Gene
RNA
| Item | Value |
|---|---|
| gene id | mef2aa |
| gene name | mef2a |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 29188958 ~ 29316547 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mef2a | Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy. |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036975371.1 | False | 5426 | mRNA | 0.42 | 11 | 29188958 | 29316542 |
| XM_021598107.2 | False | 5352 | mRNA | 0.43 | 11 | 29192689 | 29316542 |
| XM_021598113.2 | False | 5352 | mRNA | 0.42 | 11 | 29192689 | 29316542 |
| XM_021598130.2 | False | 5328 | mRNA | 0.43 | 10 | 29192689 | 29316542 |
| XM_021598137.2 | False | 5328 | mRNA | 0.42 | 10 | 29192689 | 29316542 |
| XM_021598145.2 | False | 5217 | mRNA | 0.42 | 10 | 29192689 | 29316542 |
| TU34064 | False | 1855 | TUCP | 0.47 | 4 | 29192729 | 29253218 |
| TU34063 | True | 3415 | lncRNA | 0.46 | 1 | 29313133 | 29316547 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520673 | LOC106573765 | coding | upstream | 104228 | 29074355 ~ 29084730 (+) |
| LOC110520661 | LOC106573762 | coding | upstream | 122860 | 28903691 ~ 29067795 (+) |
| LOC110520598 | LOC106573760 | coding | upstream | 328463 | 28844734 ~ 28860495 (+) |
| LOC110520650 | LOC106573761 | coding | upstream | 344298 | 28842592 ~ 28844660 (+) |
| LOC110520570 | LOC106573757 | coding | upstream | 402202 | 28781897 ~ 28786756 (+) |
| mctp2a | LOC106573768 | coding | downstream | 5130 | 29321672 ~ 29361563 (+) |
| LOC110520750 | NA | coding | downstream | 149467 | 29466009 ~ 29490205 (+) |
| lysmd4 | LOC106573773 | coding | downstream | 746652 | 30063194 ~ 30083394 (+) |
| rgma | LOC106573775 | coding | downstream | 968086 | 30284628 ~ 30300184 (+) |
| fam174b | LOC106573778 | coding | downstream | 1043224 | 30359766 ~ 30366602 (+) |
| G29790 | NA | non-coding | upstream | 28077 | 29160649 ~ 29160881 (+) |
| G29770 | NA | non-coding | upstream | 40799 | 29147948 ~ 29148159 (+) |
| G29767 | NA | non-coding | upstream | 42789 | 29145953 ~ 29146169 (+) |
| G29752 | NA | non-coding | upstream | 53550 | 29135132 ~ 29135408 (+) |
| G29593 | NA | non-coding | upstream | 57278 | 29131456 ~ 29131680 (+) |
| G30041 | NA | non-coding | downstream | 52612 | 29369154 ~ 29369398 (+) |
| G30050 | NA | non-coding | downstream | 57755 | 29374297 ~ 29374597 (+) |
| G30072 | NA | non-coding | downstream | 72289 | 29388831 ~ 29389084 (+) |
| G30085 | NA | non-coding | downstream | 83281 | 29399823 ~ 29400028 (+) |
| G30086 | NA | non-coding | downstream | 83851 | 29400393 ~ 29400622 (+) |
| G28416 | carmil2 | other | upstream | 1140596 | 28047626 ~ 28048362 (+) |
| G28285 | LOC106573733 | other | upstream | 1334004 | 27853757 ~ 27854954 (+) |
| G28280 | NA | other | upstream | 1343947 | 27844640 ~ 27845011 (+) |
| LOC110520258 | LOC106560847 | other | upstream | 1623806 | 27560102 ~ 27565152 (+) |
| G33249 | NA | other | downstream | 2533931 | 31850473 ~ 31850969 (+) |
| G33284 | NA | other | downstream | 2639988 | 31956530 ~ 31961547 (+) |
| G33681 | LOC106573476 | other | downstream | 3134312 | 32450854 ~ 32452385 (+) |
| G33768 | NA | other | downstream | 3296531 | 32613073 ~ 32617684 (+) |
| sema3e | LOC106573450 | other | downstream | 4006225 | 33268524 ~ 33326523 (+) |
| G29877 | NA | non-coding | upstream | 7783 | 29305063 ~ 29305350 (+) |
| G29876 | NA | non-coding | upstream | 8641 | 29304256 ~ 29304492 (+) |
| G29873 | NA | non-coding | upstream | 10826 | 29301881 ~ 29302307 (+) |
| G29823 | NA | non-coding | upstream | 91063 | 29201852 ~ 29222070 (+) |
| mef2aa | mef2a | other | upstream | 59915 | 29188958 ~ 29316547 (+) |
