LOC110521442


Basic Information

Item Value
gene id LOC110521442
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32328710 ~ 32330586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473145.2
TGTTTCCAGAAAAGTCGGTCTGAGTTTCATTTCACAGGGGAGGTGGAGACTCAGGTTTTGTTGCTACCCTGCAGTATAAAATCCACACACGGCTCGCTCTCCTCAGTCCTGCAGTCCCCTGCTGAACGCCATTATGACGACCACAGATGAGCAGGatgaagaggaagatgaagatTACAAGTATAATTACTTTTTATAGTGTACAGTCAGTCTACTGCCAAGGGTAGCGCACCGGGTTCCTTTGTGGAACCGGTGGGCAGAAGTCCATCTGAGGCACTGAAACAGGCCTTAAAACTAGGAGGAGGAACTCCTTCCAGATGAGGAAGGACTTAACCTCGAACAAAACAGACTATCACTATGCTATGTGAAGGTACTTGAAGGAATTTCTGAGTGGCTCAGAACATTTCAGGGTTGCTGCTTTGGCTAATGGTTAGGATTGCATAATTTACTATATGAGGATATTATGGTTGTAGATATCTTTTcaataatgtaagatatgtagatGCATCTAACCTCCAAACCCAGGATCTCTCCTGAAATGAAGCCACAAGTCTAAACTCCCATCTTCTGCTGTGTCATGCAAAAACTGCATCACAAACCACTGAAAGGCATAAAAGAGAGCCACTAGGAGACAGGAGGGCAGAGTTCCACCTGAGGTACTGAAGATAAGACAAGATGTCTACCAGGCCTTAAAGGGAGAAGCGGCGCCTaccagatgaggaaggaggactTAAGCCTTGAAACCATGAAGCGAGAAGACTCTCACAATATGAAGGCACTTTATTATGTTAATCATAACATGATACATAATTTCTGTTGTACCTTAAACCaatgaacatactgtatgttcaacTATCACAATGCTATGTGAAGCAATGTGAAGTGTCTCAGAACATTTCAGGGTAGCTGCTTGCCCAAAATGGTCAGGATTGCATAATTTCCTATATGAGGATATTATAGTGGTATACCTTTTCAATAATGTAAACCATGCATCTAACTGATAAATGAGGAAATAGGACTTAAGCCTTCTATACTTCAAGTGAGAAGACACTCACAATGTGAAAGCATACAGTTACAGGGTATAAATAATATAATAGTATGTTTATTATCGAACCATGTTTACTTGTGCTGTTAttaccgatgtgaaatggctagctagttagcggggtgcgcgctaatagcgtttcaatcgtaacgtcacttgctctgagaccttgaagtagttgttccccttgctcggcttttgtggagcgatgtgtAACTATGATTCAAGGGTGACTGTAGTCTATGTGTGCAGGGGGTCCCTGATTCGAGCCCAGGTAAGGGCaaagagagggacggaagctatatgGACTATGTTCAACTATAACTATAAGGATTTCTGTCGCTTGGTTTTGTGGCTAAAGGGAACATTTGAGGGTAGTTGTTCAGGATAAAATGGTTATGATTGCCTATATTTTCATAATGTATTATGAACATAATTTAGGGTGATTACACATGTTCATTATTAATGTATATGTAGATACAACTAACTATCAAAGCCAACATCTCCCTTCACTTGGAGCCACATGTTGAATGTCCCTTCTTGTGTTTTACTTGTTTTGAAATAAATGTTTTCTTTCATTCTAA
>TU38649
CCTCAGTCCTGCAGTCCCCTGCTGAACGCCATTATGACGACCACAGATGAGCAGGatgaagaggaagatgaagatTACAAGTATAATTACTTTTTATAGTGTACAGTCAGTCTACTGCCAAGGGTAGCGCACCGGGTTCCTTTGTGGAACCGGTGGGCAGAAGTCCATCTGAGGCACTGAAACAGGCCTTAAAACTAGGAGGAGGAACTCCTTCCAGATGAGGAAGGACTTAACCTCGAACAAAACAGACTATCACTATGCTATGTGAAGGTACTTGAAGGAATTTCTGAGTGGCTCAGAACATTTCAGGGTTGCTGCTTTGGCTAATGGTTAGGATTGCATAATTTACTATATGAGGATATTATGGTTGTAGATATCTTTTcaataatgtaagatatgtagatGCATCTAACCTCCAAACCCAGGATCTCTCCTGAAATGAAGCCACAAGTCTAAACTCCCATCTTCTGCTGTGTCATGCAAAAACTGCATCACAAACCACTGAAAGGCATAAAAGAGAGCCACTAGGAGACAGGAGGGCAGAGTTCCACCTGAGGTACTGAAGATAAGACAAGATGTCTACCAGGCCTTAAAGGGAGAAGCGGCGCCTaccagatgaggaaggaggactTAAGCCTTGAAACCATGAAGCGAGAAGACTCTCACAATATGAAGGCACTTTATTATGTTAATCATAACATGATACATAATTTCTGTTGTACCTTAAACCaatgaacatactgtatgttcaacTATCACAATGCTATGTGAAGCAATGTGAAGTGTCTCAGAACATTTCAGGGTAGCTGCTTGCCCAAAATGGTCAGGATTGCATAATTTCCTATATGAGGATATTATAGTGGTATACCTTTTCAATAATGTAAACCATGCATCTAACTGATAAATGAGGAAATAGGACTTAAGCCTTCTATACTTCAAGTGAGAAGACACTCACAATGTGAAAGCATACAGTTACAGGGTATAAATAATATAATAGTATGTTTATTATCGAACCATGTTTACTTGTGCTGTTAttaccgatgtgaaatggctagctagttagcggggtgcgcgctaatagcgtttcaatcgtaacgtcacttgctctgagaccttgaagtagttgttccccttgctcggcttttgtggagcgatgtgtAACTATGATTCAAGGGTGACTGTAGTCTATGTGTGCAGGGGGTCCCTGATTCGAGCCCAGGTAAGGGCaaagagagggacggaagctatatgGACTATGTTCAACTATAACTATAAGGATTTCTGTCGCTTGGTTTTGTGGCTAAAGGGAACATTTGAGGGTAGTTGTTCAGGATAAAATGGTTATGATTGCCTATATTTTCATAATGTATTATGAACATAATTTAGGGTGATTACACATGTTCATTATTAATGTATATGTAGATACAACTAACTATCAAAGCCAACATCTCCCTTCACTTGGAGCCACATGTTGAATGTCCCTTCTTGTGTTTTACTTGTTTTGAAATAAATGTTTTCTTTCATTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473145.2 False 1629 mRNA 0.41 2 32328710 32330586
TU38649 True 1528 lncRNA 0.40 2 32328711 32330486

