LOC118964447


Basic Information

Item Value
gene id LOC118964447
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32331943 ~ 32333416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051487.1
gagcaggagaggagggggaggagtaggaggaggagaagagggttcTCAGGGTATATAAGGAAGATGCAGTGATTCATCTGTCCTTTCTATCCTGCGGACATGTCTGCTGAAGGATTCAGGGGGCTGGTGACCATAACCTTTTAACAGGTCACCCATGGAGTCCCATTCTGTCTGCTTGCTATGAATCATtgaggaggaggaggaggaggaggaggagaagaaatcCTGGGCTAGACTAAGGGCGGGTCGCGCCTCCCCCGCGACCGTCCGGTCATGAGAACACTACACATCGGGTGCGGCCTTCACTAGGGAGTAACGCAACAGTGGTGCTGCCTACCGCAGGAACAAGGCCGGTGCGTCGTGTTCCCATGCCGGGCCAGCAGGGGGTGACGTGTGCAGAGCCAGCGCTGCAGAAATGCAGTGACCTCGAAACAACTAACCAAAACTCAGACTACAGAAGCAAAACCACAAAAGCCAAAACTACTTTCCACTTCCCCTTTTCCCTTTGGCTTCTGGTGGTCTGCGTGCTTGGTTAGGTGGGCTCGAGGGAGGGGCCTGCTGATAAACACAATCCCATAATAGATTCACCTAAAAAGGCTGTACGCAACATTTACTGTAAAAACCaatgaaaatgtgaaaataaaaCTGTAAACACATGCAACTTTAA
>TU38645
CCTGCGGACATGTCTGCTGAAGGATTCAGGGGGCTGGTGACCATAACCTTTTAACAGGTCACCCATGGAGTCCCATTCTGTCTGCTTGCTATGAATCATtgaggaggaggaggaggaggaggaggagaagaaatcCTGGGCTAGACTAAGGGCGGGTCGCGCCTCCCCCGCGACCGTCCGGTCATGAGAACACTACACATCGGGTGCGGCCTTCACTAGGGAGTAACGCAACAGTGGTGCTGCCTACCGCAGGAACAAGGCCGGTGCGTCGTGTTCCCATGCCGGGCCAGCAGGGGGTGACGTGTGCAGAGCCAGCGCTGCAGAAATGCAGTGACCTCGAAACAACTAACCAAAACTCAGACTACAGAAGCAAAACCACAAAAGCCAAAACTACTTTCCACTTCCCCTTTTCCCTTTGGCTTCTGGTGGTCTGCGTGCTTGGTTAGGTGGGCTCGAGGGAGGGGCCTGCTGATAAACACAATCCCATAATAGATTCACCTAAAAAGGCTGTACGCAACATTTACTGTAAAAACCaatgaaaatgtgaaaataaaaCTGTAAACACATGCAACTTTAACATGTTTTGTCCAGTG
>TU38646
CCTGCGGACATGTCTGCTGAAGGATTCAGGGGGCTGGTGACCATAACCTTTTAACAGGTCACCCATGGAGTCCCATTCTGTCTGCTTGCTATGAATCATGgaggaggaggaggaggaggaggagaagaaatcCTGGGCTAGACTAAGGGCGGGTCGCGCCTCCCCCGCGACCGTCCGGTCATGAGAACACTACACATCGGGTGCGGCCTTCACTAGGGAGTAACGCAACAGTGGTGCTGCCTACCGCAGGAACAAGGCCGGTGCGTCGTGTTCCCATGCCGGGCCAGCAGGGGGTGACGTGTGCAGAGCCAGCGCTGCAGAAATGCAGTGACCTCGAAACAACTAACCAAAACTCAGACTACAGAAGCAAAACCACAAAAGCCAAAACTACTTTCCACTTCCCCTTTTCCCTTTGGCTTCTGGTGGTCTGCGTGCTTGGTTAGGTGGGCTCGAGGGAGGGGCCTGCTGATAAACACAATCCCATAATAGATTCACCTAAAAAGGCTGTACGCAACATTTACTGTAAAAACCaatgaaaatgtgaaaataaaaCTGTAAACACATGCAACTTTAACATGTTTTGTCCAGTG
>TU38647
CCTGCGGACATGTCTGCTGAAGGATTCAGGGGGCTGGTGACCATAACCTTTTAACAGGTCACCCATGGAGTCCCATTCTGTCTGCTTGCTATGAATCATtgaggaggaggaggaggaggaggaggagaagaaatcCTGGGCTAGACTAAGGGCGGGTCGCGCCTCCCCCGCGACCGTCCGGTCATGAGAACACTACACATCGGGTGCGGCCTTCACTAGGGAGTAACGCATTCCCATGCCGGGCCAGCAGGGGGTGACGTGTGCAGAGCCAGCGCTGCAGAAATGCAGTGACCTCGAAACAACTAACCAAAACTCAGACTACAGAAGCAAAACCACAAAAGCCAAAACTACTTTCCACTTCCCCTTTTCCCTTTGGCTTCTGGTGGTCTGCGTGCTTGGTTAGGTGGGCTCGAGGGAGGGGCCTGCTGATAAACACAATCCCATAATAGATTCACCTAAAAAGGCTGTACGCAACATTTACTGTAAAAACCaatgaaaatgtgaaaataaaaCTGTAAACACATGCAACTTTAACATGTTTTGTCCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051487.1 False 667 mRNA 0.52 3 32331959 32333416
TU38645 False 593 lncRNA 0.52 3 32331943 32333326
TU38646 False 590 lncRNA 0.38 3 32331943 32333326
TU38647 True 550 lncRNA 0.52 4 32331943 32333326

