LOC118964459


Basic Information

Item Value
gene id LOC118964459
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32839445 ~ 32844732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051510.1
GGTCCCTTCGTCCCGAATGCCAGccgaaaagagaggaggagagcgctaCCAGCGATAAACCAAGACCGGGAAGGCATAATAGGAACCTGGGAATAGAGCGATGTCAAAAAGCTAAAATACTGCCTCAACAAATGGAAGCAGCAGTTAATAAGGACATCTCCAAGATGGTCAGTGAACAGGGACACCTACTTCGCCAACACCACAACCAGCTGACACAACTGGGGAAGGCTATGGATGAGGCCCTCCATGTTCTTCAACAGCTCGACAGTCCCAGAGGGGTGTCACCTCCAACAAGCGGAGGATTCTCTACCACAGTTTGACCCAGCGAGCCCGCACACCAGCCCATCCAACAGTCGACCCAGGTCAGCGATGCCTCCCGGACAAATACGACAGCTCTCCCTCAAAATGCTGTGGCTTCCTActccagtgctccctctatttcACTCATCAGATGGGATCCCCCACCATGGGgaggtccaaggttgccacgGTTATTTCCCTGCTGAGAGGACGGGCGTTGGTGGGGGCTACagctgtctggaggagaggaggagctgggTTCCTATAAGGGGTTCATGGTTCTGTTAAGGGGGTCTTCCACCATCCaccggagggcagagagggaggtgagtgCTTAATCCAACTATGGCAGGATGGCCAGACCACAACGGAGTATGCACTCATCTTTGTGACAGCGGATGGAATGAGCGGGCACTCTGCACCATATTCAGAAGAGGATTGCGCGAAGATGACAATCTAACCTTGGACACACTCGTTGCGATGGCCATCTGTCTGGATAACCTTCTTCGGGAACATCGTCACCCCcatcgcctctcctcctccttcattgTCTGTTCTGAGTgagagcctgaacccatggaggtaggTGCTCCAAGCAGCTGAGCTACGCCGGACAGGGGCTCTGTCCCTATTGTGGCCAGGAGTGGCCCCAGCTTCAATGGTGTCCAGTACGTCCCAACCCAGGATCCACGAGAGCAGAGGGTTTGCCCCATGATCATGCATCTCCTGTGTTAGGCGTGAGTAATCCATCACTTTTCCCTAAACCTTTTTTAGTATTGATTTCACCAGCTGGCTGTTCCTCATCTATTGTTTCTACAGCTCTAGCGGACTCCGGTGCCACAGGGAATTTTATTGACCAGGCCCTTGCCTCCTCCCTGTACATCACCTTATTCCCGCTCTCCTCTCAGTTTCCGGTCCAAGTGTTGGATTTGCGACCGTTTGGCTCAGGCATCATGACGCACATCACAGCTCCACTCACCCTCACCATGGGACCCAAGCACCAAGAAAGCCTTCCCTTCCTCATCACCTCTGCACCGGTGCACAAAGTCATCCTTGGCCTTCTGTGGCTCCAACTCCATAATCCCACCATCTTCTGGTCAGAGATAGATTACAGCATGGAGATCACGATGTCGGAGGACCTGTTTTCCCACACCCTATTGCTCCACGTTGGTGGAGGGGCCCAGTGAGTGTCTGCCAGCCCATCAATCGGTCCTCTTGTATCGTTGGCCCCGTGTTTTGGGTTGTGGACATCTtccaggctctggagagggaacCTGCTCCTGCCCTCTAGAGCGAATTTACATACACATAGGGTCAGAGACCGGTTGCTGACCTGGGCGCACACATCCCTCGCCACTGGACACCCGCACCACTCAATCCCTTTCTGAGAAATACTAGGGGCCTACTTTGGCAAAGAACGTTGCTCACTGTAAACTAATTTTCAGTACATACTGAATCAACATTTTCCCGGTAGgctccagcaggtaaactccTTCCTGTGCCTCAGCATCCCTGGTCTCATCTGTCCATTGATTTCGTCACTGATCTCCCCTCGGATGGTTTCACCACCATTTGGTGGCTGTGGACAGATTCTCAAAATCATGCAGTTTCATTCCCCTCTCTGGTCTCCCTACCACTCCAAGTTGCGGAGGCACTGTTCCAGCAGGTCTTCCATCAATACGGCCTTCCAGAGGATAACGTCAGGGTCAAGGTTAGTCTCACTTTCGGGGTACTGGCCTCAATCTAATtggcaggtggagaggatgacccaggagctggggaggtttCTGAGGAGTCACTGCCAGGTCCGGCAGGGCCGATTCCTTCCTTGGGCTGAATACGTCCAGAATTCATTGCGACACTCCTCCACCGGGCtgactcccttccagtgtgttctgggttaCCAGCCGGCCCTGGATCCTCACCAGACTGACACTCCTCCTCCGGGCtgactcccttccagtgtgttctgggttatcaGCCGGCCCTGTATCCTCACCAGACTGACACTCCTCCACCGGGCTGACTCCCTTCCAGTGTATTCTAGGTTATCAGCCGGCCCTGTATCCTCACCAGACTGACACTCCTCCACCGGGCTGACTCCCTTCCAGTGTATTCTAGGTTATCAGCCGGCCCTGAATCCTCACCAGACCGACACTCCTCCATCGGGCtgactcccttccagtgtgttctgggttatcaGCCGACCCTGAATCCGCACCAGACCGACGCTCCTGCAGTGGATGAGTGGTTCAGGTGCGCAGAGGTATGGAATGATGCTCACCTGAGACTCCAGCGCACCGTCTGAAAGAGCAGACGGATCGTTACCGAAGTGGGGCTCCTGTGTTCCATCCTGGTGACCACATCGCTCTCCACCAGGAACCTCCCACTCCAACTTCCCTgccggtggttcctggtcccctggcTGATGCCGTCCCCCAcgacacccctccctctcccttggaCATTGAGGGGAGCCCCGCCTATGCTGTGAGATTACTCCTAGACTCCCGACGTCTTGGGGGTCTGCTCCAGTACCTAGCGGACTGAAAGGGGTACATTCCAGAAGAgcgatgctgggttccggtggacgACGTTTTAGATCCCGACGTTATCTGAGAGTTCCACCTTCGCCGATCGGTCTGCTCCTTGTCCTCGGGAGCCGTCCTCCTGGCTGGCGTTGTCCTGCAAGTTGGAGCTGCGTTCtctggggggggtactgtcacgtctactccaGCGCTCAACGTCGTTGGTCTACTAACCACCGTTCCTGGCAAcctatcattacgcacacctgcgcccCATCATGaggctcacctggactccatcactaccCTGATTACTCCCCCTTTATTTAGCACTCCCCAACATCAATCTTCAGGCAATAttggttatcaaatcaaatcaaatttatttgtcacatacacatggttagcagatgttaatgcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatatag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051510.1 True 3303 mRNA 0.54 3 32839445 32844732

