LOC110521048 (LOC100194695)


Basic Information

Item Value
gene id LOC110521048
gene name LOC100194695
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31426123 ~ 31444964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521048
gtcaatccagaacattctACAGCTGTCAGAGTTCATTCAAGAGGTGAGCATCGAGGAGCAGAGTGAAAGATGCACAGAGCTATCAAGAAAACACATTTCAAACAGTTGtctggtctcccaGAGGTTTCAAAGCACCTTGGTGGTGGCAGAGCACAACAATGACAAGCTGACCCCCATTACGCTGAGTGCTATTACTGCAGCCAAGAAACTAGGAGGAGACGTGCCCTGTTTAGTTGCTGGAACAGACTGTGCAAAGGTTGCACAGGAAGTCAGCAAAGTCCTAGGTGTGAAGACAGTTCTGATTGCTCAAAATGATGCTTACAAAGGCTCTCTGCCAGAGGAATTGACTCCACTTATACTGGCAACCCAGAAGCAGTTCAACTTCACCCATATTTGTGCTGGAGCTTCTGCATTTGGGAAAAATCTCCCCCCCAGAGTGTCTGCCAAGTTGGATGTTGCTCCTATTTCAGACATTATTGAGATCAAAGCCCCTGACACCTTTGTCAGAACCATCTATGCCGGAAATGCTCTCAGCACTGTCAAGTGTAATGACAATGTCAAGGTTTTCACTGTCAGAGGGACATCCTTTGAGCCCACTGAGGTGGATGGAGGCAGTGCTACATCAGAGGAAGTTGCTGTGTCTGCTTCCGCTGGGATGTCTGAGTGGCTGGAAGCAACCTTGACCAATAGTGACTGTCCAGAGTTGACCAGGGCTAAGGTTGTGGTGTCCGGAGGAAGGGGACTGAAGAATGGCGAGAACTTCAAGCTGCTCTATGACCTTGCTGACAAAATTAATGCTGCAGTTGGTGCTTCCAGAGCTGCTGTGGATGCTAGATATGTCCCCAATGACATGCAGGTTGGACAGACTGGCAAGATCGTGGCCCCCGAGTTGTACATCGCTGTTGGCATCTCTGGAGCTATTCAACATCTGTCTGGGATGAAGACTATTGTTGCCATTAACAAGGACCCAGAGGCTCCCATCTTCCAGGTGGTTGACTAGGGTCTGATCTCTTTTAAGGCTGTGCCTGAGATGACTGCAGCATTGAACAAGTAAGCCAGCGTTCAGCTAAGCAGCCATCCCACCACTCTTACCTGGGTACCAAGACTGTAACCACGGATACAACTCTCCTACAACCTCTGCCTTAAATGGTTTCTGGAGCTACTATTTTGGGGACCCTAATAATGTTATCATCATTGTACCTAAATGGCAACAGAATAACACTCTCATTTTACAAACTGTCTGTTTTTATGTACGTAGGTAGGAAAATGCCACAAATAATGATCTGCTTATCTGGCGTAGGTGATATTTTTATCCCTATTAATGCATATTTTGTATTTAACGTAGCATCGCAAAGGTCATCTTCGGGAAGTCTAAACCTGCCTCCTCACTTAACTTTTTTTATACCAAAAGCTCTTGGTATAATGATGAAACTGACTGTAAATGACTGTTCTTTTACCATGTTTGCATTTGAATTGCTTTTACTCTGCAATGAATTCCCTTCATGATCAACTTACAAAATGCCTGTTGACATTAAAGTGCACAGGGTTAGTTTGCC
>TU37404
tctACAGCTGTCAGAGTTCATTCAAGAGGTGAGCATCGAGGAGCAGAGTGAAAGATGCACAGAGCTATCAAGAAAACACATTTCAAACAGTTGtctggtctcccaGAGGTTTCAAAGCACCTTGGTGGTGGCAGAGCACAACAATGACAAGCTGACCCCCATTACGCTGAGTGCTATTACTGCAGCCAAGAAACTAGGAGGAGACGTGCCCTGTTTAGTTGCTGGAACAGACTGTGCAAAGGTTGCACAGGAAGTCAGCAAAGTCCTAGGTGTGAAGACAGTTCTGATTGCTCAAAATGATGCTTACAAAGGCTCTCTGCCAGAGGAATTGACTCCACTTATACTGGCAACCCAGAAGCAGTTCAACTTCACCCATATTTGTGCTGGAGCTTCTGCATTTGGGAAAGAAATGCTCTCAGCACTGTCAAGTGTAATGACAATGTCAAGGTTTTCACTGTCAGAGGGACATCCTTTGAGCCCACTGAGGTGGATGGAGGCAGTGCTACATCAGAGGAAGTTGCTGTGTCTGCTTCCGCTGGGATGTCTGAGTGGCTGGAAGCAACCTTGACCAATAGTGACTGTCCAGAGTTGACCAGGGCTAAGGTTGTGGTGTCCGGAGGAAGGGGACTGAAGAATGGCGAGAACTTCAAGCTGCTCTATGACCTTGCTGACAAAATTAATGCTGCAGgTTTGAATTGATTTCCCCCACAGTTGGTGCTTCCAGAGCTGCTGTGGATGCTAGATATGTCCCCAATGACATGCAGGTTGGACAGACTGGCAAGATCGTGGCCCCCGAGTTGTACATCGCTGTTGGCATCTCTGGAGCTATTCAACATCTGTCTGGGATGAAGACTATTGTTGCCATTAACAAGGACCCAGAGGCTCCCATCTTCCAGGTGGTTGACTAGGGTCTGATCTCTTTTAAGGCTGTGCCTGAGATGACTGCAGCATTGAACAAGTAAGCCAGCGTTCAGCTAAGCAGCCATCCCACCACTCTTACCTGGGTACCAAGACTGTAACCACGGATACAACTCTCCTACAACCTCTGCCTTAAATGGTTTCTGGAGCTACTATTTTGGGGACCCTAATAATGTTATCATCATTGTACCTAAATGGCAACAGAATAACACTCTCATTTTACAAACTGTCTGTTTTTATGTACGTAGGTAGGAAAATGCCACAAATAATGATCTGCTTATCTGGCGTAGGTGATATTTTTATCCCTATTAATGCATATTTTGTATTTAACGTAGCATCGCAAAGGTCATCTTCGGGAAGTCTAAACCTGCCTCCTCACTTAACTTTTTTTATACCAAAAGCTCTTGGTATAATGATGAAACTGACTGTAAATGACTGTTCTTTTACCATGTTTGCATTTGAATTGCTTTTACTCTGCAATGAATTCCCTTCATGATCAACTTACAAAATGCCTGTTGACATTAAAGTGCACAGGGTTAGTTTGCCATATCGAAGGTTTATCCTATAATACGTTTTCTCCTGATAACACTTTGCACAGCTTCAATTACAAAACCCTCCAGATTTTGTAGCTGAAATGTTCCTCAAGTGTTCTGGTGTCTGGCTTATGATTTCACTGAGCTTTTTTTTGTcgtaatttgaaaacaaacattAGCATTGATAATGTAGAAAGACTAAGGTAAGAAATAAACTAGGAACACAACTCAACACATTTGAACAGATTAAATGTACACAGCAGCAGTCCGAACAGAGAGGACTGTACTTAATGTTGGGGTCTGGAGACATCAGGCTGACTTTTGAACTATGTTTGTTACATGTCTAAGGGTGATCGGTCTAGCGTCTCCAGTCCCTAATCAAGTATTTTAGACAAACCACCCAGTTCCACACCCACCCAGCCCCATCCCTAAATGATATCTAATGTACAGTGctttcaaaaagtattcataccacttgacttattccacattgtgttacatcctgaatttaaaatggattaaatataatttttttctctcacccatctacacacatggccagaaacaaagaacttctgaaactcgtcagaacaagaatagactgatgagtttcagaagaaaggtaatTGTTTTTGGCGTTttggagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaagaaggccagtttttctgtcaagttggttgttgatcattgctagacatccattttcaagtcttgccatagatcttcaagccgatttaagtcaaaacagtaACTAGGccgctcaggaacattcaatgttgtcttagtaagcaactccagtgtatatttggctttgttttaggttgttgtcctgctgaaaagtgaatttgtctcccaatgtctgattggaaagcagactgaaccaggttttcgtcTAGGATTTTTTCTGTGCTTAGCTCTTTTCTGTTCATATTTATCCTAAACTCCCTCATCCTTGCCGATGacagcatactcataacatgatgcagccaccaccatgcttgaaaatatgaatgaTGGTACTcgacgacgatgatgatgatatatttggcccaaacataatgctttgagttcaggacatgaagttaatttctttgccacattttttgcagttttactttagtgccttaacAGAATGCTTGTTTTAGAGTATTCTGTACATGCTTTCTTTTAACTCtgtcatttagattagtattgtggagtaactacaatgttgttaattgatcctcagttttctatcacag
>TU37405
tctACAGCTGTCAGAGTTCATTCAAGAGGTGAGCATCGAGGAGCAGAGTGAAAGATGCACAGAGCTATCAAGAAAACACATTTCAAACAGTTGtctggtctcccaGAGGTTTCAAAGCACCTTGGTGGTGGCAGAGCACAACAATGACAAGCTGACCCCCATTACGCTGAGTGCTATTACTGCAGCCAAGAAACTAGGAGGAGACGTGCCCTGTTTAGTTGCTGGAACAGACTGTGCAAAGGTTGCACAGGAAGTCAGCAAAGTCCTAGGTGTGAAGACAGTTCTGATTGCTCAAAATGATGCTTACAAAGGCTCTCTGCCAGAGGAATTGACTCCACTTATACTGGCAACCCAGAAGCAGTTCAACTTCACCCATATTTGTGCTGGAGCTTCTGCATTTGGGAAAAATCTCCCCCCCAGAGTGTCTGCCAAGTTGGATGTTGCTCCTATTTCAGACATTATTGAGATCAAAGCCCCTGACACCTTTGTCAGAACCATCTATGCCGGAAATGCTCTCAGCACTGTCAAGTGTAATGACAATGTCAAGGTTTTCACTGTCAGAGGGACATCCTTTGAGCCCACTGAGGTGGATGGAGGCAGTGCTACATCAGAGGAAGTTGCTGTGTCTGCTTCCGCTGGGATGTCTGAGTGGCTGGAAGCAACCTTGACCAATAGTGACTGTCCAGAGTTGACCAGGGCTAAGGTTGTGGTGTCCGGAGGAAGGGGACTGAAGAATGGCGAGAACTTCAAGCTGCTCTATGACCTTGCTGACAAAATTAATGCTGCAGgTTTGAATTGATTTCCCCCACAGTTGGTGCTTCCAGAGCTGCTGTGGATGCTAGATATGTCCCCAATGACATGCAGGTTGGACAGACTGGCAAGATCGTGGCCCCCGAGTTGTACATCGCTGTTGGCATCTCTGGAGCTATTCAACATCTGTCTGGGATGAAGACTATTGTTGCCATTAACAAGGACCCAGAGGCTCCCATCTTCCAGGTGGTTGACTAGGGTCTGATCTCTTTTAAGGCTGTGCCTGAGATGACTGCAGCATTGAACAAGTAAGCCAGCGTTCAGCTAAGCAGCCATCCCACCACTCTTACCTGGGTACCAAGACTGTAACCACGGATACAACTCTCCTACAACCTCTGCCTTAAATGGTTTCTGGAGCTACTATTTTGGGGACCCTAATAATGTTATCATCATTGTACCTAAATGGCAACAGAATAACACTCTCATTTTACAAACTGTCTGTTTTTATGTACGTAGGTAGGAAAATGCCACAAATAATGATCTGCTTATCTGGCGTAGGTGATATTTTTATCCCTATTAATGCATATTTTGTATTTAACGTAGCATCGCAAAGGTCATCTTCGGGAAGTCTAAACCTGCCTCCTCACTTAACTTTTTTTATACCAAAAGCTCTTGGTATAATGATGAAACTGACTGTAAATGACTGTTCTTTTACCATGTTTGCATTTGAATTGCTTTTACTCTGCAATGAATTCCCTTCATGATCAACTTACAAAATGCCTGTTGACATTAAAGTGCACAGGGTTAGTTTGCCATATCGAAGGTTTATCCTATAATACGTTTTCTCCTGATAACACTTTGCACAGCTTCAATTACAAAACCCTCCAGATTTTGTAGCTGAAATGTTCCTCAAGTGTTCTGGTGTCTGGCTTATGATTTCACTGAGCTTTTTTTTGTcgtaatttgaaaacaaacattAGCATTGATAATGTAGAAAGACTAAGGTAAGAAATAAACTAGGAACACAACTCAACACATTTGAACAGATTAAATGTACACAGCAGCAGTCCGAACAGAGAGGACTGTACTTAATGTTGGGGTCTGGAGACATCAGGCTGACTTTTGAACTATGTTTGTTACATGTCTAAGGGTGATCGGTCTAGCGTCTCCAGTCCCTAATCAAGTATTTTAGACAAACCACCCAGTTCCACACCCACCCAGCCCCATCCCTAAATGATATCTAATGTACAGTGctttcaaaaagtattcataccacttgacttattccacattgtgttacatcctgaatttaaaatggattaaatataatttttttctctcacccatctacacacatggccagaaacaaagaacttctgaaactcgtcagaacaagaatagactgatgagtttcagaagaaaggtaatTGTTTTTGGCGTTttggagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaagaaggccagtttttctgtcaagttggttgttgatcattgctagacatccattttcaagtcttgccatagatcttcaagccgatttaagtcaaaacagtaACTAGGccgctcaggaacattcaatgttgtcttagtaagcaactccagtgtatatttggctttgttttaggttgttgtcctgctgaaaagtgaatttgtctcccaatgtctgattggaaagcagactgaaccaggttttcgtcTAGGATTTTTTCTGTGCTTAGCTCTTTTCTGTTCATATTTATCCTAAACTCCCTCATCCTTGCCGATGacagcatactcataacatgatgcagccaccaccatgcttgaaaatatgaatgaTGGTACTcgacgacgatgatgatgatatatttggcccaaacataatgctttgagttcaggacatgaagttaatttctttgccacattttttgcagttttactttagtgccttaacAGAATGCTTGTTTTAGAGTATTCTGTACATGCTTTCTTTTAACTCtgtcatttagattagtattgtggagtaactacaatgttgttaattgatcctcagttttctatcacag

