATCTTGCTGTTAAGTGTGTAAATTGGTGTTTTTTAAACTGTAGTTCTTTGTGTTTTACGTTGTAAACGTGTCTGCAACTCTGTGTGCTGCTATTTTGGCCATGTCTCTCTTGTAAAAGAGTTTAAATCATCTCAATGAGACCGAACTGgtaaaataaagataaaataaaaaatggaaatgtGTGGAGGA
>XM_021597960.2
GCTGGTGGAACAATGAGCCAGAGAGTAATGTGAAACCGTCTATCTACAAATGTCAAGGCTGCTTGTGGAGAAAGTACAATAAGACAAGGCAGTCTGGAAACTTCCTTAGAAACTAATCAGACCTGTTAAACCAGGTGGTGGATAGGATCAGTAAGTCATTTTGCCAGAGGATGAATGTATGGTAATGGAAACACAGGTGATAGTGAATGGAGAGGGACAGACGGATGATGTCATATGGGTTTTAGATGGCAGAGAGACATGCGTGTCCTTCCCACTGTAGACCTGTCTATTGGGGACCTACGCATGCCCTTCAATGAAGAGGTCAAGTACTGTATCCTGGGAATCTCTGTAACCCTCTTCCTGATTGCTATGGGCATTCTGGTGTGGCAGTTATACCACTACTGCTCACAGGCTCCAAAGGAACCTGTGGATGACTTACTTTCATCTGATGGAAAGCCAGCAAAGACAGAAGACCTCTACATGGAAACCCAGAGGCCTAATTTTAAGGTGGAGAAGCTCCATGAAGAGGCACAGAGGTTGAGCCGTTGCCTGTCCATGGGCAGCCATGTGGAGCTGCCTGGCCTGGGGAACCAGCTGAAGGGCTCCCTGCGCTTCTCCCTCTACTATGACCAGCTGCAGTCCAGACTGGTGGTCACCGTCCTGGAGGCCCGGGGCCTGCCGGTCAGGGACTTCAGCCGCAGTGTGGACCCCTTTGTGAGGGTTCGGCTGCTATGGGCCAAGCATGAtaatgaggaggagaaggaggagcagtcctctccttcactgcagtgTGTGCTCCATGAGTGGCAGTCCCGTATGGTGAAGGACAGCAGCAGCCCTACGTTTGGGGACCAGTTCTCCTGCTctatggaggaggaggatgtcccTCACACCACCGTCAGGTTTGAGGTCAGAGACTTTGATAAGTTCTCCAGGCATGGGTTCTTGGGAGAGGTCAGAGTTTCTCTGTGTGATGTGAAAATCTCATACCCTCTTGAAGTACTGGAGGATCTACAGACACCACAAAAGGACATGGTTGGAGAGGTGCTTCTCTCTCTAAAGTACCTCCACACCCTCCAGAGACTGGAGGTGGGTCTGCTGAAGATCAGGGCACTGCCTCAGCAAAGTCAAAAAGACAAAGTTCGGTTGTATGCCCGGATCAGTGTCCTCTGCAACCAGTTCAAGCTGCGGCACCAGAAGTCCACTGCTAAGACCCTGTGTGAAGTGACCGTCTTCAACGAAGTCATGATGTTCACCCTGCCAGACCCACAGATCAGGGCGTGCTGCATTGTGGTCTCTGTGTACGAGATCCATGCAGCCAGGAAGTCATCCAAACGCCTGGTTGGCCAGGTCACCtttggaaagggaaagaggtcAGAGGAGGAACACTGGTGTTTGATGATGCGATCAATTTGTCAGCCAATAGCAAAGTGGCATCCATTGTTGATCTGAGGTCAGCCAAGCCCCTTACTTTGACTATGTTCTTGTAATGTACAGATGGTTTTCACAAAATCTAAGATGAAACCTCATACTCTTCCATGTATAGTGACTATGCAGGACAAGCAAATAGAAAGTGGCAAATTACAAGAATTTGGTATCTTGATAGATGAGTGTCTCACCTTTAAACCCCAAGTCGAAGGTCTTGTGAAAAAGCTTAGGCTCAAGTTTAGTTTTTATTTTCATAATAAGTCATGTTTTTCTTTTAAAGTGCGAAAGAGGCTTGTTTCCGATTCTTTTGTCCCTGTAATTGATTATGGTGATATCTTGTACATGTATGCCCCTGTGGAGTCATTATGTATGCTGGACACTGTGTACAATGGGGCGCTGAGGTTTATTACTGACTTTAAAGCGTTCACACATCACTGTATCCTCTATATGAGAGTGGGCTGGCCTTCATTAGCTCTTCGGAGATTACATCATTGGtatttataaggccatattgaAACAGCTCGCCTGTGCTCACTTGACTGTGTTTTGGTGATTGTGTCTAAGGCCCGTACGGAGAAAGGGAGAAAAACATTCCAGTTCCAAATGAAAGGAGCTTGTCCCTTTATATTAGTTAATAGCTAGGTTAACACTATAAGGGGAAATTATGGAAAGTTATGGAAAATGAAGTGGGGGGCTGTCAATATTTTGACTCCTAGTTGCACCACACTTTCCCAAATCATCTTGCTGTTAAGTGTGTAAATTGGTGTTTTTTAAACTGTAGTTCTTTGTGTTTTACGTTGTAAACGTGTCTGCAACTCTGTGTGCTGCTATTTTGGCCATGTCTCTCTTGTAAAAGAGTTTAAATCATCTCAATGAGACCGAACTGgtaaaataaagataaaataaaaaatggaaatgtGTGGAGGA

