LOC110520661 (LOC106573762)


Basic Information

Item Value
gene id LOC110520661
gene name LOC106573762
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28903691 ~ 29067795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598084.2
GCTTACTCTTGTTTACAGCAGTGATTCTACGGACTGGAGACCGACAACGAGGGCAAGTGATAGGATTGCTGCTTACTGGAGCTATACGGGAAAACTAAAAAATACACATCATCACCCATAAATGGCTCACAGGACATAACGGAAGCTTGAGTTTGGTGCAAGTATACCATACTACACCCCAACCGAAGCTCTTAAACTTGATAGTCTACTGTTGCGTGGCATAGGTATTTTTTTCAGCCGCAAAGGAGACGATTGACTGCGTTAACGGCGAAAACAGACAGTGCAGGGGGCGGGAGAAAAGGGGGGTGAGATTGGTGAAACAATTTCTGTTGTGGAGGATATTTTGGATTGCGCCCTGTTGGAAAGGCTCATTGAACGGAGTTACGTTCTCATTCATTTCCCATCTCAGCCACCACCCTGTGGAACTGGCCGTAGATTCTCCTTCTAATTCTCATCACTCAGACGGAAATGAATGATAGAAGATTGGAATTCCCTTTGGTCTACTACAAGTGAACGTTGTTCGATTGCGAGTCATAAAAACTCCTGCGCACAATTACTGGGGTTTCAAGAAATGGAGACTGAGGATGCGGATTACCATCATCTGTCGAGTGAAATCAGTGGCACGAATGTCTTGCCAGCAATCCTTAAATCATTGTGTCGTTGGCAAGAATAACGAattgttttaatttatttaatcttatatatatatatatatatattaaaatatataggcctaggcTATATATAATTCCACCAAAACACAAAACTTGGAAAAATAGTAGGCTATACTCTGAACACGAATTTGTATCTACCTGTCAAACAGTGTAGCCTATTTGCTGGaccacgtttttttttttttcttttactTTTTGTGAACTCGGTGGCATCATCTCCCTTTTCCACTATTTTGGAATTAAGTTATTTGCTTTTTAGAGAGGTGAATAATTAATTGATCAGGAATGAGATCTGGGACAGAGAGGAATACTTTGACCTTGTTTTGGGGTCTGACGCTATCTGTCTCCACTATCTACCTATGGACGGCAAATGGAGAAATCTGTGGTCCAAGTATTGACATACGTAATGACATCAGTGAGTTCAAGCGTCTGGAGAACTGTACGGTGGTGGAGGGCTTCCTGCAGATACTCCTCATCGGAGACAAGACCAACAACCTCAACCAGGAGCTCTTCCGCTCCCTCAGCTTCCCCAAGCTGACCGTCATCACCGACTACCTGCTCCTGTTCCGGGTCTCCGGCCTGGACAGCCTCAGCACGCTCTTCCCCAACCTCAACGTCATTCACGGACGCAACCTCTTCTACAACTATGCCCTGGTTATCTTTGAGATGACCAGTCTGAAGGACATCGGCCTGTACAACCTGAGGAACATCACGCGAGGGGCCATCCGGATCGAGAAGAACCCGGAGCTCTGCTACCTGGACTCTGTGGACTGGTCTCTCATCATGGACGCAGAGTTTAACAACTTCATTGCGGGGAACAAGCAATCCAAAGAGTGTGGTGATGTGTGTCCAGGCATCACGGAGGACAACGCTCAGTGCATCAAGACCAGCTTTAACGGCAACTTTAACTCTCGCTGCTGGACATCCAACCACTGCCAGAAAGTGTGCCCAGAGAAGAAGTGTGAGCGGCGGGCATGTACGGACGGTGGTGAGTGTTGCCATGCCCAGTGCCTGGGAAGCTGTACGGAGCCGGACGACGACATGGCCTGCGCAGCCTGCCTGCACTACTACCACGAGGGCCGCTGCGTGCAGGACTGCCCCCCAGACACTTACAAGTTTGAGGGCTGGCGCTGCATTACCATGGACCTGTGTGAACATGTGCACCTGGCCGGTGACTTTCACTTTGTCATCCACGGAGGGGAGTGCATGCCTGAGTGTCCATCAGGCTTCACACGCAATGAGAGCAATAAtcACAGTATGTTCTGCAGTGCCTGTGATGGCTTGTGTGATAAGATCTGCGACTCCAAGACCATCGACTCAGTGGATGCTGCTCAGTCTCTAATGGGCTGCACAGTCATCAAAGGCAACCTGCAAATCAACATCCGCCGTGGCaatAACATTGCCTCAGAGCTGGAGAGTTTCATGGGCCTGATCCAGACAGTGACAGGCTATGTGAGGATCCGACATTCCCACACACTAGGATCGCTCTCCTTCCTCAAGAGCCTGCGCTACATCAACGGGGAGGAGCTCATGGAAGGGATGTATGCTTTTTCTGCCATTGACAACCAGCGCCTGCAGTACCTGTGGGACTGGACCCAACACAACCTGACCATCAGGGCTGGGAGGCTGTCCTTCCGCTTCAACCCCAAACTCTGCATGTCTGAGATCCACAATATGTGGGAGAAGACTGACATCACTGAGAAGTTTGAGGAGGGCGATTTCCGCAACAATGGAGACAGAGCAAGCTGTGAGAGTCATATCCTGAAGTTCAAGTCCAACAGCACTATGAGTAACCGGATCAAGCTGACTTGGGAGCGCTACCGACCACCAGACTACAGAGACCTCATCAGCTTCATCGTCTACTACAAGGAAGCACCGCACCAGAACATCACAGAGTTTGATGGCCAGGATGGGTGTGGCTCCAACAGTTGGAACATGGTTGACGTGGACCTACCGCAAGACAAAGAGATAGACCCTGGTGTGCTGCTGTCCCCACTGAAGCCCTGGACCCAGTACGCCATCTTTGTCAAGGCCATCACCCTGGTGGTGGAGGACAAACACATCCCTGGAGCCAAGAGTGACGTGGTCTATATACGCACCAGCCCCTCAGAGCCGTCTATGCCAATGGATACCCGGGCGTATTCCAACTCGTCCTCCAAGCTGGTGGTGAAATGGTCACCTCCCCTCAACCCTAACGGCAATCTCACCTTTTACCTGATCCGCTGGCAGCAGCAAGCTGAAGACAAGGAGCTGTACCAACACAACTACTGCTCCAAAGAGCTGAAGATCCCCATTAGAATCTCAGCCACGGGGTTGGCAGACATGGAGGACGACACCAAGCCCACCAAGCCTGACCTGTCTGGGGGGGACAAGGGCCCCTGCTGCCCCTGCCCCAAGACCAAGGAGGACCTGAAGGCAGAGATAGATGACGCATCCTACCGCAAAGTCTTTGAGAACTTCCTGCACAACTCCATCTTCACCCCCAGGCCCCCCGACCGGCGGCGTAGGGATCTATTTGGGGTGGCTAACAGCACCTTGGCGCGGGGTGGCAACACCACAGGCCTGGAGGGTAATGGGACAGACGGAGAATCCCCCGAGAGGGAGTTCCCCTTCATGGAGGACCGGAGCAAGACAGAGTTTATAGAGATCACCAACCTACAGCCCTTCACTGTCTACCGCATCGACATCCACGCCTGTAACCAGGAGGTCCGTCGCTGCAGTGCTGGAGCCTTCGTCTTCTCCAGGACCAAACCTGCAGACAAAGCGGATGACATGCCAGGCACGGTGAATcaggagagggatgagaaggTGGAGGGGTCGGTGCTGCTGAGGTGGCCGGAGCCTGTCAACCCCAACGGTCTCATCCTAATGTATGAGATTAAGTTTCGCCAAGGCACCGAGccTGAGAAACATGAGTGTGTGTCACGCCAGCACTACAGAGTGCACAAAGGAGCTCGTCTGACCAACCTAGGCTCTGGGAACTACTCTGCCCGCGTGCGCGCCACCTCCCTGGCAGGAAACGGGTCCTGGACTGGGCCAGTGTCCTTCTACGTAACCCCACGCACACGGGACTACGACATCACGTTCTATCTGGTCATCATCATCCCCATCATAGTGATAATTCTTATCGCCAGCCTCATTACTGCACTCTTTTTTATCAACAAAAAAAGGAACAGTGACAGGCTGGGGAATGGTGTCCTCTATGCTTCTGTCAACCCTGAGTACTTCAGTGCTGCTGAGATGTATGTTCCAGATGAGTGGGAGGTGGCCAGGGaaaagatcaccatgcacaaggAGTTGGGCCAGGGTTCCTTTGGCATGGTGTACGAGGGCCTCGCTAAGGGCGTGGTTAAAGACGACCCAGAGACGCGCGTGGCCATCAAGACGGTCAACGAGTCAGCCAGCatgagggagaggatagagtTCCTCAATGAGGCTTCCGTCATGAAGGAGTTCAACTGTCACCACGTGGTGCGTCTGCTGGGCGTGGTCTCTCAGGGACAGCCCACCTTGGTGATAATGGAGCTGATGACCCGTGGAGACCTGAAGAGTCACCTGCGCTCGCTCCGTAAAGAGAACACGTCCAGCCAGGTTCTGCCCCCGCTGAAGAAGATGATCCAGATGGCAGGGGAGATTGCGGACGGCATGGCATACCTCAACGCCAACAAGTTCGTCCACAGAGACCTGGCTGCCAGGAACTGCATGGTGGCGGAGGACTTCACCGTCAAGATCGGGGACTTTGGCATGACGCGAGACATCTACGAGACGGATTACTATCGGAAAGGAGGGAAGGGCCTTCTGCCAGTCCGCTGGATGTCCCCAGAGTCGCTGAAAGACGGAGTGTTCACCACAAACTCTGATGTCTGgTCATTTGGGGTGGTGCTGTGGGAGATTTCTACCTTGTCTGAGCAGCCGTATCAGGGCATGTCCAACGAGCAGGTGCTGCGTTTCGTCATGGAGGGAGGACTCCTGGACAAGCCTGACAACTGTCCTGACATGCTGTTTGAGCTGATGCGGATGTGCTGGCAGTACAACCCCAAGATGCGTCCTTCCTTCCTGGAGATCATCAACAGCCTCAAGGAGGAGCTGGAGCCTCCGTTCAGTGAGATGAGCTTCTTCTTCAGCGAGGAGAACAAGCCCCCGGACACTGAGGAGCTGgacatggaggtggagaacatggAGAACGTGCCACTGGACCCTGCACCCAGCAGACCCCCCACTGCTGTTCCTCTGCCCTCCCAGGGACCCATGGGGGCCACAGGGGGCTCagcaccccctcctccccagcaGTTATCCCCAATGCAATGCCCTTCTAATACCCTGAAGGGACCTGGCTCTCCCTCCACCTCAGTCCCGGCTGCCTCTGTCTCGGCCTCCCCAGGCCTGGCCTTGGACAAGCACTCAGGACAGATATCGGCCAACGGGCCAGTGGTGGTGCTGCGGCCCAACTTTGAGGACACACAGAACTACGCTCACATGAACGGGGGGCGCAAGAATGAGCGGGCGCTGCCACTGCCCCAGTCTTCAGCCTGCtgatcccctcctcccccctcagccAGATCACCCCACTCCTTCTCTTCTCACACAGGGTAACATAAACTTCTCCCCTGTTTTAGTTATAATGGGGTGATGGATGAGTGAATAACTgacacattatactactctactgcAGTAGGAGTCTTtaatttttaaataataatatcaAGATTTATTATTGAATACCAAGACTGAGAAACAGCACAGAAACCTGCTAAAGCGTTTGGAGTATGGTGACTCAGAACGAACAACACTGGGAAGCTCTAGTGTTTACTTCTTATTTAGTATTTGTTACTTTAAAAACATCATTAAAGAAGGACATCATCAAATATTCCCTGACTGACAGGTATTGTAAGTGAGAGACAAtaactttaaaaaataatttgaaGCATATCTGCTAGAAAATCCAACAGACGAGCTCATTTAGATCATTTCTGAGAGAATAATGTGTATATCTGAGTGTGTTTatactgccttcagaaagtattaagaccccttgactttttccccaaaaaattacgttacagccttattctaagatatttttaccctataatgacaaagcaaaaatagattTAGCAAGTATTCCTGCCCTTTGTTATGAGATgcatactgtttccattgatcatccttgagatgtttctacaacttgattggagtcaacgagtggtaaattcagttgattgaacgtgatttggaaaggcacacacctgtctatataaggtcccacagttgacagtgcacgtcagagcaaacaccaagcccTGAGATTGTCCGTACAGTTCCAGgacagggttgtgtcgaggcacagatcttagGAAGGGTAGCAAAATAATTAtgccgcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggcaccaccaagactcttcctagagctggctgcccggccaaactgagcaatcggaggaggtgacc
>TU33696