Neighbor

gene id symbol gene type direction distance location
pex11a pex11a coding downstream 511 32324935 ~ 32328199 (-)
LOC110521366 LOC106573474 coding downstream 58480 32218758 ~ 32270230 (-)
LOC110521435 NA coding downstream 111432 32215495 ~ 32217278 (-)
LOC110521251 LOC106573484 coding downstream 331048 31989300 ~ 31997662 (-)
LOC110521239 LOC106573487 coding downstream 486707 31808912 ~ 31842003 (-)
LOC118964447 NA coding upstream 1373 32331943 ~ 32333416 (-)
LOC110521431 LOC106561184 coding upstream 12263 32342849 ~ 32351133 (-)
neto2b LOC106573471 coding upstream 35847 32366433 ~ 32378515 (-)
LOC110521335 LOC106573470 coding upstream 71790 32402376 ~ 32411173 (-)
pdp2 LOC106573473 coding upstream 86111 32416697 ~ 32422906 (-)
G34139 NA non-coding downstream 52034 32276446 ~ 32276676 (-)
G34136 NA non-coding downstream 55095 32273415 ~ 32273615 (-)
G34135 NA non-coding downstream 56444 32272052 ~ 32272266 (-)
G34098 NA non-coding downstream 113680 32214752 ~ 32215030 (-)
G34210 NA non-coding upstream 114339 32444925 ~ 32446401 (-)
G34242 NA non-coding upstream 146548 32477134 ~ 32477355 (-)
G34248 NA non-coding upstream 172742 32503328 ~ 32503549 (-)
G34257 NA non-coding upstream 186627 32517213 ~ 32517457 (-)
G33386 NA other downstream 342560 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 883761 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1195819 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3048010 29280276 ~ 29280700 (-)
G29355 NA other downstream 3624354 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 776533 33107119 ~ 33108497 (-)
G35299 NA other upstream 1111782 33442368 ~ 33452413 (-)
G35628 NA other upstream 1536972 33867558 ~ 33868045 (-)
G36141 NA other upstream 1947114 34277700 ~ 34362736 (-)
G36196 NA other upstream 2010976 34341562 ~ 34381232 (-)

Expression


Co-expression Network