LOC110521239 (LOC106573487)


Basic Information

Item Value
gene id LOC110521239
gene name LOC106573487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31808912 ~ 31842003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598687.2
AAACACCTGAGAAATAAGCATGAAAAAAAAACAGCTCATGCAATGTCTTCACTTTACTTGTTTTTAATTCGTTGTCCAAGGTTCTGAAATGTGCTCTCCCAAGGACCCGTCACGTGACTTCCCTGCCTGCCTCGCTCAGCACCGAGCTCACTGGTTTCTGGAGATTTCACGTGAGAATACGACAAACCACGTCGCGCACACTGTAATTCTCTTCCTTTGCCAGTCTCGGTTTAAATTGACAGTCGGTctgtttcttttttctttttgtgGAGGAATGTGATAATCGAAGCCCTAACAAGCTCGTCAACGAATTTAGGATGATACATCCGTGTTCTTcgttttgtttctctcttttttcCTTCATGCCAACACGGTAAATGCAGGGGGTAGAGCGGACTGCTTGTCCGCAATCAGAAAGTCCACGTCTGTCTGGGGACCGAGTTTAAGAAGATGTAAGGATCAAGTAGCTTTTTTTCAACCAGAGTCTCTTTATCAAAATGCAGAAGGGAATACGATTTAATGATGGGCATGTCACGTACCTGGGTCTTTTGGCAAAGAAGGATGGTACGAGGCGAGGTTGCTTGAGCAAAAAGAGCTCAGACAACACTAAATGGCACACAAAGTGGTTCGCTTTATTACAAAATATGCTGTTTTATTTTGAGAGCGAGTCCAGCTCTCGACCCGCGGGATTATACCTGttggagggatgtgtgtgtgacagagcgcCGTCACCGAAACCCTCACAATCATCCAAGGAGTGTTTAGAAAAGCAGTACTACTTCACCGTAAATTTCACCCATGAAAACCAGAAAGCCCTGGAGTTGCGTACAGAGGATGTAAAGGACTGCGATGAATGGGTGGCTGCAATAACACATGCCAGTTACAGGAACCTGGCCACAGAGCATGAGACGCTCATGCAGAAGTATCTCCATCTACTCCAGATCGTGGAGACAGAGAAAACGGTTGCTAAGCAACTTCGACAACAGATAGAGGACGGGGAAATAGAGATTGAACGGCTAAAATCAGAGCTTTCCGGGCTGCACAAAGACAACGGGAAGATCCAGTCAAGTCCAACAGCCGAACCCAGCGAAGATGATGACTCTGAACTCAAGAAAATCAAAAAAGTGCAAAGTTTCCTGCGAGGCTGGATGTGCAGGAGGAAGTGGAAGACCATCATCCAGGACTACATCCGGTCTCCCCATGCAGAGAGCATGAGGAAGAGGAACCAGGTGGTGTTTAGCATGCTGGACTCTGAGGCTGAGTACGTCCAGCAGCTCCACATCCTGGTCAACAACTTCCTTCGACCCCTCCGTATGGCCgccagctccaagaaaccacccaTCACCCACGACGACGTCAGCAGCATCTTCCTCAACAGTGAGACCATCATGTTTCTGCATCAAATATTCTACCAAGGGTTGAAAGCAAGAATAGCAAGCTGGCCAACATTAGTTTTGGCGGACCTGTTTGATATTCTACTGCCCATGCTAAACATCTACCAGGAGTTTGTGAGGAACCACCAGTACAGTCTGCAGATTCTGGCCCACTGTAAGCAGAACCGAGACTTTGACAAGCTGCTGAAGCAGTATGAGGCCAAGCCCGACTGTGAGGAGAGGACTCTGGAGACCTTCCTCACCTACCCCATGTTCCAGATTCCCCGCTACATTCTTACACTCCATGAGCTCCTGGCCCACACACCACATGAGCATGTGGAGAGGACGAGTCTGGACTATGCCAAGTCAAAGCTGGAGGAGCTGTCCAGAATCATGCATGATGAGGTGAGCGAGACAGAGAACATCAGGAAGAACCTGGCCATTGAGCGCATGATCGTAGAAGGCTGCGAGATCCTCCTTGACACCAGCCAGACATTCGTCAGACAAGGCTCTCTCATCCAGGTGCCAATGAGTGAGAAGGGCAAGATCACCCGTGGGCGACTGGGCTCTCTGTCTCtgaagaaggagggggagaggcagtgctTCCTCTTCTCTAAGCATGTCATTATCTGCACCAGGGGCTCTGGAGGAAAACTGCACCTCACCAAGAATGGCGTGGTCTCTCTTATTGACTGCACTCTTCTGGAAGACCCCGAGGGGACAGATGATGAGTCCAAACCAGACAAGGGTGTACAGGACATGGAGCATCTGGACTTTAAGATCGTGGTGGAGCCTAAAGAAGGCCAGTCGTTTACAGTGATCCTGGTGGCCTCCTCGCGGCAGGAGAAATCTGCATGGACCAGTGACATCAGCCAGTGCATAGACAACATCCGCTGCAATGGGCTTATGATGAACGCATTTGAGGAGAACTCTAAAGTCACCGTGCCACAGATGATCAAGTCCGACGCCAGCCTGTACTGTGACGACGTGGACATCCGTTTCAGTAAGATGATGAACTCGTGTAAGGTGTTGCAGATCCGCTATGCCAGCGTGGAGAGACTCCTGGAGAGGCTGACAGACCTGCGCTTCCTCTCCATTGACTTTCTCAACACCTTCCTGCACTCCTACCGCGTGTTCACCAGCGCCAACGTGGTGCTGGACAAACTCATCACCATCTACAAGAAACCCATCAGTGCCATCCCAGCCCGATCCCTGGAGTTGTTCTTCGCCAGCAGTCAGAACAATAAACTCCTATATGGGGAGCCACCCAAATCCCCCAGGGCCAGCCGTAagttctcttccccccctcctctgGCCATCACCAAGACATCGTCCCCCAACCGCCGGCGTAAACTCTCCCTCAACATCCCCATCATCACTGGGGGAAAGGCTCTGGACCTGGCCGCCCTCAGCTGCTCCTCCAATGGCTATGCAAGCATGTACTCCTCCATGTCCCCCTTCAGCAAGACCACCCTGGACATCAACAAGTTATATGTCACCAGTCCCATCACCAGCAAGATCCCTGCTGAGGGAGAGGGCAAGACGGACAAGGCAGAGGAGACCACTGTGTCTAAACAAGATATTTCAGTTCCGGAGGAAAGTGACATTGACCAAAGCCAGAGCGATGATGCAGACCCAGAAACGTCTCCTATCAAGTCGCCAACCACTCCTCAAAAAAACGTGAAGTGCAAAAACTCCTCAGAATTCTCCCTGTTCTCATACAACAATGGCACAGTGATGTCTTCGTGTCGCCCTGAGATGGACAACAACAACCGCAGTGCCCTCTCTGCAGCCTCCGCCTTCGCCATCGCCACGGCAGGAGCCAATGAGGGCACGCCCACCAAGGAGAAGTATCGCCGCATGTCCCTGGCCAGCACAGGGTTCCAAACAGACCAGAGGAATGGGGACAAAGAGTTTGTCATCCGAAGGGCTGCAACCAACAGAGTCCTAAATGTTCTGAGGCACTGGGTGTCAAAACACTCTCAGGACTTTGAGAGTAACACTGAGCTGAAGCTGAAGGTCATAGCCTTCCTGGAGGAGGTGATGCATGACCCAGAGCTGCTGACCCAGGAGAGGAAAGCAGCCGCCAACATCATCAGGACCCTGACACAGGAGGACCCTGGTGACAATCAGATCAGCCTGGAGGAGGTTAAACAGCTGGCGTCAGTAGGGAAGGCAGAGGCATTTGAGAGCCATTCTGCCCTGGAGATAGCAGAGCAGCTCACCCTACTAGACCACCTGGTATTTAAGGTCATCCCATATGAAGAGTTCTTTGGTCAAGGCTGGATGAAGAATGACAAGACTGAAAGGACACCATATATCATGAAAACAACAAAGCACTTCAATGATATCAGTAACCTGATTGCCACGGAGATCCTGCGTTGTGACGATGTGACCACGCGGGTGGCGGTGATGGAGAAGTGGGTGGCGGTGGCGGACATCTGCCGCTGTCTCCATAACTACAACGCTGTGCTGGAGATCACCTCCTCCCTCAACCGCAGCTCTGTGTTCCGCCTCAAGAAGACCTGGCTCAAAGTGTCCAAGCAGACTAAAACCGTCATTGACAAGCTGCAGAAGTTGGTTTCGTCAGAGGGGAGGTTCAAAAATCTGAGGGAGGCTTTAAAGAACTGTGACCCTCCCTGTGTACCATACCTGGGGATGTACctcactgatctggctttcatTGAGGAGGGGACGCCCAACTACACTGAGGACAAATTAGTAAACTTCTCAAAGATGAGGATGATTTCACATATCATCAGAGAAATTAGACAATTCCAGCAAACAGCATACAAGATTGATCATCAGCCAAAGGCAGCACAGTATTTGCTGGACAACAGCTCTGTTCTGGATGAAGAAAGCCTGTATGAAGCCTCTCTCAGAATTGAGCCTAAAGTCAACAACTGAAGAGGATGACAGTTTCCCAAAGTGTACTCTCTGTTAAAGAACTATGTCGTACACAGTAGACATAAACAATAACTGGTGTTAAGTCATGTTTAACATGTTTGCTCTTTATACATGTGTTGTTTTGAGATGTTATCTTATGTACACATGTTCATTTAATTGTCACATTGTTGTTGAAATATTTAATTTTTCCTCTGCAACAAGGACCATTTCACTGGGCTTATTAGAGTGATAACTAAAGTCACAATGATCTTGCATAATGGTGTGTCCTTTGTAACCAATGAAATTGATTGACACCTTTTCATACTGTGGACTTTGCACTTCCTGTAAGCACACCTGCTGCCAGGGTCCTACTGTACAGGAAATATTGTTCTCTTTACTCAAATAGATATAATGTGTTTATCTGCAACTGATGTAGCATTGTAAAAATCTAACCAGGTAAAACGACATGGACATTTTTAAACCCAAAATTGATGCGGCTAAACCAATGTGTGTTCCTTTAATTGTTCTATATCAATCTGCCTCCTCCCTGCTTTGATTATTTGCTTCCATTTGAATTTCTATCAACATTTGAGTAATCTTGTCACAATTGAGATATGAGAGCCACTAGCACCACAGAGCTTTGTCTTGTCATCATGAGGAGTGATTCTTACATAATAAGATATTACACTTGCCTGATACAGGAAGTTCCTGACTTGCAGTACAGTACTGAATCTGCTCTGAAATGAATGAAGAACAGCAAATATATAAGGGCATATCCACACAACAAGCTTTTATCTAAGAACCAGCAAGGTCTGGTTTCTTTTGAAAACATTGAAGTCAAGTGTGAATACACCCTAACCTAAAACATGATTAACAATATTTGTAGCTTTATTTCATtactgttgcatgttgcattgtAACAGGCGGTTAAATCACAAACCTCTTACAGTATATTTGCAGAAGTAATTCAAGTCAAGTAGCCATAAATACAATTTTGTTTTGCAGAATAAACTCTATTAATCCATGCAATTGAAATGGCTGGTAATAAGCCAGTGTACGTTATATCTCCAATACGAGTGTACTTCCAGTTTGACAATGATTAGTTGGGGGTGACATCTTGTTTGACCAGGGGTTTGGGGAAGTTTGCTGCTATTCTTGGAGCATGCCATTGTAGCTGTTTCCCTTTTTAAAAGCACATGTGTGTTAGCTTTCAATTTAAACTTAACGGAGCACACATATTAAAGAAAAATAAAGCAACACCCTTGAAATTGTAGTATTTTCAGGCTTTGTGATATTTGTGTACAGTAAAAGGTTGTTCCGCTATTATACTGTATCATTCAAAGACGATCTATGTCCTTTTGCTGTTCCAGTGATTGTGGAACGTGACCGTATATCACTCTGTTaaatgcattgttgtttaagaGTATGATAAAAGTAAGTGAATGAGTTACTCCGCCTGCAGCATTCAAAAGGTATTTTTGTAGTATTAGTATAAGGCAAGGGGTTACAAGAACACAGGAAAGTATTTTGTACTTTGTTGTTGTTAATTCACCTTGCTGAAATGTATGCTGTACATTTTGTACATGCAGCCCTGCATATTTATTCATGTGGAACAGTGTCAAGTACACCTCTGAAAAGCATTGTATCCCAAGCGTCAACACAAAATGCTACAACAATTGTAATTTTGAAACCATGACTTAGAGGTAGAAgacaacttcaaagtgttttgcATATACTGTAATCCTGTCTATAATCATTCTCTTAGCAGGAATATAGTAATGTAGTGCTTATTCTGTGaatatttgtatgtatttttacCATGTACAGTCTAGAAACATTTAAAGCTCATATGGCAGGCATGCAACACTGTATCAGACaatattaaaacaatatatatacatatatatactgtatacacttaTACGTGCACATACTCTTATAAATGAAATATTAACAAACAAACGTTTTGCTGTTAGCAATACCCAGTGGTATGAGAATTATCTTTCAACCCTTATGTTTATTTCCACAGCTTGAGAAATATTTCCAGTTTTGTAAAAAGAAAAAATGTATGTTTCCTGATTACCTCTTGCTAATAAATCTATTCTATCTCAGGGGCA

