LOC110520932 (LOC106573529)


Basic Information

Item Value
gene id LOC110520932
gene name LOC106573529
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31131151 ~ 31132900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598371.2
TGGTCTTAACAAGAGAGAGCCTTAGCCTGCTACTTATAGAGAGCCTCAGATATTGCTTATAAAAACTTTACTATTACAATAATTATCTATTATCTATCTCACAAGCCTGTCTGTACGGACACAGTGTTGGATTTGCTCACATCTCATTCACAAAAGTTTCCAAGCCCTGTCAGAGAACTAATGTGGGTGGTGGAGAAGATCCGTGTGTCCACGGAGAGACCCAACCTGCCTCTCCCCTCAACAGAATACAGCTTCAGGATCGGAGACATGTTTGGAGAGAAAGTTAACAAACACAAGAGACTTTCCCTGTGTCCTAACGTCATCACCCCAGACACTATACCAAAGTTCTGCATCCCTCCTAAGATCCCTCCCTTACAGGAGGCGAAAGGTAAAGAGCAGAGCCACCAGGCCCCCACCATCAGAGTGTCACTGTTTGAGCGGGAGAGGGGGATCCCTAAGAGGGAGGCCCCAGCACGAGAGCTCATCAACCCACACATCATCCAGGTGGAGAGTGTGGACGAGAGCCCCTATGACTGTAATGATGAGGAGACCACCAACGCAGACCCTCAGAGCCAGGCAGCCCTCTCCCTGCCCCACATGGCCAAAGCCCAGACCTGCTACGGCTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGGTCCTGTGGCACACCGCTGCTGCTCCCTAGGAGCAGGTCCAACACCGTCCTgtcatcctccccttcctccttcagTCTCCACACCCTGACCTCCAGACTGTCCCCCAGAGGTTATACCCTCAACAGACAGGGCACAGTGGACAGCGACACCACCTCGTCAGCTGAGTCATCACCTTTCAGCTCCCCAATGCTGAGCAGGTCCCCACCCAAGTCTTCCCTCTTCAAAACACTGAGTCAtgaaaggcttctctccagaaACATCAGAAAGACTGTGGTGTCCAGAAACAACTCCCTGTCGACAGACGAGGGCAGCTCCACGGACAATAGCCCCAACGTCATAAGGAGGGCGTCAGAGGGGCTGGTAGAGGGCCTTCCACCAAGCTTCGGTCTGGCTCCTCCTACCATCTTCCCCACAGACTTGGTTCTGCACAAGGAAAGGGTGATGAGGGAGAGCTTGATCCCAATAGGGAAGGATGGCCTCCTGCGTCTCTCTGCAGAATACTGTCCTGATAACCAGAGGCTGCGGGTGCGGCTCATCAGTGCTGAGGGGCTGTATACTCGTTCGGTGGACCCCAAGAGTATAAACTGCAGTTTCAGCCTCTCCCTGGTGCCTGGAAAGGTCCAAAAGCAGCGTAGCACAGTCATCAGGAAGTGTCATAACCCCATATTCAATGAGGACTTTTTCTTTGATGCCATCTCAGATCTCGGCCAACGCTCCCTGAGATTTAAAGTTGTCAATAAAATGTCCACTATGAAAAGAGACTATATTCTGGGGGATGTTGAACTTCCACTAACAAGCATTATCACTTTATAAGTTAAATTATTTGTATTCATTATTGacttgaaatgtatttatttatattttatttagtgAGTAGAGATTTTATTAAACCATT
>TU37184
CAAGAGAGAGCCTTAGCCTGCTACTTATAGAGAGCCTCAGATATTGCTTATAAAAACTTTACTATTACAATAATTATCTATTATCTATCTCACAAGCCTGTCTGTACGGACACAGTGTTGGATTTGCTCACATCTCATTCACAAAAGTTTCCAAGCCCTGTCAGAGAACTAATGTGGGTGGTGGAGAAGATCCGTGTGTCCACGGAGAGACCCAACCTGCCTCTCCCCTCAACAGAATACAGCTTCAGGATCGGAGACATGTTTGGAGAGAAAGTTAACAAACACAAGAGACTTTCCCTGTGTCCTAACGTCATCACCCCAGACACTATACCAAAGTTCTGCATCCCTCCTAAGATCCCTCCCTTACAGGAGGCGAAAGGTAAAGAGCAGAGCCACCAGGCCCCCACCATCAGAGTGTCACTGTTTGAGCGGGAGAGGGGGATCCCTAAGAGGGAGGCCCCAGCACGAGAGCTCATCAACCCACACATCATCCAGGTGGAGAGTGTGGACGAGAGCCCCTATGACTGTAATGATGAGGAGACCACCAACGCAGACCCTCAGAGCCAGGCAGCCCTCTCCCTGCCCCACATGGCCAAAGCCCAGACCTGCTACGGCTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGGTCCTGTGGCACACCGCTGCTGCTCCCTAGGAGCAGGTCCAACACCGTCCTgtcatcctccccttcctccttcagTCTCCACACCCTGACCTCCAGACTGTCCCCCAGAGGTTATACCCTCAACAGACAGGGCACAGTGGACAGCGACACCACC

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598371.2 False 1585 mRNA 0.50 2 31131151 31132900
TU37184 True 834 TUCP 0.40 2 31131893 31132891

Neighbor

gene id symbol gene type direction distance location
LOC110520931 LOC106573506 coding downstream 149426 30713838 ~ 30981725 (-)
plin1 plin1 coding downstream 581714 30517419 ~ 30549437 (-)
slco3a1 LOC106561149 coding downstream 669808 30414081 ~ 30461343 (-)
st8sia2 LOC100135855 coding downstream 730505 30373276 ~ 30400646 (-)
LOC110520865 NA coding downstream 778503 30346755 ~ 30352648 (-)
LOC110521048 LOC100194695 coding upstream 294498 31426123 ~ 31444964 (-)
LOC110521059 scaper coding upstream 328369 31461269 ~ 31549288 (-)
tspan3a tspan3 coding upstream 433474 31566374 ~ 31582335 (-)
LOC110521155 LOC106573493 coding upstream 468488 31601388 ~ 31609175 (-)
LOC110521169 LOC106573492 coding upstream 481276 31614176 ~ 31638698 (-)
G32298 NA non-coding downstream 43156 31087694 ~ 31087995 (-)
G32209 NA non-coding downstream 106009 31024799 ~ 31025142 (-)
G32188 NA non-coding downstream 120048 31010702 ~ 31011103 (-)
G32161 NA non-coding downstream 163836 30966741 ~ 30967315 (-)
G31734 NA non-coding downstream 422623 30708306 ~ 30708528 (-)
G32875 NA non-coding upstream 85204 31218104 ~ 31219774 (-)
G32952 NA non-coding upstream 211351 31344251 ~ 31344452 (-)
G33025 NA non-coding upstream 424966 31557866 ~ 31559782 (-)
G33021 NA non-coding upstream 429816 31562716 ~ 31563263 (-)
G29906 mef2a other downstream 1850451 29280276 ~ 29280700 (-)
G29355 NA other downstream 2426795 28703887 ~ 28704356 (-)
G28870 NA other downstream 3064846 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 3488031 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 5849133 25281604 ~ 25282018 (-)
G33386 NA other upstream 851871 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 1974219 33107119 ~ 33108497 (-)
G35299 NA other upstream 2309468 33442368 ~ 33452413 (-)
G35628 NA other upstream 2734658 33867558 ~ 33868045 (-)

Expression


Co-expression Network