Neighbor

gene id symbol gene type direction distance location
LOC110521494 LOC106573457 coding downstream 55466 32761197 ~ 32783979 (-)
LOC110532201 LOC106573459 coding downstream 104996 32530266 ~ 32734449 (-)
LOC110521272 LOC106597893 coding downstream 338610 32485245 ~ 32500835 (-)
LOC110521397 LOC106573476 coding downstream 382245 32450847 ~ 32457200 (-)
LOC110521450 NA coding downstream 414196 32423864 ~ 32425249 (-)
grm3 LOC106573453 coding upstream 30184 32867631 ~ 32924599 (-)
lrrc4.2 LOC106573446 coding upstream 880117 33724849 ~ 33729966 (-)
rbm28 rbm28 coding upstream 1100102 33944834 ~ 33953935 (-)
LOC118966666 LOC106573442 coding upstream 1114596 33959328 ~ 33962096 (-)
LOC110521614 LOC106573524 coding upstream 1138645 33983377 ~ 34002282 (-)
G34457 NA non-coding downstream 3330 32835246 ~ 32836115 (-)
G34458 NA non-coding downstream 4261 32834667 ~ 32835184 (-)
G34424 NA non-coding downstream 33319 32778661 ~ 32806126 (-)
G34409 NA non-coding downstream 73776 32763255 ~ 32765669 (-)
G34348 NA non-coding downstream 78671 32760172 ~ 32760774 (-)
G34484 NA non-coding upstream 57654 32902386 ~ 32902678 (-)
G34510 NA non-coding upstream 108891 32953623 ~ 32953861 (-)
G35052 LOC106573452 non-coding upstream 206567 33051299 ~ 33059262 (-)
G35177 LOC106573451 non-coding upstream 392432 33237164 ~ 33239834 (-)
G33386 NA other downstream 853295 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 1394496 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1706554 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3558745 29280276 ~ 29280700 (-)
G29355 NA other downstream 4135089 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 262387 33107119 ~ 33108497 (-)
G35299 NA other upstream 597636 33442368 ~ 33452413 (-)
G35628 NA other upstream 1022826 33867558 ~ 33868045 (-)
G36141 NA other upstream 1432968 34277700 ~ 34362736 (-)
G36196 NA other upstream 1496830 34341562 ~ 34381232 (-)

Expression


Co-expression Network