LOC110521397 (LOC106573476)


Basic Information

Item Value
gene id LOC110521397
gene name LOC106573476
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32450847 ~ 32457200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598936.2
CTGCTGTTTTATGTTAGTGTGCTTTTCACTCGAGGCTGTTTCAGCTTGTTCAGCAATCGGCGACCCCGCCTACCTCATCAGCTCTCTTTTGTTCTTTCTCCGTTCAATTTCATCTCCTGAACACAAGGTCCGCTCATTCCCCGTTTATTAATGCTAATTTGTATGAATATGCGCAGCTGTGGAGGTCTCAGTGCGGTGTTCGGGTTACTTTGGTGATGGGTGCACCATGGGAAACAAGATCAGCAGAAGACGGGACACTGCACCAGCCGAGCAGAAGGCTGCAGAGGAGGCAATCGACACGCAGGAAGCTGTGGTGGAGGCAGTAGCTGATGCGCCAGTGGTGGTTGCAGAGGCGACTGAACCAGTAGTCGAATCAGTGCCAGCACTGGTACAGGAGGCTGAGCCAGAGCCCCCCAAGCAGCCAGAGACGGAGCCCTCATTGGAGGAGCTGGTGAGCGTCCCACTAGTAGCCCCAGCACCGCCTGAACCCGAGCCCCTGGTGTCAGTCAGCAAACCAGTGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCATAGAACAGGAGGCTGTCCCAGAGCCAAACCTCTCCCAGGAGTTCCTCCTACAGCCAGTCATTCCAGAGCCCTTCCcctcccccgcccctcttctGGACCTGGGTGTCCCTGAGCTGACCCCTAAGCCCCTCGATGCTCCCCCCTCCCACAGATCTGCCCCAGACCAGCCCACAGACCTGGGGGGTGCAGAATGCTATGACGACAAAGTAAAGGCTGCCTGGAATTCTGTCTCCGTCCCAGAAGAGTCCAAAGAAACCCCGGAGAAGCCAGCAACCATGGCGGAGAAGCTTCTGTGTGATGTCATGGGCAGCGAGCTGAGCAAAGCGGATTCTTCAACCACTTAGACCTGACGGCCGATGACATCATGGTCAATGATGTCATAGCAGACGACATTCCGGAAGGTGACGTGTCCACTGAGCTGATATGGGcggagaaaataaaaataaaaactagaaGAAAAAAATGGACAATGACGTTCTAAAAAAGGCAGACGCAGCAGAAAAAAAATTTATAAAAAAAGAGTACAACTTTGATCTGAGAAGGCTAAAGGGAAAACTAAGACCGTGAAGTAGCAATCAGATAATCTGAGACCTGGGATGTATTCCctaggaaccaaacagaaccAAGCGTACGCAAACGGAATTAAACTGGgtgggacctacctgaatttgtccaatagaaattcTAGTTTCTGTTGCGAAACATTTTGGAATAATGATTAGACCCCAGGTAATAGACATGCCTTTCTTTCTGAGTGTAGGTTGACTAAAGGGATTTGGTGATGGGTGGCCAGGGCAGAAGTGTACCCATCATCGCCCTCTGAGCCATATAGACATAACACTGCATAGTAGAACACTTACAGTAACTATGTGGTAACTATGTATGACAAGACGTTTGCCTTGGTGTGTACGCCTGATGAATTGTAACAACGTTTGAAATCGGCCTACATTCTATGATGTACATTCATGCTTGGACTCTCTCAATCCTTCCTCTTTAACTCTGAAACGGAGGTGACCTTATTATATTTTCTTGGTGGTGAGAAGTGGTTTGAAGGAATGTATTAAAGGTGATGGTCTGGTTGTGAAAATAAAATAAGATTGTTCCACCTTGAA
>XM_021598930.2
TATCTGTTGGAACATGGTCACAGTCTCCGGGCGTACGAGCGACAGTGGGCGcgcgcacaaatacacacatcccAGACAACACGCACTAAACCTCTGTCCAAACTTTCCTCCCCTTCAGTCTGTGCGTGCCTCGCCAAGTCGTGAGAGCGCAAGAAGAACTTTCCGCTCTCTAGCACGGCTAAATTCACGTTTTAATTCCGCTACCAAGGTGCACCATGGGAAACAAGATCAGCAGAAGACGGGACACTGCACCAGCCGAGCAGAAGGCTGCAGAGGAGGCAATCGACACGCAGGAAGCTGTGGTGGAGGCAGTAGCTGATGCGCCAGTGGTGGTTGCAGAGGCGACTGAACCAGTAGTCGAATCAGTGCCAGCACTGGTACAGGAGGCTGAGCCAGAGCCCCCCAAGCAGCCAGAGACGGAGCCCTCATTGGAGGAGCTGGTGAGCGTCCCACTAGTAGCCCCAGCACCGCCTGAACCCGAGCCCCTGGTGTCAGTCAGCAAACCAGTGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCATAGAACAGGAGGCTGTCCCAGAGCCAAACCTCTCCCAGGAGTTCCTCCTACAGCCAGTCATTCCAGAGCCCTTCCcctcccccgcccctcttctGGACCTGGGTGTCCCTGAGCTGACCCCTAAGCCCCTCGATGCTCCCCCCTCCCACAGATCTGCCCCAGACCAGCCCACAGACCTGGGGGGTGCAGAATGCTATGACGACAAAGTAAAGGCTGCCTGGAATTCTGTCTCCGTCCCAGAAGAGTCCAAAGAAACCCCGGAGAAGCCAGCAACCATGGCGGAGAAGCTTCTGTGTGATGTCATGGGCAGCGAGCTGAGCAAAGCGGATTCTTCAACCACTTAGACCTGACGGCCGATGACATCATGGTCAATGATGTCATAGCAGACGACATTCCGGAAGGTGACGTGTCCACTGAGCTGATATGGGcggagaaaataaaaataaaaactagaaGAAAAAAATGGACAATGACGTTCTAAAAAAGGCAGACGCAGCAGAAAAAAAATTTATAAAAAAAGAGTACAACTTTGATCTGAGAAGGCTAAAGGGAAAACTAAGACCGTGAAGTAGCAATCAGATAATCTGAGACCTGGGATGTATTCCctaggaaccaaacagaaccAAGCGTACGCAAACGGAATTAAACTGGgtgggacctacctgaatttgtccaatagaaattcTAGTTTCTGTTGCGAAACATTTTGGAATAATGATTAGACCCCAGGTAATAGACATGCCTTTCTTTCTGAGTGTAGGTTGACTAAAGGGATTTGGTGATGGGTGGCCAGGGCAGAAGTGTACCCATCATCGCCCTCTGAGCCATATAGACATAACACTGCATAGTAGAACACTTACAGTAACTATGTGGTAACTATGTATGACAAGACGTTTGCCTTGGTGTGTACGCCTGATGAATTGTAACAACGTTTGAAATCGGCCTACATTCTATGATGTACATTCATGCTTGGACTCTCTCAATCCTTCCTCTTTAACTCTGAAACGGAGGTGACCTTATTATATTTTCTTGGTGGTGAGAAGTGGTTTGAAGGAATGTATTAAAGGTGATGGTCTGGTTGTGAAAATAAAATAAGATTGTTCCACCTTGAA
>XM_036975868.1
TATCTGTTGGAACATGGTCACAGTCTCCGGGCGTACGAGCGACAGTGGGCGcgcgcacaaatacacacatcccAGACAACACGCACTAAACCTCTGTCCAAACTTTCCTCCCCTTCAGTCTGTGCGTGCCTCGCCAAGTCGTGAGAGCGCAAGAAGAACTTTCCGCTCTCTAGCACGGCTAAATTCACGTTTTAATTCCGCTACCAAGGTGCACCATGGGAAACAAGATCAGCAGAAGACGGGACACTGCACCAGCCGAGCAGAAGGCTGCAGAGGAGGCAATCGACACGCAGGAAGCTGTGGTGGAGGCAGTAGCTGATGCGCCAGTGGTGGTTGCAGAGGCGACTGAACCAGTAGTCGAATCAGTGCCAGCACTGGTACAGGAGGCTGAGCCAGAGCCCCCCAAGCAGCCAGAGACGGAGCCCTCATTGGAGGAGCTGGTGAGCGTCCCACTAGTAGCCCCAGCACCGCCTGAACCCGAGCCCCTGGTGTCAGTCAGCAAACCAGTGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCCCGGAGCCAAAGCCAGTCGTCATAGAACAGGAGGCTGTCCCAGAGCCAAACCTCTCCCAGGAGTTCCTCCTACAGCCAGTCATTCCAGAGCCCTTCCcctcccccgcccctcttctGGACCTGGGTGTCCCTGAGCTGACCCCTAAGCCCCTCGATGCTCCCCCCTCCCACAGATCTGCCCCAGACCAGCCCACAGACCTGGGGGGTGCAGAATGCTATGACGACAAAGTAAAGGCTGCCTGGAATTCTGTCTCCGTCCCAGAAGAGTCCAAAGAAACCCCGGAGAAGCCAGCAACCATGGCGGAGAAGCTTCTGTGTGATGTCATGGGCAGCGAGCTGAGCAAAGCGGATTCTTCAACCACTTAGACCTGACGGCCGATGACATCATGGTCAATGATGTCATAGCAGACGACATTCCGGAAGGTGACGTGTCCACTGAGCTGATATGGGcggagaaaataaaaataaaaactagaaGAAAAAAATGGACAATGACGTTCTAAAAAAGGCAGACGCAGCAGAAAAAAAATTTATAAAAAAAGAGTACAACTTTGATCTGAGAAGGCTAAAGGGAAAACTAAGACCGTGAAGTAGCAATCAGATAATCTGAGACCTGGGATGTATTCCctaggaaccaaacagaaccAAGCGTACGCAAACGGAATTAAACTGGgtgggacctacctgaatttgtccaatagaaattcTAGTTTCTGTTGCGAAACATTTTGGAATAATGATTAGACCCCAGGTAATAGACATGCCTTTCTTTCTGAGTGTAGGTTGACTAAAGGGATTTGGTGATGGGTGGCCAGGGCAGAAGTGTACCCATCATCGCCCTCTGAGCCATATAGACATAACACTGCATAGTAGAACACTTACAGTAACTATGTGGTAACTATGTATGACAAGACGTTTGCCTTGGTGTGTACGCCTGATGAATTGTAACAACGTTTGAAATCGGCCTACATTCTATGATGTACATTCATGCTTGGACTCTCTCAATCCTTCCTCTTTAACTCTGAAACGGAGGTGACCTTATTATATTTTCTTGGTGGTGAGAAGTGGTTTGAAGGAATGTATTAAAGGTGATGGTCTGGTTGTGAAAATAAAATAAGATTGTTCCACCTTGAA

