LOC110521494 (LOC106573457)


Basic Information

Item Value
gene id LOC110521494
gene name LOC106573457
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32761197 ~ 32783979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599082.2
AAAGCAGCGTGTGTGCTTTGGCTATAGCCTATCCATCGGGCCGCGTGTAGTGCCCGATTTAATCATCTAGATTTGTTTGATTTTCTTGAAACAACGCCGCCCTGATAAGAAGTGTTCAATTTGAGGCTATAGAAACGGAGATATTGCGAAACAGAAACTCGGGAGTCATTGTTGCTTTAAAAGCGCATATTGTTTCGCTAACGGGACAGTGAAGAAAGAAGCAGAAGAGATTCAGAATAAGACCGTTGTTTCGCCCATCTGTCTACCTCCAATCAATCCAGTCATTATCAACTTCAGGACTTTAACCAATGAGTTTATGGAACCTGTTGGAGAAAATCGGTGTGTGGAcccaggtctgtctctgtctcggggCAGGAGTGTGATGGCTGAGCCGGACTATCTGGAGGGGGACTGTGAGGAGATGATCAAACCGAAGAAGCTGTTGAACCCAGTCAAGGGCTCCAGAAACCACCAAGACCTCCATCGAGAACTCATGATGAACCAGAAGATGGGCCTAGCTCCCCAGAACAAGCCAGAGCTCCAGAAGGTTCTGGAGCTGAGGAAGCGAGAGCAGGTTCTCAAGGCCCAGAGGGAGGAGCAGGAGGCCCACACCAAAAGGAGCGACCTGGAGATAGAATTAATGAAGAGACAACAGAAACTAGAACAGCTGGAGTTGGACCAGCAGAAGgatgaggaggagcaggagaacaCCCCTGAGTTTGTGAAGATGAAGAGCAATCTTAGGAGGACCAAGCAGGAGGCTAATGGGGAGGAACGTACCACTTAGGGGCCCATGGGGGGGGAGAATgtttgagagagaaggagagggcaaCTGTGTACATAGaggtatgtttgtgtgtttgtgcagagTCTATGGCACATGTCATCTGAGGTGGAATTCACTTCCTGATTCTGATTTTTCTGACCCTGTTGAGAAAGACTACAGACAATTTTGTCTGTCTACTAAATACCAACAGTACTACAGACCTCTTTGTCTGTCTGCTACAGCACTCACCACAGGCAGTGACCAAGGAAACTTAACCACGTCAGCTTCTCTCACCAACAGACCGACTTTGCAGAGAAGAGAATCCCCTATAGACTACAGACTGCTTTGTCTGCCTGCTGTAGTACTCACATCAGCATCTCcactcaacacacagacagagaggagacttaACATGGACACAAAACACGGAACATGCTACACATGGACAGTCAGCCAGTCTTCTTGGAAGCCTGATGCAGGGACAAACAGAACCCACacattccctctctcctgtctgctcctctctctccggCCACAGAAAGTTATCCTTCTGTTATTGTTGTCGTTGTTTTCATTTTCAGAACCCAGAATAGAAAAGCGGACACTGGATGGACTCTTAAAACTGTGTTTTGTAAAAATGCCAAATTAATGTGCTGTTATTTATGTTTGTAGCATTTTAGCCCCATGTAGGGAGTGTGTGAGACATCTGTTTAGTTTTACAGCTCAATGTGTGGAACCTGAGCAGGACAGGACGAGTGTTTGTGTGAAAAAACACCCaggttacttttttattttttatctccaACATACCACTTCCTCAGCTAATGCTATTTGAAGCAATACTAGAACCCCTTTCAAGTGTGAGACTTTTCTTTCTATAATTATAATGGTTTCTATAATTGTTTTTTGTATGAATAAAAGTGACATTAAATCAG
>XM_021599091.2
ATTCATTTAAATGTTCTATGGGCCGAATGTGTATGTAGGGCAGTTGAACAGTTTCATAGAAGCACCAAATCAGATTCGCAGACACACCTAAACGGAGAAGTGAACTGGAGAAGCACTGATGAGGCTCAAAACCACTTTGCCCTTTTAATTATTTAACTAGTCGACTTGGAGAAGTAGCGTCGGGATCGATTTTAGATCGGTGTGTGGAcccaggtctgtctctgtctcggggCAGGAGTGTGATGGCTGAGCCGGACTATCTGGAGGGGGACTGTGAGGAGATGATCAAACCGAAGAAGCTGTTGAACCCAGTCAAGGGCTCCAGAAACCACCAAGACCTCCATCGAGAACTCATGATGAACCAGAAGATGGGCCTAGCTCCCCAGAACAAGCCAGAGCTCCAGAAGGTTCTGGAGCTGAGGAAGCGAGAGCAGGTTCTCAAGGCCCAGAGGGAGGAGCAGGAGGCCCACACCAAAAGGAGCGACCTGGAGATAGAATTAATGAAGAGACAACAGAAACTAGAACAGCTGGAGTTGGACCAGCAGAAGgatgaggaggagcaggagaacaCCCCTGAGTTTGTGAAGATGAAGAGCAATCTTAGGAGGACCAAGCAGGAGGCTAATGGGGAGGAACGTACCACTTAGGGGCCCATGGGGGGGGAGAATgtttgagagagaaggagagggcaaCTGTGTACATAGaggtatgtttgtgtgtttgtgcagagTCTATGGCACATGTCATCTGAGGTGGAATTCACTTCCTGATTCTGATTTTTCTGACCCTGTTGAGAAAGACTACAGACAATTTTGTCTGTCTACTAAATACCAACAGTACTACAGACCTCTTTGTCTGTCTGCTACAGCACTCACCACAGGCAGTGACCAAGGAAACTTAACCACGTCAGCTTCTCTCACCAACAGACCGACTTTGCAGAGAAGAGAATCCCCTATAGACTACAGACTGCTTTGTCTGCCTGCTGTAGTACTCACATCAGCATCTCcactcaacacacagacagagaggagacttaACATGGACACAAAACACGGAACATGCTACACATGGACAGTCAGCCAGTCTTCTTGGAAGCCTGATGCAGGGACAAACAGAACCCACacattccctctctcctgtctgctcctctctctccggCCACAGAAAGTTATCCTTCTGTTATTGTTGTCGTTGTTTTCATTTTCAGAACCCAGAATAGAAAAGCGGACACTGGATGGACTCTTAAAACTGTGTTTTGTAAAAATGCCAAATTAATGTGCTGTTATTTATGTTTGTAGCATTTTAGCCCCATGTAGGGAGTGTGTGAGACATCTGTTTAGTTTTACAGCTCAATGTGTGGAACCTGAGCAGGACAGGACGAGTGTTTGTGTGAAAAAACACCCaggttacttttttattttttatctccaACATACCACTTCCTCAGCTAATGCTATTTGAAGCAATACTAGAACCCCTTTCAAGTGTGAGACTTTTCTTTCTATAATTATAATGGTTTCTATAATTGTTTTTTGTATGAATAAAAGTGACATTAAATCAG
>XM_021599101.2
GGCATTCATTTAAATGTTCTATGGGCCGAATGTGTATGTAGGGCAGTTGAACAGTTTCATAGAAGCACCAAATCAGATTCGCAGACACACCTAAACGGAGAAGTGAACTGGAGAAGCACTGATGAGGCTCAAAACCACTTTGCCCTTTTAATTATTTAACTAGTCGACTTGGAGAAGTAGCGTCGGGATCGATTTTAGGTAGATCGGTGTGTGGAcccaggtctgtctctgtctcggggCAGGAGTGTGATGGCTGAGCCGGACTATCTGGAGGGGGACTGTGAGGAGATGATCAAACCGAAGAAGCTGTTGAACCCAGTCAAGGGCTCCAGAAACCACCAAGACCTCCATCGAGAACTCATGATGAACCAGAAGATGGGCCTAGCTCCCCAGAACAAGCCAGAGCTCCAGAAGGTTCTGGAGCTGAGGAAGCGAGAGCAGGTTCTCAAGGCCCAGAGGGAGGAGCAGGAGGCCCACACCAAAAGGAGCGACCTGGAGATAGAATTAATGAAGAGACAACAGAAACTAGAACAGCTGGAGTTGGACCAGCAGAAGgatgaggaggagcaggagaacaCCCCTGAGTTTGTGAAGATGAAGAGCAATCTTAGGAGGACCAAGCAGGAGGCTAATGGGGAGGAACGTACCACTTAGGGGCCCATGGGGGGGGAGAATgtttgagagagaaggagagggcaaCTGTGTACATAGaggtatgtttgtgtgtttgtgcagagTCTATGGCACATGTCATCTGAGGTGGAATTCACTTCCTGATTCTGATTTTTCTGACCCTGTTGAGAAAGACTACAGACAATTTTGTCTGTCTACTAAATACCAACAGTACTACAGACCTCTTTGTCTGTCTGCTACAGCACTCACCACAGGCAGTGACCAAGGAAACTTAACCACGTCAGCTTCTCTCACCAACAGACCGACTTTGCAGAGAAGAGAATCCCCTATAGACTACAGACTGCTTTGTCTGCCTGCTGTAGTACTCACATCAGCATCTCcactcaacacacagacagagaggagacttaACATGGACACAAAACACGGAACATGCTACACATGGACAGTCAGCCAGTCTTCTTGGAAGCCTGATGCAGGGACAAACAGAACCCACacattccctctctcctgtctgctcctctctctccggCCACAGAAAGTTATCCTTCTGTTATTGTTGTCGTTGTTTTCATTTTCAGAACCCAGAATAGAAAAGCGGACACTGGATGGACTCTTAAAACTGTGTTTTGTAAAAATGCCAAATTAATGTGCTGTTATTTATGTTTGTAGCATTTTAGCCCCATGTAGGGAGTGTGTGAGACATCTGTTTAGTTTTACAGCTCAATGTGTGGAACCTGAGCAGGACAGGACGAGTGTTTGTGTGAAAAAACACCCaggttacttttttattttttatctccaACATACCACTTCCTCAGCTAATGCTATTTGAAGCAATACTAGAACCCCTTTCAAGTGTGAGACTTTTCTTTCTATAATTATAATGGTTTCTATAATTGTTTTTTGTATGAATAAAAGTGACATTAAATCAG

