LOC110521251 (LOC106573484)


Basic Information

Item Value
gene id LOC110521251
gene name LOC106573484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31989300 ~ 31997662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975695.1
CAGTAGGAGGAGGATGAGTCGTGGGACCGCCCCACTCTCCCACAGATATAAATAGGAGCCGGATTTTTTTTACTCCACTCAGTTCTCCTGAAGGATGAGATCCCTGAAACACCTCAAACATCACACCAGGAACAATGTGgaggaggagagtggccGTCTGGTGCGGTGCTACCCCAAGGTGGTGGAGGGCCAGGTGGAtgcaggaacacagacagaaccCGTGGTGGTGCTGTCACTGGCCCAGGCTGCTGTTCTGGGCCTTATCTCCCAGAATGAGATCTTTGGAGCCACCATCGCCCCCAATGGCTTCTACATGGGCGAGCCCAGGGAGAATGGCAGGACCCCTCCTACTCCAGAGGGCATGGAGTATGAGTACGCTGACCAGCTGATTGGGGCCAATGGGGACTACCTGGCTGAGCCTGTTGGGGAGTCGGAGCCCCACAGCAGTGAGAGGAGACGCCCCGGGCCCAGAGGGAGGACCAGGAGACCCAGGAGTGAAGGAGGAGCGCCAGGGGAGCCCCCTCACAGAGTCCCCAACACACAGACTCAGGtcaaaggggagaggggagagtctGACACCCCTCCGTCCTGCATCCACATGGCGAAGAGCCGTAGCAGCCCAGGCAAGACAGATGAGCCAGCCACTCACAGACGGCCTCTGAAGGAGGAGCAGAGCTGTGGtaactgtgttgtgtgtgtgagagagacgtcCAGTCAGACCCAGACAGAAGTACGGCCAGAGCAGgggccagaggagaggagggagggaggaggagagggacaagaAGAGGAGGTAGctgaggaggaagaaggagtGTTGAACCTCAAGACTGGAGGAGACAGGGGACACAGTCCCAGTCCCGTTATGAACCGCTACTTTGAGTCCAGCGAGGTGGCCTATGAGTCTGCTGACATGGCCGTGGGGGACTATGACGAGGGCAGCCAGGGAATGTTGTGGGCTGCAGACGCTGAGGGGATAGCCAGGCGCATGCAGATCGACCGGCTGGACGTCAACGTCCAGATAGATGAGTCCTACTGCGTGGATGTGGGAGAGGGCCTGAAGAGATGGAAGTGCCGCATGTGTGAGAAGTCTTATACCTCCAAGTACAACCTGGTCACCCACATCCTGGGCCACAACGGCATTAAGCCCCATGAGTGCTTGCACTGCGGCAAGCTGTTCAAGCAGCCCAGCCAcctccagacccacctgctcacccACCAGGGCACCCGGCCACACAAGTGCACCGTGTGTAAGAAGGCCTTCACCCAGACCAGCCACCTGAAGAGGCACATGCTGCAGCACTCGGACGTCAAGCCCTACAGCTGCCGCTTCTGTGGCCGAGGCTTCGCCTACCCCAGCGAGCTCCGGTCCCACGAAAACAAACACGAAAACGGCCACTGCCATGTGTGTTCCCAGTGTGCCATGGAGTTCCCCACCCACGCCTACCTGAAGCGCCACCAGACCAGTCACCAGGGCCCCACCACCTACCAGTGCACTGAGTGCAACAAGTCCTTTGCCTACCGCAGCCAGCTGCAGAACCACCTCATGAAGCACCAGAACGTAAGGCCCTACGTCTGCCCAGAGTGTGGAATGGAGTTTGTCCAGATCCATCATCTCAAGCAGCATTCCCTCACTCACAAGGTACTGACACCACAGGCCCTCGCCGACCAGAGTATGAAGGAATTCAAATGTGATGTGTGTGCCCGGGAGTTCACCCTCTCTGCTAACCTCAAGAGGCACATGCTGATCCACGCCAGCATCAGGCCCTTCCAGTGTCACGTCTGCTTCAAGACCTTTGTCCAGAAACAGACCCTCAAAACACACATGATCGTCCACCTGCCTGTCAAGCCTTTCAAATGCAAGGTGTGTGGCAAATCTTTCAACAGAATGTACAACCTCCTGGGTCACATGCACCTCCACGCTGGCAGCAAGCCCTTCAAGTGTCCTTACTGCTCCAGCAAGTTCAACCTGAAGGGCAATCTGAGCCGACACATGAAGGTCAAACACGGCATCCTGGACGCTTCACCAGACGGACAAGCCCCCCCTGACATAGAGAACCAGGAGGACTATGATGAAGACAACTTTGAATTCAGCGAACGAGAGAACCTGGCcagtaacaacacaccagacatcGCTAAACTATCTGAAATTGAGTATTATAGCAGCTACGCCAAGGGTGCAGGGCGCTACAAAACTGCATGAATGATTAAAAGACCCCATATTGAGTAGAAATGTAAACTAATAAAGGAAGTTAGTGCCACTAGCAGCTGACAGCAATGTGATGAGCTTTTACTCACTGTAAGGACATGATATAAAGTGGTGGAGTCTGCCCATTTGTATACACTGGAATCTGTTCTCTCGCTCCGGCATTCATTGGGAGTGAGAGACGGGTAATTTGGGATTGTACATTTCTCATCGGTCTGTTTGTTTTGTGCTGAAATGTGACTTCAGCTCTAGCTGCCACAACATTGTGATTGATAAATGTAGTGTTCACAGGAAAAAGGGGTCATATCTGAAAATAAACCATCATCTAAACCTCTGGGAGAGACATACTCAACATACATCCCCAGAGGTGGCCTAACTCTGTAAGCACACTTTGTAGGGAAACACCCATACGGTACCGACGTGGCTCAGTTGGTTGCGTACGGTACTTGCAACACCAGGATTGTGGGATCAATTTCCACGGCGGACCAGTACGAAAATGTaatcactcactactgtaagtcgctcactactgtaaatcgctcactactgtaaatcgctctggacaagcgtgtctgctaaatgactaaaatgtaatagTAAAATGCACTTACTCGTTCAGAGCCATCCCCCAGTAAGTGTGTGTGGGTAAATTAGAATACAGCTGAGTATTATTGCTTTTATTAACATATATAACAATGCATACAAGCCAGTCAAGTAAATGTGTCCTCTGTTCACGTCACTTACCAAAGCTGATAACATTCAAGCAGTTCTCATGATGGTTAGCCAAccaacttttatttttatttacttcTCTGTTTTACTTTTATACTGTGAGTAGTTTCAACTACAGTTCTAGGTTTAGATAACATAGGATGCTCATTTCATATTCTGTTGTATTTGAAATGTGCAGAAAGAATCATTCGGCCAGTGTCATTCAGACTCCTCGAGTTGGCTGGTTCTGCACATCATCACTTTATGGCCCCATGTTACTAGCTTGATTTGAAGTGTCTGCATTGGCAGACATTTTTGTTATTGATCCCGAGTTAAATAATTGTACTGATGCAGCCCACATCTTTAAGTGAGCTAAAAGCAAAATAAAGTATGTTCGAATTGCTCTTCTGATGTAGCCACCATGTGCCAAAGAATCTGACCAATGTTGGGCCACATTGCCAAAGCCTACAGCTGAGGACAATAGCAGTCTAGTGGCACCCACTCTCTGCTTTGTAGAGCTGGACATTCGATTTCACGTCCCCCAATAGCAGACTTCATGCAATTACTTTTTAGGCTTCATGCTCCTCCCAGTAGATTTTTTCCAAACGATTACCACTGAGAAGACACTAGTGCAGTTTTTTTAGGATCCTTCACAATTCATGCCCCATGCAAGCCTTCATGGAACAGACTGCAACATTTCTCAAACGCAAACACAGCCCCTGCATACTCATTGTGGTTTTGATGGGTGAATCGCAACAGGATCTGTCCTAAAAAACTTTAGACAGAAATAAAGTGCCCTTGTGTCTCCAGGACTGTGCCATCCATCATGCTACACACTGGTCTAAAGTGATGAACGACAACCTCCCAACATGTGACAGGGCCACAGACCGAGCAGAAAATGACTTGGGAAATTCCCTATATATTGTTTCCCCCTGTGCTTTGCTTTAAAACCACCTGCAAACTAGGTATATATGCAAGGTTAATTTTGAATTGTACACATTTGCAGCTAAAAGCTGAATACATAGGCCTACGTAAATTAAGAGATGTAGTATACAACATTGCAGTTATGCAGACTCAAAGTAAGGCATAGGGCTGTTGTAGTACCTGCCAGTCTGAGTAGAGGGAAGGTTCAGTGTGTGACTGTATCGGGTAGATTTGCCAGACATGGCCTCTTGTCTGAAGCAGCCATTTGTTGTAACACCATTATGGTATCCATACACAATGTTGATATAGTGTGCTTAATATACAAAATGCTCATTTTTGTGGGGGATAACAAACACCTCTAGTGATGAaacaaatggagaaaaaaaaaacaagatctGGAACTTGAATGGCTTTCTGTGTTAAACATTGGTGTGGAAATATGCTGTTGATAGAAATTTTAAAATGTGTACCAGACAATACTGTAAAATAATAAATTTATTTTAAAACTTTAAAAA