Function

NR:

description
PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial

GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521048 False 1556 mRNA 0.45 12 31427398 31444964
TU37404 False 2739 lncRNA 0.37 11 31426123 31444949
TU37405 True 2839 TUCP 0.42 12 31426123 31444949

Neighbor

gene id symbol gene type direction distance location
LOC110520932 LOC106573529 coding downstream 294498 31131151 ~ 31132900 (-)
LOC110520931 LOC106573506 coding downstream 445673 30713838 ~ 30981725 (-)
plin1 plin1 coding downstream 877961 30517419 ~ 30549437 (-)
slco3a1 LOC106561149 coding downstream 966055 30414081 ~ 30461343 (-)
st8sia2 LOC100135855 coding downstream 1026752 30373276 ~ 30400646 (-)
LOC110521059 scaper coding upstream 16305 31461269 ~ 31549288 (-)
tspan3a tspan3 coding upstream 121410 31566374 ~ 31582335 (-)
LOC110521155 LOC106573493 coding upstream 156424 31601388 ~ 31609175 (-)
LOC110521169 LOC106573492 coding upstream 169212 31614176 ~ 31638698 (-)
LOC110532195 NA coding upstream 346415 31791379 ~ 31794152 (-)
G32952 NA non-coding downstream 82946 31344251 ~ 31344452 (-)
G32875 NA non-coding downstream 207624 31218104 ~ 31219774 (-)
G32298 NA non-coding downstream 339403 31087694 ~ 31087995 (-)
G32209 NA non-coding downstream 402256 31024799 ~ 31025142 (-)
G32188 NA non-coding downstream 416295 31010702 ~ 31011103 (-)
G33025 NA non-coding upstream 112902 31557866 ~ 31559782 (-)
G33021 NA non-coding upstream 117752 31562716 ~ 31563263 (-)
G33023 NA non-coding upstream 133480 31578444 ~ 31600483 (-)
G33104 NA non-coding upstream 166978 31611942 ~ 31613064 (-)
G33109 NA non-coding upstream 172157 31617121 ~ 31682005 (-)
G29906 mef2a other downstream 2146698 29280276 ~ 29280700 (-)
G29355 NA other downstream 2723042 28703887 ~ 28704356 (-)
G28870 NA other downstream 3361093 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 3784278 27631001 ~ 27781768 (-)
G33386 NA other upstream 539807 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 1662155 33107119 ~ 33108497 (-)
G35299 NA other upstream 1997404 33442368 ~ 33452413 (-)
G35628 NA other upstream 2422594 33867558 ~ 33868045 (-)
G36141 NA other upstream 2832736 34277700 ~ 34362736 (-)

Expression


Co-expression Network