LOC110521335 (LOC106573470)


Basic Information

Item Value
gene id LOC110521335
gene name LOC106573470
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32402376 ~ 32411173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975856.1
AATGTATCTCTGACGCTCAGTCTTTTTATGTGTTTCAAAATGGCAGAAGCCATGGACTCGGTCAGTTGTTCGATCTGTTTGGAGATACTAAAAGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATTGGCTGTATTAAAGGCTACTGGGATCAGGAAGATCGGAAGCTTGTCTGCAGCTGTCCCCAGTGCAGACAGACCTTCAACCCAAGGCCTTTTCTGAACAGAAACACAGTTATGGCTGAAATGGTGAAGACACTGACAGAAAAAAATactaaaaagaagaagaagaagaagacaaaactCCAAACTGCTCCTCCTGCTCACTGTTATGCTGGACCTGGAGATGTTGATTGTGACGTCTGCACTGGGACAAAATTAAAAGCTGTCAAGTTctgtctggtgtgtctggccTCTTACTGTGAGACACACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGATGGTCAAGGCCTCCACACAACTCCAGGAGAAGATCTGCTCTCATCATGACAAACTACTGGAGGTTTACTGCCGGACAGATCAGCAATGTATCTGTCATCTGTGTATGTTGGATCAACATAAAGGCCATGATACAGTCTCTGCTGCAGCCGAAATAGCTGAAAAACAAAGGCAGTTGGGGGAGAAATCTAAGCAGAGaatcaaggagagagagaaggagatgctGGAGGTGAGACAGGCTGTGAAGTCATTCAAGCACTCTACACAGGCAGCAGTTGAGAGTAGTGAGAAGATCTTTAATGAACTGATCCGCTCCATTGAGGGAAGGCGCACTGAGGTGAAGGAGCTTATCAGAGCCCAGGAGAAGGCTAATGTGAGTCGGGCTGAAGGACTCCTGAAGCAGCTGGAGCAGGAGGTGGCTgagctgaagaggagagaggctgagctggagcagctttcacacacagaggatcacatCCATTTCCTCCAGGTGACGTCACTGTCCATTGCAGCAGAGCTTCcagtctctctgtgtccctcctgGGTCTGAGACCTTACCCAGCATCACTATCAACCATCACGTCTCCTTTGAGGATGTTATGaactctgtctctgagctgaGAAACCGACTTCAAGATATCTGCGCTGGAGAGATAATTATGTTGTCTGTACAAA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975856.1 True 1151 mRNA 0.47 4 32402376 32411173

Neighbor

gene id symbol gene type direction distance location
neto2b LOC106573471 coding downstream 23861 32366433 ~ 32378515 (-)
LOC110521431 LOC106561184 coding downstream 51243 32342849 ~ 32351133 (-)
LOC118964447 NA coding downstream 68960 32331943 ~ 32333416 (-)
LOC110521442 NA coding downstream 71790 32328710 ~ 32330586 (-)
pex11a pex11a coding downstream 74177 32324935 ~ 32328199 (-)
pdp2 LOC106573473 coding upstream 5524 32416697 ~ 32422906 (-)
LOC110521450 NA coding upstream 12691 32423864 ~ 32425249 (-)
LOC110521397 LOC106573476 coding upstream 39674 32450847 ~ 32457200 (-)
LOC110521272 LOC106597893 coding upstream 74072 32485245 ~ 32500835 (-)
LOC110532201 LOC106573459 coding upstream 119093 32530266 ~ 32734449 (-)
G34139 NA non-coding downstream 125700 32276446 ~ 32276676 (-)
G34136 NA non-coding downstream 128761 32273415 ~ 32273615 (-)
G34135 NA non-coding downstream 130110 32272052 ~ 32272266 (-)
G34210 NA non-coding upstream 33752 32444925 ~ 32446401 (-)
G34242 NA non-coding upstream 65961 32477134 ~ 32477355 (-)
G34248 NA non-coding upstream 92155 32503328 ~ 32503549 (-)
G34257 NA non-coding upstream 106040 32517213 ~ 32517457 (-)
G34260 NA non-coding upstream 111506 32522679 ~ 32523065 (-)
G33386 NA other downstream 416226 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 957427 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1269485 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3121676 29280276 ~ 29280700 (-)
G29355 NA other downstream 3698020 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 695946 33107119 ~ 33108497 (-)
G35299 NA other upstream 1031195 33442368 ~ 33452413 (-)
G35628 NA other upstream 1456385 33867558 ~ 33868045 (-)
G36141 NA other upstream 1866527 34277700 ~ 34362736 (-)
G36196 NA other upstream 1930389 34341562 ~ 34381232 (-)

Expression


Co-expression Network