>XM_036975701.1
CAGTAGGAGGAGGATGAGTCGTGGGACCGCCCCACTCTCCCACAGATATAAATAGGAGCCGGATTTTTTTTACTCCACTCAGTTCTCCTGAAGGATGAGATCCCTGAAACACCTCAAACATCACACCAGGAACAATGTGgaggaggagagtggccGTCTGGTGCGGTGCTACCCCAAGGTGGTGGAGGGCCAGGTGGAtgcaggaacacagacagaaccCGTGGTGGTGCTGTCACTGGCCCAGGCTGCTGTTCTGGGCCTTATCTCCCAGAATGAGATCTTTGGAGCCACCATCGCCCCCAATGGCTTCTACATGGGCGAGCCCAGGGAGAATGGCAGGACCCCTCCTACTCCAGAGGGCATGGAGTATGAGTACGCTGACCAGCTGATTGGGGCCAATGGGGACTACCTGGCTGAGCCTGTTGGGGAGTCGGAGCCCCACAGCAGTGAGAGGAGACGCCCCGGGCCCAGAGGGAGGACCAGGAGACCCAGGAGTGAAGGAGGAGCGCCAGGGGAGCCCCCTCACAGAGTCCCCAACACACAGACTCAGGtcaaaggggagaggggagagtctGACACCCCTCCGTCCTGCATCCACATGGCGAAGAGCCGTAGCAGCCCAGGCAAGACAGATGAGCCAGCCACTCACAGACGGCCTCTGAAGGAGGAGCAGAGCTGTGGtaactgtgttgtgtgtgtgagagagacgtcCAGTCAGACCCAGACAGAAGTACGGCCAGAGCAGgggccagaggagaggagggagggaggaggagagggacaagaAGAGGAGGTAGctgaggaggaagaaggagtGTTGAACCTCAAGACTGGAGGAGACAGGGGACACAGTCCCAGTCCCGTTATGAACCGCTACTTTGAGTCCAGCGAGGTGGCCTATGAGTCTGCTGACATGGCCGTGGGGGACTATGACGAGGGCAGCCAGGGAATGTTGTGGGCTGCAGACGCTGAGGGGATAGCCAGGCGCATGCAGATCGACCGGCTGGACGTCAACGTCCAGATAGATGAGTCCTACTGCGTGGATGTGGGAGAGGGCCTGAAGAGATGGAAGTGCCGCATGTGTGAGAAGTCTTATACCTCCAAGTACAACCTGGTCACCCACATCCTGGGCCACAACGGCATTAAGCCCCATGAGTGCTTGCACTGCGGCAAGCTGTTCAAGCAGCCCAGCCAcctccagacccacctgctcacccACCAGGGCACCCGGCCACACAAGTGCACCGTGTGTAAGAAGGCCTTCACCCAGACCAGCCACCTGAAGAGGCACATGCTGCAGCACTCGGACGTCAAGCCCTACAGCTGCCGCTTCTGTGGCCGAGGCTTCGCCTACCCCAGCGAGCTCCGGTCCCACGAAAACAAACACGAAAACGGCCACTGCCATGTGTGTTCCCAGTGTGCCATGGAGTTCCCCACCCACGCCTACCTGAAGCGCCACCAGACCAGTCACCAGGGCCCCACCACCTACCAGTGCACTGAGTGCAACAAGTCCTTTGCCTACCGCAGCCAGCTGCAGAACCACCTCATGAAGCACCAGAACGTAAGGCCCTACGTCTGCCCAGAGTGTGGAATGGAGTTTGTCCAGATCCATCATCTCAAGCAGCATTCCCTCACTCACAAGAGTATGAAGGAATTCAAATGTGATGTGTGTGCCCGGGAGTTCACCCTCTCTGCTAACCTCAAGAGGCACATGCTGATCCACGCCAGCATCAGGCCCTTCCAGTGTCACGTCTGCTTCAAGACCTTTGTCCAGAAACAGACCCTCAAAACACACATGATCGTCCACCTGCCTGTCAAGCCTTTCAAATGCAAGGTGTGTGGCAAATCTTTCAACAGAATGTACAACCTCCTGGGTCACATGCACCTCCACGCTGGCAGCAAGCCCTTCAAGTGTCCTTACTGCTCCAGCAAGTTCAACCTGAAGGGCAATCTGAGCCGACACATGAAGGTCAAACACGGCATCCTGGACGCTTCACCAGACGGACAAGCCCCCCCTGACATAGAGAACCAGGAGGACTATGATGAAGACAACTTTGAATTCAGCGAACGAGAGAACCTGGCcagtaacaacacaccagacatcGCTAAACTATCTGAAATTGAGTATTATAGCAGCTACGCCAAGGGTGCAGGGCGCTACAAAACTGCATGAATGATTAAAAGACCCCATATTGAGTAGAAATGTAAACTAATAAAGGAAGTTAGTGCCACTAGCAGCTGACAGCAATGTGATGAGCTTTTACTCACTGTAAGGACATGATATAAAGTGGTGGAGTCTGCCCATTTGTATACACTGGAATCTGTTCTCTCGCTCCGGCATTCATTGGGAGTGAGAGACGGGTAATTTGGGATTGTACATTTCTCATCGGTCTGTTTGTTTTGTGCTGAAATGTGACTTCAGCTCTAGCTGCCACAACATTGTGATTGATAAATGTAGTGTTCACAGGAAAAAGGGGTCATATCTGAAAATAAACCATCATCTAAACCTCTGGGAGAGACATACTCAACATACATCCCCAGAGGTGGCCTAACTCTGTAAGCACACTTTGTAGGGAAACACCCATACGGTACCGACGTGGCTCAGTTGGTTGCGTACGGTACTTGCAACACCAGGATTGTGGGATCAATTTCCACGGCGGACCAGTACGAAAATGTaatcactcactactgtaagtcgctcactactgtaaatcgctcactactgtaaatcgctctggacaagcgtgtctgctaaatgactaaaatgtaatagTAAAATGCACTTACTCGTTCAGAGCCATCCCCCAGTAAGTGTGTGTGGGTAAATTAGAATACAGCTGAGTATTATTGCTTTTATTAACATATATAACAATGCATACAAGCCAGTCAAGTAAATGTGTCCTCTGTTCACGTCACTTACCAAAGCTGATAACATTCAAGCAGTTCTCATGATGGTTAGCCAAccaacttttatttttatttacttcTCTGTTTTACTTTTATACTGTGAGTAGTTTCAACTACAGTTCTAGGTTTAGATAACATAGGATGCTCATTTCATATTCTGTTGTATTTGAAATGTGCAGAAAGAATCATTCGGCCAGTGTCATTCAGACTCCTCGAGTTGGCTGGTTCTGCACATCATCACTTTATGGCCCCATGTTACTAGCTTGATTTGAAGTGTCTGCATTGGCAGACATTTTTGTTATTGATCCCGAGTTAAATAATTGTACTGATGCAGCCCACATCTTTAAGTGAGCTAAAAGCAAAATAAAGTATGTTCGAATTGCTCTTCTGATGTAGCCACCATGTGCCAAAGAATCTGACCAATGTTGGGCCACATTGCCAAAGCCTACAGCTGAGGACAATAGCAGTCTAGTGGCACCCACTCTCTGCTTTGTAGAGCTGGACATTCGATTTCACGTCCCCCAATAGCAGACTTCATGCAATTACTTTTTAGGCTTCATGCTCCTCCCAGTAGATTTTTTCCAAACGATTACCACTGAGAAGACACTAGTGCAGTTTTTTTAGGATCCTTCACAATTCATGCCCCATGCAAGCCTTCATGGAACAGACTGCAACATTTCTCAAACGCAAACACAGCCCCTGCATACTCATTGTGGTTTTGATGGGTGAATCGCAACAGGATCTGTCCTAAAAAACTTTAGACAGAAATAAAGTGCCCTTGTGTCTCCAGGACTGTGCCATCCATCATGCTACACACTGGTCTAAAGTGATGAACGACAACCTCCCAACATGTGACAGGGCCACAGACCGAGCAGAAAATGACTTGGGAAATTCCCTATATATTGTTTCCCCCTGTGCTTTGCTTTAAAACCACCTGCAAACTAGGTATATATGCAAGGTTAATTTTGAATTGTACACATTTGCAGCTAAAAGCTGAATACATAGGCCTACGTAAATTAAGAGATGTAGTATACAACATTGCAGTTATGCAGACTCAAAGTAAGGCATAGGGCTGTTGTAGTACCTGCCAGTCTGAGTAGAGGGAAGGTTCAGTGTGTGACTGTATCGGGTAGATTTGCCAGACATGGCCTCTTGTCTGAAGCAGCCATTTGTTGTAACACCATTATGGTATCCATACACAATGTTGATATAGTGTGCTTAATATACAAAATGCTCATTTTTGTGGGGGATAACAAACACCTCTAGTGATGAaacaaatggagaaaaaaaaaacaagatctGGAACTTGAATGGCTTTCTGTGTTAAACATTGGTGTGGAAATATGCTGTTGATAGAAATTTTAAAATGTGTACCAGACAATACTGTAAAATAATAAATTTATTTTAAAACTTTAAAAA