Function

NR:

description
protein TsetseEP-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598936.2 False 1768 mRNA 0.50 2 32450847 32456906
XM_021598930.2 False 1757 mRNA 0.51 2 32450847 32457200
XM_036975868.1 True 1715 mRNA 0.51 3 32450847 32457200

Neighbor

gene id symbol gene type direction distance location
LOC110521450 NA coding downstream 25598 32423864 ~ 32425249 (-)
pdp2 LOC106573473 coding downstream 27941 32416697 ~ 32422906 (-)
LOC110521335 LOC106573470 coding downstream 39674 32402376 ~ 32411173 (-)
neto2b LOC106573471 coding downstream 72332 32366433 ~ 32378515 (-)
LOC110521431 LOC106561184 coding downstream 99714 32342849 ~ 32351133 (-)
LOC110521272 LOC106597893 coding upstream 28045 32485245 ~ 32500835 (-)
LOC110532201 LOC106573459 coding upstream 73066 32530266 ~ 32734449 (-)
LOC110521494 LOC106573457 coding upstream 303997 32761197 ~ 32783979 (-)
LOC118964459 NA coding upstream 382245 32839445 ~ 32844732 (-)
grm3 LOC106573453 coding upstream 417716 32867631 ~ 32924599 (-)
G34210 NA non-coding downstream 4446 32444925 ~ 32446401 (-)
LOC118964447 NA non-coding downstream 117521 32331943 ~ 32333416 (-)
LOC110521442 NA non-coding downstream 120361 32328710 ~ 32330586 (-)
G34139 NA non-coding downstream 174171 32276446 ~ 32276676 (-)
G34136 NA non-coding downstream 177232 32273415 ~ 32273615 (-)
G34242 NA non-coding upstream 19934 32477134 ~ 32477355 (-)
G34248 NA non-coding upstream 46128 32503328 ~ 32503549 (-)
G34257 NA non-coding upstream 60013 32517213 ~ 32517457 (-)
G34260 NA non-coding upstream 65479 32522679 ~ 32523065 (-)
G34298 NA non-coding upstream 157294 32614494 ~ 32616115 (-)
G33386 NA other downstream 464697 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 1005898 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1317956 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3170147 29280276 ~ 29280700 (-)
G29355 NA other downstream 3746491 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 649919 33107119 ~ 33108497 (-)
G35299 NA other upstream 985168 33442368 ~ 33452413 (-)
G35628 NA other upstream 1410358 33867558 ~ 33868045 (-)
G36141 NA other upstream 1820500 34277700 ~ 34362736 (-)
G36196 NA other upstream 1884362 34341562 ~ 34381232 (-)

Expression


Co-expression Network