plin1 (plin1)


Basic Information

Item Value
gene id plin1
gene name plin1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 30517419 ~ 30549437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598341.2
TGGAACCACTTGGGAGATTCTGGATTTTGGGTAGACTTCTCCTTTAAGTGGGCGTGATGAGCAGGCTTTTTCCCCAGGTTGTGTCTGTATAGTTCTTCTGTTCCTCACCAAATTAAATGTGCCACGGTCTTCAGCGGGACTCAACACTAGACGGCCTAGTTGATAAGTCATAATGGCTCCAGAGAAAACAGCATCCACCAAAGCCCAGGAAAAGGACAATGTGTTTGTCAGACTCCTAAGCCTACCTGCAGTGAGCTCTACCTATGAGGTTATTGAGAGGACCTACACTAGCACCAAGCAGACCCACCCGCTCCTCTGctctgtgtgtggggtgtatGAGAGGGGGGCCAGGACTGCCAGCAGTCTGGCAGTGTGGAGCATCCAGCCTGCCATCGACCGACTGGAGACCCAGCTTGTTGCTGCCAACAATCTGGCCTGTAAAGGGCTGGATCATCTGGAGGAAAAGATCCCAGCTCTGCAGTATCCCCCTGAGAAGCTGGCGTCTGGCATAGTGgatgcagtcacatctacagtGCAGACAGCTAAGGAGGGCATCGCCAGCCCCATCGCTGGCACCTCAGACAGGGTGGTCAGCATGGCATCCAGTTGGCTCCAGTTGACCAGGAGTGCCTTCAGTGATGGCTTTAGCTACGTCCTGAACAGCAAGCCTGTCCACCTTGCAGGGGAGGGAGCAGACACTGCACTGACCCTGGCTGAGAGTCTGGTCAACTATGTTCTGCCTGGATCCTCTGAGGAGAATGAGTCTGCTGCTTTGTGGGAGCAGGAGTCAGGTGTCAGTGCTCCTGGCCTTCCGCCCAGCTACAGGAGGCTTGGGGCTCTGGCCAGCACAGTGTGTCGACGTGCCTACAATCAGACAACCGCAACGCTCCAACACGCCAAGAGTCAAGGTCAGGACCTGGTCACACACATCTCCGGTGTGTCTCCACTGACTGAATATGCCATGAAGAACCTTGAGGCTGTGGAAACAGTGGGCCTGTTCTTTCAGAGCTCATTGATGGGATTCTTCAGttgggaggagcagagagacaaAGCGACAGAAGCAGAGTTTCAGAAGGTTATGAACCCTTACATCATACCAGCCTTAGAGCAGAGTGGTGGTGGGCTGCAGCGCCTGGTGAGTGGCCTTGGTTATCAACTGCAGATTAACTACATGTCAGTTGTGTCCAGTGTGAAGAGTGCCCCTCAGACCACCTTTGGCTTGGCTAAGAACGGGCTGGGTGCCCTGTTGGAGACCGTGGGCAGCGCCCGGGATCGTGTGGTGAACAGCATCTCCTATTATGTTATGATTCCAGGGTTATACTCCTACAAGGATTCTGAGCCTGGCTGCAGTGCTGTGgatgaggagaacagtgagcccAAGATCTCTGATGAGGCCCGGCTCCTCAAGCAAAGGGTCATGCTGCAGATCCCCCAACAGCAGAGGATGATACTGGGCCAGTCCTACACCTCTACCGTCACCCAGCGCATCCCACGGAGAGGAGAGATCGCCATGAGGTCCCGAAACTCCTCGTATACACACAATGTGCATTCCCGCAGCTACAGCCCCACTGCTAAATACGTTGTCACTGTGGAGCCCATTCAGAAGGATACAACTGAAATGGATGACTAACAGTGTCAACTAGAAGCAATTTAATATAAGCTTGCAACAATGCTGTGATTCAACTATTGCAACAGTATTTGTAGAGCTTTATGCAGTAACAGCAAGTGCAATCATGTATGTCGAAGGTCTACGAATGTAATACTTGTGTGTTTCTTTGTGATATGGCCAAAGCTTTGCTTGAAAGAAGGCCTCCTATTCTGTTGACAAATGCATAGCTAATAGACAAAGCAATGTCTGAAACAATGATTTATATATGCAGTAGATGGCTATTAGGAGGGGGCGTGTTGAAGCCACCGCACCTCCATCTTGGCAAAGATATTTTGGAAGttatagaaatgtatttgttaATGTCGACATAAATGTCTGCCGCGTTCAGTCTATTTCAGACAGCTTAAAGCATACTTTAACAATATGTCAGCTGAACATTAAAATGGCAAAACGTTTTCCATAAAGTATAATTTTGAGATTACGAATCATATTGTCCCCACTACAACagaaaatacttaaatacatgtcattCTGTCCTTTAAACATTTCATTGAAGTAGATGTAGAATTCCattaattcctatggaggactgatGGCTTCAAAGCATCACAATGGcaaatacatagcatcagcaatccagggtttaaaTAAATGATTGGCCAGAAACAATGTAAATATGTCTGTGCTCAATAGCTTTGCCTATAACATAGCTGAATCATTAAGAACAGACAGATCAATGAAGTGACGCTGATCCTGTCCACATcgagctctgtctctctgtcattaGAGGGATTCATAAATTGGATTTGAGAAGAAACTCTAGGTACCATCTTTCCTTCTTACTGCCTGTCATGGGAAAATGTTGAACAAAAGACTGTCTTGAAGAAATAACCCACATTCTATCACGATGAGGGACATGCATGACGTTAAACCATTAAAAATATTCTTAAATGACA
>XM_021598342.2
TGGAACCACTTGGGAGATTCTGGATTTTGGGTAGACTTCTCCTTTAAGTGGGCGTGATGAGCAGGCTTTTTCCCCAGGTTGTGTCTGTATAGTTCTTCTGTTCCTCACCAAATTAAATGTGCCACGGTCTTCAGCGGGACTCAACACTAGACGGCCTAGTTGATAAGTCATAATGGCTCCAGAGAAAACAGCATCCACCAAAGCCCAGGAAAAGGACAATGTGTTTGTCAGACTCCTAAGCCTACCTGCAGTGAGCTCTACCTATGAGGTTATTGAGAGGACCTACACTAGCACCAAGCAGACCCACCCGCTCCTCTGctctgtgtgtggggtgtatGAGAGGGGGGCCAGGACTGCCAGCAGTCTGGCAGTGTGGAGCATCCAGCCTGCCATCGACCGACTGGAGACCCAGCTTGTTGCTGCCAACAATCTGGCCTGTAAAGGGCTGGATCATCTGGAGGAAAAGATCCCAGCTCTGCAGTATCCCCCTGAGAAGCTGGCGTCTGGCATAGTGgatgcagtcacatctacagtGCAGACAGCTAAGGAGGGCATCGCCAGCCCCATCGCTGGCACCTCAGACAGGGTGGTCAGCATGGCATCCAGTTGGCTCCAGTTGACCAGGAGTGCCTTCAGTGATGGCTTTAGCTACGTCCTGAACAGCAAGCCTGTCCACCTTGCAGGGGAGGGAGCAGACACTGCACTGACCCTGGCTGAGAGTCTGGTCAACTATGTTCTGCCTGGATCCTCTGAGGAGAATGAGTCTGCTGCTTTGTGGGAGCAGGAGTCAGGTGTCAGTGCTCCTGGCCTTCCGCCCAGCTACAGGAGGCTTGGGGCTCTGGCCAGCACAGTGTGTCGACGTGCCTACAATCAGACAACCGCAACGCTCCAACACGCCAAGAGTCAAGGTCAGGACCTGGTCACACACATCTCCGGTGTGTCTCCACTGACTGAATATGCCATGAAGAACCTTGAGGCTGTGGAAACAGTGGGCCTGTTCTTTCAGAGCTCATTGATGGGATTCTTCAGttgggaggagcagagagacaaAGCGACAGAAGCAGAGTTTCAGAAGAGTGGTGGTGGGCTGCAGCGCCTGGTGAGTGGCCTTGGTTATCAACTGCAGATTAACTACATGTCAGTTGTGTCCAGTGTGAAGAGTGCCCCTCAGACCACCTTTGGCTTGGCTAAGAACGGGCTGGGTGCCCTGTTGGAGACCGTGGGCAGCGCCCGGGATCGTGTGGTGAACAGCATCTCCTATTATGTTATGATTCCAGGGTTATACTCCTACAAGGATTCTGAGCCTGGCTGCAGTGCTGTGgatgaggagaacagtgagcccAAGATCTCTGATGAGGCCCGGCTCCTCAAGCAAAGGGTCATGCTGCAGATCCCCCAACAGCAGAGGATGATACTGGGCCAGTCCTACACCTCTACCGTCACCCAGCGCATCCCACGGAGAGGAGAGATCGCCATGAGGTCCCGAAACTCCTCGTATACACACAATGTGCATTCCCGCAGCTACAGCCCCACTGCTAAATACGTTGTCACTGTGGAGCCCATTCAGAAGGATACAACTGAAATGGATGACTAACAGTGTCAACTAGAAGCAATTTAATATAAGCTTGCAACAATGCTGTGATTCAACTATTGCAACAGTATTTGTAGAGCTTTATGCAGTAACAGCAAGTGCAATCATGTATGTCGAAGGTCTACGAATGTAATACTTGTGTGTTTCTTTGTGATATGGCCAAAGCTTTGCTTGAAAGAAGGCCTCCTATTCTGTTGACAAATGCATAGCTAATAGACAAAGCAATGTCTGAAACAATGATTTATATATGCAGTAGATGGCTATTAGGAGGGGGCGTGTTGAAGCCACCGCACCTCCATCTTGGCAAAGATATTTTGGAAGttatagaaatgtatttgttaATGTCGACATAAATGTCTGCCGCGTTCAGTCTATTTCAGACAGCTTAAAGCATACTTTAACAATATGTCAGCTGAACATTAAAATGGCAAAACGTTTTCCATAAAGTATAATTTTGAGATTACGAATCATATTGTCCCCACTACAACagaaaatacttaaatacatgtcattCTGTCCTTTAAACATTTCATTGAAGTAGATGTAGAATTCCattaattcctatggaggactgatGGCTTCAAAGCATCACAATGGcaaatacatagcatcagcaatccagggtttaaaTAAATGATTGGCCAGAAACAATGTAAATATGTCTGTGCTCAATAGCTTTGCCTATAACATAGCTGAATCATTAAGAACAGACAGATCAATGAAGTGACGCTGATCCTGTCCACATcgagctctgtctctctgtcattaGAGGGATTCATAAATTGGATTTGAGAAGAAACTCTAGGTACCATCTTTCCTTCTTACTGCCTGTCATGGGAAAATGTTGAACAAAAGACTGTCTTGAAGAAATAACCCACATTCTATCACGATGAGGGACATGCATGACGTTAAACCATTAAAAATATTCTTAAATGACA