Neighbor

gene id symbol gene type direction distance location
LOC110521442 NA coding downstream 1373 32328710 ~ 32330586 (-)
pex11a pex11a coding downstream 3760 32324935 ~ 32328199 (-)
LOC110521366 LOC106573474 coding downstream 61729 32218758 ~ 32270230 (-)
LOC110521435 NA coding downstream 114681 32215495 ~ 32217278 (-)
LOC110521251 LOC106573484 coding downstream 334297 31989300 ~ 31997662 (-)
LOC110521431 LOC106561184 coding upstream 9433 32342849 ~ 32351133 (-)
neto2b LOC106573471 coding upstream 33017 32366433 ~ 32378515 (-)
LOC110521335 LOC106573470 coding upstream 68960 32402376 ~ 32411173 (-)
pdp2 LOC106573473 coding upstream 83281 32416697 ~ 32422906 (-)
LOC110521450 NA coding upstream 90448 32423864 ~ 32425249 (-)
G34139 NA non-coding downstream 55283 32276446 ~ 32276676 (-)
G34136 NA non-coding downstream 58344 32273415 ~ 32273615 (-)
G34135 NA non-coding downstream 59693 32272052 ~ 32272266 (-)
G34210 NA non-coding upstream 111509 32444925 ~ 32446401 (-)
G34242 NA non-coding upstream 143718 32477134 ~ 32477355 (-)
G34248 NA non-coding upstream 169912 32503328 ~ 32503549 (-)
G34257 NA non-coding upstream 183797 32517213 ~ 32517457 (-)
G34260 NA non-coding upstream 189263 32522679 ~ 32523065 (-)
G33386 NA other downstream 345809 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 887010 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1199068 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3051259 29280276 ~ 29280700 (-)
G29355 NA other downstream 3627603 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 773703 33107119 ~ 33108497 (-)
G35299 NA other upstream 1108952 33442368 ~ 33452413 (-)
G35628 NA other upstream 1534142 33867558 ~ 33868045 (-)
G36141 NA other upstream 1944284 34277700 ~ 34362736 (-)
G36196 NA other upstream 2008146 34341562 ~ 34381232 (-)

Expression


Co-expression Network