Function

NR:

description
ras-specific guanine nucleotide-releasing factor 1-like isoform X1

GO: NA

KEGG:

id description
K04349 RASGRF1; Ras-specific guanine nucleotide-releasing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598687.2 True 6376 mRNA 0.45 27 31808912 31842003

Neighbor

gene id symbol gene type direction distance location
LOC110532195 NA coding downstream 14760 31791379 ~ 31794152 (-)
LOC110521169 LOC106573492 coding downstream 170214 31614176 ~ 31638698 (-)
LOC110521155 LOC106573493 coding downstream 199737 31601388 ~ 31609175 (-)
tspan3a tspan3 coding downstream 226577 31566374 ~ 31582335 (-)
LOC110521059 scaper coding downstream 259624 31461269 ~ 31549288 (-)
LOC110521251 LOC106573484 coding upstream 147297 31989300 ~ 31997662 (-)
LOC110521435 NA coding upstream 373500 32215495 ~ 32217278 (-)
LOC110521366 LOC106573474 coding upstream 376755 32218758 ~ 32270230 (-)
pex11a pex11a coding upstream 482932 32324935 ~ 32328199 (-)
LOC110521442 NA coding upstream 486707 32328710 ~ 32330586 (-)
G33212 NA non-coding downstream 26753 31777165 ~ 31782159 (-)
G33109 NA non-coding downstream 126907 31617121 ~ 31682005 (-)
G33104 NA non-coding downstream 195848 31611942 ~ 31613064 (-)
G33023 NA non-coding downstream 208429 31578444 ~ 31600483 (-)
G33021 NA non-coding downstream 245649 31562716 ~ 31563263 (-)
G33246 NA non-coding upstream 5688 31847691 ~ 31847899 (-)
G33252 NA non-coding upstream 9334 31851337 ~ 31851612 (-)
G33386 NA non-coding upstream 145356 31984771 ~ 31989249 (-)
G33437 NA non-coding upstream 164621 32006624 ~ 32006831 (-)
G33448 NA non-coding upstream 171624 32013627 ~ 32013835 (-)
LOC110521048 LOC100194695 other downstream 363963 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 676021 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 2528212 29280276 ~ 29280700 (-)
G29355 NA other downstream 3104556 28703887 ~ 28704356 (-)
G28870 NA other downstream 3742607 28057443 ~ 28066305 (-)
G35075 LOC106573452 other upstream 1265116 33107119 ~ 33108497 (-)
G35299 NA other upstream 1600365 33442368 ~ 33452413 (-)
G35628 NA other upstream 2025555 33867558 ~ 33868045 (-)
G36141 NA other upstream 2435697 34277700 ~ 34362736 (-)

Expression


Co-expression Network