Function

NR:

description
protein FAM107B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599082.2 False 1701 mRNA 0.45 4 32761197 32783714
XM_021599091.2 False 1561 mRNA 0.46 4 32761197 32783976
XM_021599101.2 True 1568 mRNA 0.46 4 32761197 32783979

Neighbor

gene id symbol gene type direction distance location
LOC110532201 LOC106573459 coding downstream 26748 32530266 ~ 32734449 (-)
LOC110521272 LOC106597893 coding downstream 260362 32485245 ~ 32500835 (-)
LOC110521397 LOC106573476 coding downstream 303997 32450847 ~ 32457200 (-)
LOC110521450 NA coding downstream 335948 32423864 ~ 32425249 (-)
pdp2 LOC106573473 coding downstream 338291 32416697 ~ 32422906 (-)
LOC118964459 NA coding upstream 55466 32839445 ~ 32844732 (-)
grm3 LOC106573453 coding upstream 90937 32867631 ~ 32924599 (-)
lrrc4.2 LOC106573446 coding upstream 940870 33724849 ~ 33729966 (-)
rbm28 rbm28 coding upstream 1160855 33944834 ~ 33953935 (-)
LOC118966666 LOC106573442 coding upstream 1175349 33959328 ~ 33962096 (-)
G34348 NA non-coding downstream 423 32760172 ~ 32760774 (-)
G34406 NA non-coding downstream 6443 32754388 ~ 32754754 (-)
G34399 LOC106573462 non-coding downstream 6995 32748929 ~ 32754202 (-)
G34392 NA non-coding downstream 35116 32725800 ~ 32726081 (-)
G34391 NA non-coding downstream 36326 32724585 ~ 32724871 (-)
G34458 NA non-coding upstream 50688 32834667 ~ 32835184 (-)
G34457 NA non-coding upstream 51267 32835246 ~ 32836115 (-)
G34484 NA non-coding upstream 118407 32902386 ~ 32902678 (-)
G34510 NA non-coding upstream 169644 32953623 ~ 32953861 (-)
G33386 NA other downstream 775047 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 1316248 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1628306 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3480497 29280276 ~ 29280700 (-)
G29355 NA other downstream 4056841 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 323140 33107119 ~ 33108497 (-)
G35299 NA other upstream 658389 33442368 ~ 33452413 (-)
G35628 NA other upstream 1083579 33867558 ~ 33868045 (-)
G36141 NA other upstream 1493721 34277700 ~ 34362736 (-)
G36196 NA other upstream 1557583 34341562 ~ 34381232 (-)

Expression

LOC110521494(LOC106573457) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110521494(LOC106573457) Expression in each Bioproject

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LOC110521494(LOC106573457) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network