Function

NR:

description
synaptotagmin 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597967.2 False 2348 mRNA 0.46 7 28781897 28786756
XM_021597960.2 True 2355 mRNA 0.46 7 28781898 28786756

Neighbor

gene id symbol gene type direction distance location
LOC110520559 LOC106573756 coding upstream 3158 28769968 ~ 28778739 (+)
LOC110520547 LOC106573754 coding upstream 18200 28749882 ~ 28763697 (+)
pnp6 LOC106573753 coding upstream 39344 28738115 ~ 28742553 (+)
LOC110532150 LOC106560818 coding upstream 247592 28530845 ~ 28534305 (+)
mbtps1 LOC106573750 coding upstream 255695 28500843 ~ 28526202 (+)
LOC110520650 LOC106573761 coding downstream 55836 28842592 ~ 28844660 (+)
LOC110520598 LOC106573760 coding downstream 57978 28844734 ~ 28860495 (+)
LOC110520661 LOC106573762 coding downstream 116935 28903691 ~ 29067795 (+)
LOC110520673 LOC106573765 coding downstream 287599 29074355 ~ 29084730 (+)
mef2aa mef2a coding downstream 402202 29188958 ~ 29316547 (+)
G29288 NA non-coding upstream 582 28780758 ~ 28781315 (+)
G29223 NA non-coding upstream 34239 28743888 ~ 28747658 (+)
G29275 NA non-coding upstream 44162 28737464 ~ 28737735 (+)
G29269 NA non-coding upstream 51670 28728101 ~ 28730227 (+)
G29262 NA non-coding upstream 64444 28717221 ~ 28717453 (+)
G29291 NA non-coding downstream 475 28787231 ~ 28787472 (+)
G29296 NA non-coding downstream 7417 28794173 ~ 28796143 (+)
G29320 NA non-coding downstream 46805 28833561 ~ 28835039 (+)
G29321 NA non-coding downstream 51937 28838693 ~ 28839112 (+)
G29322 NA non-coding downstream 52797 28839553 ~ 28840172 (+)
G28416 carmil2 other upstream 733535 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 926943 27853757 ~ 27854954 (+)
G28280 NA other upstream 936886 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 1216745 27560102 ~ 27565152 (+)
G27553 NA other upstream 1465380 27257563 ~ 27316517 (+)
G33249 NA other downstream 3063717 31850473 ~ 31850969 (+)
G33284 NA other downstream 3169774 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3664098 32450854 ~ 32452385 (+)

Expression


Co-expression Network