LOC110521435


Basic Information

Item Value
gene id LOC110521435
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32215495 ~ 32217278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598981.2
aactgggaactcggaaaaaacgaGCTTCAActggaaaaaatatatttgaacgGTCTTCCAATTCgcgaactcgggcctctttctagagctcctactttctgacctgaagatcactaacgTCATCATTTGTTCCTGtattttccgagttcccagttgtttttaaTGCGGCATAAAGTACTGACATTATGCAGACGTCAACTACAAGAATACCGCTACTCTCGCGATGTCTCGTATTAACGCGTTCAGTCGCAGTAAAGTAAATCGAATATTGTCGGTGCACAGCTGGCAGGCTTGGCAGCCTTCTCCAGACCGTTTACctagaaacaacaacatgacaaGGGGGAATCAGCGTGACCTTGCTCGTGCTAGAAATGCCAAAAAACAAGGGAATGACAAGGGAAAGAAGGCTGATGATGGCATGTCTGCAGCTGCGAGGAAGCTGAGGGATGCAGAGATAATGCAACAGAAGCAGAAAAAAGCCAATGACCCTAAGCCGGCCGACGAGAAAGCCAAATAGCAGGATACAGAGCCCAATCACAACTATTCTCAGATACCCAGATGTTACCCATTATTGAAAGATGACCAGGTCTTGCTTTTGTCCCATAATCTGGGGTTTAGAACCAGTTTGTAATAttttgtggtggtggtacagtatagtTTGGGAAATGAATAAGGACTAATGCGTATGCCTATTTCAATACACAGGTCGAATGTTAATCAGTATTTACAATGTAAAGAGCAGGAATTTCAAACTCCACTACTTGGAATTACAAAAAAgcttgtatttttgtatttcctCATCTAGATTGTTACACAACTAGTGGTTTATGGTTTCTATACCATGTTTATTGCTTTTATATTGAGGATGAACATATGCAGTGCTGTAAGATTAATCAAATAAACTAATGAAAGATTCAATATGGGGAACTTTAATCTAACAAATTATACCACACACCTCTGTACAGAAAGTTTATTcaattaaaacaaataaaatcAGCTGACATAAA
>TU38568
GCGTTCAGTCGCAGTAAAGTAAATCGAATATTGTCGGTGCACAGCTGGCAGGCTTGGCAGCCTTCTCCAGACCGTTTACctagaaacaacaacatgacaaGGGGGAATCAGCGTGACCTTGCTCGTGCTAGAAATGCCAAAAAACAAGGGAATGACAAGGGAAAGAAGGCTGATGATGGCATGTCTGCAGCTGCGAGGAAGCTGAGGGATGCAGAGATAATGCAACAGAAGCAGAAAAAAGCCAATGACCCTAAGCCGGCCGACGAGAAAGCCAAATAGCAGGATACAGAGCCCAATCACAACTATTCTCAGATACCCAGATGTTACCCATTATTGAAAGATGACCAGGTCTTGCTTTTGTCCCATAATCTGGGGTTTAGAACCAGTTTGTAATAttttgtggtggtggtacagtatagtTTGGGAAATGAATAAGGACTAATGCGTATGCCTATTTCAATACACAGGTCGAATGTTAATCAGTATTTACAATGTAAAGAGCAGGAATTTCAAACTCCACTACTTGGAATTACAAAAAAgcttgtatttttgtatttcctCATCTAGATTGTTACACAACTAGTGGTTTATGGTTTCTATACCATGTTTATTGCTTTTATATTGAGGATGAACATATGCAGTGCTGTAAGATTAATCAAATAAACTAATGAAAGATTCAATATGGGGAACTTTAATCTAACAAATTATACCACACACCTCTGTACAGAAAGTTTATTcaattaaaacaaataaaatcAGCTGACATAAATACTGAAA

Function

NR:

description
small EDRK-rich factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598981.2 False 1007 mRNA 0.40 3 32215503 32217278
TU38568 True 777 lncRNA 0.39 3 32215495 32217040

Neighbor

gene id symbol gene type direction distance location
LOC110521251 LOC106573484 coding downstream 217841 31989300 ~ 31997662 (-)
LOC110521239 LOC106573487 coding downstream 373500 31808912 ~ 31842003 (-)
LOC110532195 NA coding downstream 421351 31791379 ~ 31794152 (-)
LOC110521169 LOC106573492 coding downstream 576805 31614176 ~ 31638698 (-)
LOC110521155 LOC106573493 coding downstream 606328 31601388 ~ 31609175 (-)
LOC110521366 LOC106573474 coding upstream 1480 32218758 ~ 32270230 (-)
pex11a pex11a coding upstream 107657 32324935 ~ 32328199 (-)
LOC110521442 NA coding upstream 111432 32328710 ~ 32330586 (-)
LOC118964447 NA coding upstream 114681 32331943 ~ 32333416 (-)
LOC110521431 LOC106561184 coding upstream 125571 32342849 ~ 32351133 (-)
G34098 NA non-coding downstream 473 32214752 ~ 32215030 (-)
G34095 NA non-coding downstream 6080 32209211 ~ 32209423 (-)
G34094 NA non-coding downstream 6404 32207994 ~ 32209099 (-)
G34093 NA non-coding downstream 10462 32204528 ~ 32205041 (-)
G34092 NA non-coding downstream 12201 32202771 ~ 32203302 (-)
G34135 NA non-coding upstream 54774 32272052 ~ 32272266 (-)
G34136 NA non-coding upstream 56137 32273415 ~ 32273615 (-)
G34139 NA non-coding upstream 59168 32276446 ~ 32276676 (-)
G33386 NA other downstream 229353 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 770554 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1082612 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 2934803 29280276 ~ 29280700 (-)
G29355 NA other downstream 3511147 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 889841 33107119 ~ 33108497 (-)
G35299 NA other upstream 1225090 33442368 ~ 33452413 (-)
G35628 NA other upstream 1650280 33867558 ~ 33868045 (-)
G36141 NA other upstream 2060422 34277700 ~ 34362736 (-)
G36196 NA other upstream 2124284 34341562 ~ 34381232 (-)

Expression


Co-expression Network