Function

symbol description
plin1 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 4 and obesity. Orthologous to human PLIN1 (perilipin 1).

NR:

description
perilipin-1 isoform X2

GO: NA

KEGG:

id description
K08768 PLIN1; perilipin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598341.2 False 2565 mRNA 0.48 9 30517419 30549437
XM_021598342.2 True 2529 mRNA 0.48 9 30517419 30549437

Neighbor

gene id symbol gene type direction distance location
slco3a1 LOC106561149 coding downstream 56076 30414081 ~ 30461343 (-)
st8sia2 LOC100135855 coding downstream 116773 30373276 ~ 30400646 (-)
LOC110520865 NA coding downstream 164771 30346755 ~ 30352648 (-)
chd2 LOC106573776 coding downstream 181004 30303619 ~ 30336415 (-)
LOC118964375 NA coding downstream 233181 30278255 ~ 30284238 (-)
LOC110520931 LOC106573506 coding upstream 164401 30713838 ~ 30981725 (-)
LOC110520932 LOC106573529 coding upstream 581714 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 coding upstream 877961 31426123 ~ 31444964 (-)
LOC110521059 scaper coding upstream 911832 31461269 ~ 31549288 (-)
tspan3a tspan3 coding upstream 1016937 31566374 ~ 31582335 (-)
G31513 NA non-coding downstream 22225 30488272 ~ 30495194 (-)
G31474 NA non-coding downstream 106331 30410880 ~ 30411088 (-)
G31472 NA non-coding downstream 109119 30408094 ~ 30408300 (-)
G31374 NA non-coding downstream 112817 30403301 ~ 30404602 (-)
G31546 NA non-coding upstream 131 30549568 ~ 30549776 (-)
G31702 NA non-coding upstream 140691 30690128 ~ 30690404 (-)
G31721 NA non-coding upstream 153526 30702963 ~ 30703324 (-)
G31734 NA non-coding upstream 158869 30708306 ~ 30708528 (-)
G32161 NA non-coding upstream 417304 30966741 ~ 30967315 (-)
G29906 mef2a other downstream 1236719 29280276 ~ 29280700 (-)
G29355 NA other downstream 1813063 28703887 ~ 28704356 (-)
G28870 NA other downstream 2451114 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 2874299 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 5235401 25281604 ~ 25282018 (-)
G33386 NA other upstream 1435334 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 2557682 33107119 ~ 33108497 (-)
G35299 NA other upstream 2892931 33442368 ~ 33452413 (-)

Expression


Co-expression Network