LOC110521431 (LOC106561184)


Basic Information

Item Value
gene id LOC110521431
gene name LOC106561184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32342849 ~ 32351133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598968.2
AAATAGATGACGTCGGGAGTTCCACGTTGGCCCGGACGTGGCAGCAGCATCAGAGGACAGAAATAAACGATTCTTGCTTTGGGTGTCACAAACATAACGATTCACGCCTCGTCTCAACAACGACAAGAATTTAGAAAAGCTTTGCTTAAAATTTTGACATTCACTCACAACATGGGGCTTCTCATCTCGTCAGTTTTTACCAGACTGTTCGGCAAGAAACAGATGAGAATACTTATGGTTGGCTTGGATGCTGCAGGGAAAACCACTATCTTGTACAAACTGAAGCTGGGAGAAATAGTGACCACCATTCCAACTATTGGCTTTAACGTGGAGACGGTGGAGTACAAGAACATCTGCTTCACAGTGTGGGATGTGGGTGGTCAGGACAAGATCAGACCTCTCTGGAGACACTACTTCCAGAACACACAGGGTCTGATCTTTGTAGTAGACagcaacgacagagagagagtggcggAGTCTGCAGAGGAGCTCTCCAAAATGctccagGAGGATGAGTTGAGAGAAGCAGTATTGCTGGTGTTTGCTAACAAGCAGGACCTTCCCAACGCTATGGCGGTCAGCGACCTCACGGACAAACTGGGACTGCAGAGCCTCCGCAGCAGAGTGTGGCACGTGCAGGCGACCTGTGCGACGCAGGGCACAGGACTGTATGAAGGACTGGACTGGCTTTCCAACGAGCTGTCCAAGCAGTAATACCGGACATCACAGACGAGAAAAGCAGAGCACGATAGAGAGGATGAGAACACCTCGGAGAGAGACTGAAACCTTTAATGAACTTTGGTCTTGAAGAACCTGTGCCCCTAGAGTGGACAGAACTTGTGGACAATGCAATCAATACCTATTGGAACATGTTATGTTACTACTCTTTTTACTTTATTGTCATCCCTTCAGATACTTGTCTAATCTTCACATTTTCCCCAACCTCATGTCTCGCAGCAGATAAACTGTCGCTCTGTTGCATGTTTAGAAATTGCTGCTCTGAGACACCTTGGAGACGACCCCTCTTTCCTCTGCACATTGTTCAGCTGGGTCGAAGTTGCCCCAAAACGCTGATCCTGggtcacttttttttatttttatatgctTATGGTTAAGATTAGGATTGGGTGTGttgtaatctgatcctagatctgtggttaagggCAACTTCTACCTCAAACTGTTCAGCTCCACTAGACTTCATGGACATTTTCACTGAAACAACCTTACCCCTCACCCCTGTGACCTCATTGCCATTCTGTCACCTCGGTAAGGACAGAAGCTTCTAGAATGAGATGAAGACACTGATGCCATAAACCTCAAGATGTTTGAGGAAGTTTTTGTGCCCTGGGAGCCAAATGGAACTCCTTTTAGTGAATGGAACCACTGGAAACAGTTGGCTCCTGGTACTTCCTATTTTCTTCATCTCATTGTAGAGTAGGTTTGCTCTGGGTTCTCCACATgtcctttttattttttatgcaaTAACCCATTTCCTAATGTGCTTTGATCTAAACTGGGAATCTGAAATGGTAAGGTAGTTGCTGCCACTAAGCATTGAAACGGGCTGAATACTTTTTCATCCACCTTATGGTTCAGGTTAGGATGGGTTATCTGATGTAGGAGCTGTGTTTAGGTACAACTTCTACCTCAAGCAAGTTGAAACCACACAAGGCTGTTTTGTGAGAATAAGCAGCACCTAACCCAGACTGCCTGTTCTAATACTTAAATGTTTTCTTCCCTCCTGCCCTTCCTTGAAATGTATTAGATTTAAGAAGTACTGGCTTGAAACAATGCAGTGGAAACCTTGTCCTCACTTGACCAATCTTTGATAACCTGAAGGAAAGGAAGCAGAAATTGTGTTTTCTAAGCATTGGAACAAGGCCAATATCAGTGTTGTATAGTGCAGGGGCATGCTTTGGTTCAGCTGCGCATGATTGTGGTTAGGTGTGCTCTTCTGGCTGATTTTGCACACTTAATCTGACTCTTCCACACACCCCTACTCAATCTCCCTGGGCTAGGCATACATTCCAGCTGACTGACTGCTTCTGGAAGCTGCCTCACAACTTTGAATGATCTGATAACTAATTGTTTTACAAAAGATCTCTAATAAATTCACCTGTTAAATTGTGTT

Function

NR:

description
PREDICTED: ADP-ribosylation factor 4-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598968.2 True 2134 mRNA 0.45 6 32342849 32351133

Neighbor

gene id symbol gene type direction distance location
LOC118964447 NA coding downstream 9433 32331943 ~ 32333416 (-)
LOC110521442 NA coding downstream 12263 32328710 ~ 32330586 (-)
pex11a pex11a coding downstream 14650 32324935 ~ 32328199 (-)
LOC110521366 LOC106573474 coding downstream 72619 32218758 ~ 32270230 (-)
LOC110521435 NA coding downstream 125571 32215495 ~ 32217278 (-)
neto2b LOC106573471 coding upstream 15300 32366433 ~ 32378515 (-)
LOC110521335 LOC106573470 coding upstream 51243 32402376 ~ 32411173 (-)
pdp2 LOC106573473 coding upstream 65564 32416697 ~ 32422906 (-)
LOC110521450 NA coding upstream 72731 32423864 ~ 32425249 (-)
LOC110521397 LOC106573476 coding upstream 99714 32450847 ~ 32457200 (-)
G34139 NA non-coding downstream 66173 32276446 ~ 32276676 (-)
G34136 NA non-coding downstream 69234 32273415 ~ 32273615 (-)
G34135 NA non-coding downstream 70583 32272052 ~ 32272266 (-)
G34210 NA non-coding upstream 93792 32444925 ~ 32446401 (-)
G34242 NA non-coding upstream 126001 32477134 ~ 32477355 (-)
G34248 NA non-coding upstream 152195 32503328 ~ 32503549 (-)
G34257 NA non-coding upstream 166080 32517213 ~ 32517457 (-)
G34260 NA non-coding upstream 171546 32522679 ~ 32523065 (-)
G33386 NA other downstream 356699 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 897900 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1209958 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3062149 29280276 ~ 29280700 (-)
G29355 NA other downstream 3638493 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 755986 33107119 ~ 33108497 (-)
G35299 NA other upstream 1091235 33442368 ~ 33452413 (-)
G35628 NA other upstream 1516425 33867558 ~ 33868045 (-)
G36141 NA other upstream 1926567 34277700 ~ 34362736 (-)
G36196 NA other upstream 1990429 34341562 ~ 34381232 (-)

Expression


Co-expression Network