Function

NR:

description
PREDICTED: zinc finger protein 710-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975695.1 False 4356 mRNA 0.49 5 31989300 31997662
XM_036975701.1 True 4326 mRNA 0.49 5 31989300 31997662

Neighbor

gene id symbol gene type direction distance location
LOC110521239 LOC106573487 coding downstream 147297 31808912 ~ 31842003 (-)
LOC110532195 NA coding downstream 195148 31791379 ~ 31794152 (-)
LOC110521169 LOC106573492 coding downstream 350602 31614176 ~ 31638698 (-)
LOC110521155 LOC106573493 coding downstream 380125 31601388 ~ 31609175 (-)
tspan3a tspan3 coding downstream 406965 31566374 ~ 31582335 (-)
LOC110521435 NA coding upstream 217841 32215495 ~ 32217278 (-)
LOC110521366 LOC106573474 coding upstream 221096 32218758 ~ 32270230 (-)
pex11a pex11a coding upstream 327273 32324935 ~ 32328199 (-)
LOC110521442 NA coding upstream 331048 32328710 ~ 32330586 (-)
LOC118964447 NA coding upstream 334297 32331943 ~ 32333416 (-)
G33386 NA non-coding downstream 51 31984771 ~ 31989249 (-)
G33252 NA non-coding downstream 137688 31851337 ~ 31851612 (-)
G33246 NA non-coding downstream 141401 31847691 ~ 31847899 (-)
G33212 NA non-coding downstream 207141 31777165 ~ 31782159 (-)
G33109 NA non-coding downstream 307295 31617121 ~ 31682005 (-)
G33437 NA non-coding upstream 8962 32006624 ~ 32006831 (-)
G33448 NA non-coding upstream 15965 32013627 ~ 32013835 (-)
G34092 NA non-coding upstream 205109 32202771 ~ 32203302 (-)
G34093 NA non-coding upstream 206866 32204528 ~ 32205041 (-)
G34094 NA non-coding upstream 210332 32207994 ~ 32209099 (-)
LOC110521048 LOC100194695 other downstream 544351 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 856409 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 2708600 29280276 ~ 29280700 (-)
G29355 NA other downstream 3284944 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 1109457 33107119 ~ 33108497 (-)
G35299 NA other upstream 1444706 33442368 ~ 33452413 (-)
G35628 NA other upstream 1869896 33867558 ~ 33868045 (-)
G36141 NA other upstream 2280038 34277700 ~ 34362736 (-)
G36196 NA other upstream 2343900 34341562 ~ 34381232 (-)

Expression


Co-expression Network