ttacagccttattctaagatatttttaccctataatgacaaagcaaaaatagattTAGCAAGTATTCCTGCCCTTTGTTATGAGATgcatactgtttccattgatcatccttgagatgtttctacaacttgattggagtcaacgagtggtaaattcagttgattgaacgtgatttggaaaggcacacacctgtctatataaggtcccacagttgacagtgcacgtcagagcaaacaccaagcccTGAGATTGTCCGTACAGTTCCAGgacagggttgtgtcgaggcacagatcttagGAAGGGTAGCAAAATAATTAtgccgcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggcaccaccaagactcttcctagagctggctgcccggccaaactgagcaatcggaggaggtgaccaagaaccggatggtcactctgacagagctccaaagttcctctgtggagatgggagacaaccatctctgcagcactccatcagacATTTttggttgagtggccagacggaagccactccttagtaaaaggcacatgacagctcgcctggagtttgccaaaaggcacacaaaggactctcaaaccatgagaatcaagattctgtggtctgatgaaccaagattgaactctttggcctgaatgccaagggtcacatctggaggaaacctggtaccatccctgcggtgaagcatggtgatggcagcatcatgctgttgggatgtttttcagcagcagggagactagtcagggtcaaggcaaagatgaacggagcaaagcacagagagatccttgatgaaaacctgctcgggACAAGTCTAAGCACGCAGCCAAgttggaacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacctgaccaaacatctctggagagacctgaaaatacctgtgcatcgacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactcctcaaatacatttgtgccaagcttttagcatcatacccaagaagaattgaggctgtaattgctgccaaagttgcttcaacaaagtactgagtaaaggatctgaatacttatgtaaatgtcattacattttttcatttttaatagatttgctaaaatgtctaaacctgtttttgcttcgtcattatggggtattgtgtgtagattgatgaggattttttaaaatccattttagaatcaggctgtaacgtaacaaaatgtggaaaaagacgaGGGGTCTGAACacattccaaatgcactgtatttatatACCAACACATGATTCTCTCAACAGCATGATATAGCTCCTCTTAAAAACCTATGGTCATCGGTATACTTCTCCCACATTTCAGACATTGATGTGTTCTGGACTAGGATAATTGGTTTTCCTGTAAATATTCCTGGAAGGATTTCAGGAGTGGGTAGATATCATAGAGGGAGGGCAATTGTGAATTGGACACATTTTTTGTCAAATCAAAGTTAGTAGTTTTCTCCTTCTTGCTCTTCATTTGTCCTATTGATTTGACATGAAGAGAAACATAATCAAGCATCCTAAAAAACCCAAATTGCTGTTTATTTTGTTTTCTACTTCACAATTACAATCAAATTGTAAAAGGAATTTGCCTGTTTTCTCTTGTTTTTTTTCCTCCGAGTTACATCAGAGCCCTTATTGGATTCCTCTTCTATTGTATGTGTCATCTGAGAGATGAAAACACCAACATCACCAACAGAGACATTTAGCGAAAAGGACTTGGCGCCAAAAATGCAACACATACAGTTTCAAACCTGAAGTGGAAGGTATTGGATCAGTTCTAATACAAGGAGAACTAAAGGACTCAACAGAACTCCACCTTGTGACTATACATACGTCTGCTAAAAGCATGCGAGGCATTGTACGCAGCAGATCTTTTTTAGACTTGTCATTAGTCTCTCTGTACAATTCAAACATTTATATAAAGGTCTTACAGTTGTATGTTAGACCTTAGGATCATTTTCACACACATCAATGGTTTGTCACTTTTATAACTTTTGTACTGTTCAGATGTTCACCTGTACAGAATGAAGCTGcta

Function

NR:

description
TC1-like transposase

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048009 insulin-like growth factor receptor signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0003007 heart morphogenesis biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043560 insulin receptor substrate binding molecular_function
GO:0005520 insulin-like growth factor binding molecular_function
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598084.2 False 6174 mRNA 0.51 21 28903691 29066098
TU33696 True 2140 TUCP 0.40 1 29065656 29067795
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Neighbor

gene id symbol gene type direction distance location
LOC110520598 LOC106573760 coding upstream 43196 28844734 ~ 28860495 (+)
LOC110520650 LOC106573761 coding upstream 59031 28842592 ~ 28844660 (+)
LOC110520570 LOC106573757 coding upstream 116935 28781897 ~ 28786756 (+)
LOC110520559 LOC106573756 coding upstream 124952 28769968 ~ 28778739 (+)
LOC110520547 LOC106573754 coding upstream 139994 28749882 ~ 28763697 (+)
LOC110520673 LOC106573765 coding downstream 8257 29074355 ~ 29084730 (+)
mef2aa mef2a coding downstream 122860 29188958 ~ 29316547 (+)
mctp2a LOC106573768 coding downstream 255574 29321672 ~ 29361563 (+)
LOC110520750 NA coding downstream 399911 29466009 ~ 29490205 (+)
lysmd4 LOC106573773 coding downstream 997096 30063194 ~ 30083394 (+)
G29443 NA non-coding upstream 5910 28884515 ~ 28897781 (+)
G29436 NA non-coding upstream 21204 28882164 ~ 28882487 (+)
G29328 NA non-coding upstream 57232 28846254 ~ 28846459 (+)
G29323 NA non-coding upstream 62866 28840608 ~ 28840825 (+)
G29452 NA non-coding downstream 1898 29067996 ~ 29072647 (+)
G29455 NA non-coding downstream 22078 29088176 ~ 29089700 (+)
G29568 NA non-coding downstream 35074 29101172 ~ 29101372 (+)
G29569 NA non-coding downstream 35379 29101477 ~ 29101684 (+)
G28416 carmil2 other upstream 855329 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 1048737 27853757 ~ 27854954 (+)
G28280 NA other upstream 1058680 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 1338539 27560102 ~ 27565152 (+)
G27553 NA other upstream 1587174 27257563 ~ 27316517 (+)
G33249 NA other downstream 2784375 31850473 ~ 31850969 (+)
G33284 NA other downstream 2890432 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3384756 32450854 ~ 32452385 (+)
G33768 NA other downstream 3546975 32613073 ~ 32617684 (+)
G29558 NA non-coding upstream 1123 29064324 ~ 29064533 (+)
G29552 NA non-coding upstream 7620 29057734 ~ 29058036 (+)
G29551 NA non-coding upstream 9106 29056344 ~ 29056550 (+)
G29545 NA non-coding upstream 29442 29035966 ~ 29036214 (+)
G29543 NA non-coding upstream 31399 29034044 ~ 29034257 (+)

Expression

LOC110520661(LOC106573762) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110520661(LOC106573762) Expression in each Bioproject

Bar chart with 21 bars.
LOC110520661(LOC106573762) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network