si:ch211-233h19.2 (LOC106573455)


Basic Information

Item Value
gene id si:ch211-233h19.2
gene name LOC106573455
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32844181 ~ 32867560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599112.2
GGGCATTCCTAGTGCCATGATCAAGCTGCGTCAACCATGAAAGAGAAAATCAGCATACAGTTAAACAAATGATAGTGTCGCAACACGAGGAAACCAGAGTTTCCTCATTTTTTTATTAGGAGTTGGAGGGccattgaaatatatattttttatattcgGAAGCTCGTATTTCCGACATATCATGAACGCTGTTTCATCGTAATAATGACTCTTCTACCGCTTGCATTTATCAGACCACCGACGTCACCGTCGCGTCAAACACCGGTAGATGCGAATTGCAAACGTACAACCAGAATCTCAAACCCATCGGTCGCAGGTTCCTATTATGCCTTCCCGGTCTTGGTTTATCGCTGGtagcgctctcctcctctcttttcggCTGGCATTCGGGACGAAGGGACCACATCCATGCACAGAGACAGACTACTACTATGAATATACAGAGTGTGACAGTACAGGGTCGCGATGGCGAGTAGCAATCCCTCAGAGCCATGGATCCTGCATCGGACTGCCCGAGCCTGTACGAGGGACAGAGTGCAcaTTTTCCTGTGAGGCGGGGGAGTTTCTGGAGATGTCTGCCCAGGAGTGTACTCAGTGTGCAGCAGGTACCTACTCTCTGGGCAGCGGTATTCGATTTGATGACTGGGAAACCATCCCCAGCGGGTTCAGCTccctagcaacttaccttgacaATGGTCCCCATGGAGACGACAGCAGTACCTGCAACAGttcgACGTGGTTTCCGCAGGGTAGTTACCTGGAGTCTAACAGAGATGAGTGTACTGTCTCTCTGATCTATGCTGTCCATCTGAAGAAACCGGGATCAGTCTCCTTTGACTACCAGTACCCAGACGGCAACCTCTTCTTTGAGTTCTTTATCCAGAATGACCAGTGTCAGGAGATGGACCAGACTGCTGATAAGAAGTGGCTCAAGCTTACCAGTCACGGGGAGTGGGCCACACACACTGTGAATCTGAAGTCTGGCACTAACATCTTGTACTGGAGGACAGCAGGGATCCTGATTGGAGCTAAAGTAGTCAAACCTGTTCTGCTGAAGAACGTCCACATAGAGGGAGTGGCGTATGCGTCAGAGTGTTTCCCGTGTAAACCAGGGACGTTCAGCCAAACCCCAGGCTCCTCCTCATGTCAGCCCTGTCCCAGAGACACCCACTCTGGCCACGGAGCCAGCTCCTGTACCCCCTGCAACACCACAACACTCTATGCACcgGAGGGGTCAGCTGAGTGCAAAGCGAGACCACCATGCTCCAAGAAGGATTACTTTCAGATCCACACCCCCTGTGACCTTGAGGGCAAGACACAGGTGACCTACAGGTGGGTGGAGCCTCAGATCTGTCTGGTGGACGTGGCCGGGGCTGAAACACTGCCCCCCTCTGGTGACCGTGAGCCCTGCCCACCGTGCAACCCTGGTTTCTATAACAACGACACTGCTACCTGCTCTCCCTGCCCCCCCGGGACATTCTCTGATGGGGTCAAAGCGTGTGAGTCGTGTCCTGCGGGTACTGAGCCTGCTGTAGGTTATCAGTATAAGTGGTGGAACGTCCTTCCAGCCAGCATGAAGACATCCTGCTTCAATGTGGGCAACTCCAAGTGTGACGGCATGAATGGTTGGGAGGTGGCGGGGGATCATATCCGTAGTGGAGCAGGGGGCTCTGATAACGACTACCTCATCCTCAACCTCCATGTACCTGGCTTTAAgccTCCTACATCAGCAACAGGTGGTGCGGGGACAGAGTTTGGCCGTATCAGCTTTGAGTttgagatggtgtgttcagctgacTGTGAGCTGTACTTTATGATGGATGTAAACAGGAAGAGTACAAGGGTGGTGGCGTCATGGGAGGGCAGTAAGGTCAGACAGTCCTACACACACATTATGACCAAGAACGCCTCTGTGTCATACACCTGGGCCTTCCAGAGGACCAACCAGGCCTCTGacgtGCGTCAGAATGTGAACAACGTGGCAAGTATCTACTCCATCTCAGTGAGTAATGCTGTAGACGGTGTGTCGTCGGAGTGTCAGACCTGTGCCCTCCTCTCCCAGCCCTCCGGCTCGCTGTGTGtgccctgccctccaggacattacATACACACCAGCCAGTGCACCGAGTGCCCTCCCAACACACACCTCACCTCACACAGCACCCTGGGCCCAGAGGCCTGCAAACCCTGTGGACCATCCAGCAAGAGCAACAAGgaGCACAGCAGGTGCTACAGTGACTGTGTATTCTCCTACTCTGAGAACAACGTGTCTCTGAGTTTTGACTACAGTTCCCTGGGCTCTGTTGGAACACTGATGAACGGACCCAGTTTTACCACCAAAGGAACCAAATACTACCACCTTTTCAACATCAGCCTCTGTGGaggagagGGTAGAAGGGCTGTGTGTACAGACAACGTGACTGACCTTTCCAGCGCCGATTctcagaaagagacaggggaacCAGCCAATGCGGTGGAGACATTAATCTGTCAATCAACCATTATCCCCTCCAGTGGGCGGGGCTTCCACACAGCACTATCCTCTCAGTCCATCAGCCTAGCAGACACCTTTCTGGGAGCGACAGTGGCCTTGACTCTGGATGGAGTCAAGGCAAGACCAGACCTGTTCCCACAGACCACCAACAAAGTCCCTGACGTCAACTTCTTCTACCGTTCTCTGGAGGTGACCTCGTCATGTGATAAAGGTCGTAACGTGGTGGTGACGCTTCGCTGTAACCCGGATAGAGGCACACAAGGAGAACTCACAGTACCCAGTCAGTGTCCGGCGGGGACGTGTGATGGCTGTACCTTCCACTTCCTGTGGGAGAGCTCAGGGGCGTGTCCTCAGTGCACATCCACAAACTACCACCAGATAGAGGGAGCCTGCAAGGGAGGACTACAGgaCACTCTGTATGTGTGGACTGAGCCAAAGCGGTGTGTAGGAGGGGTGTCCCTCCCGGAGAAGAAGACCTGGCCGTGTGAGAGCATGGACTTCTTGGTAAAGATGGGGGCGACGATAGGCGCCTTCACCGCCGCACTGCTTTTCTCCATCACCTGCTATTTCTGGAAGAAGAACAAGAGGCTGGAGTTTAAGTACTCGAAGCTGGTAATGTCGTCCAATAAGGAGTGTGAACTGCCGGGGGCGGATAGCTGTGccgtgatggagggagaggagaatgagggagagatggaggatgaggTGGTCTACTCCAAAAAAACATCCCTGATACGCAAACTCAAAGCCATCGCATCTAGGGGAAACGGGAGAAGCTATGAAAATGTCCAGTTGAACTCCTCACAGTCAAACGGGTTGGTGTGGGGGTgaagaaagaggaaagagaacaaggagagagacCAACCACCCCCCCAGAGAGACTTCTTCAACATATCTCCATGTTGAGGGCTTGAAcccttaacacacacactcagaacatATATAGACACATGCAGAGTACACACACCCAGAATGCATGCTCACTGACACAAACACATGTGAGAGGACATTACCCCCATCTGGCCTTATCCctggaatggtgtgtgtgtgtgggtggattgCTGGAATATGGGTGGTGTGATTTTAAAAGGGTGTATATGGGTGGTGTGTCGGGTCTGCTTAGGTAAAGAAGAGGACCTATATGTGGGATGTTTTTTGTGCTGTTTTCCGTCACTCTGTTGTCAGGTTGCTTTGGTGGCCATGTTGTTTTCCCTCAGGTGTTTTGTCCTCTGAGACCAACCTCACATCAATCCTTAGGCTCCTTCTCAATAAGAGGGAAGATACGGTGTTCCATAGTGCCCTCTGAAAGGCTGGGTGGGATCTTTGCATGTTGGCACCTGTCCAATCCTTTGAGATCTACAGAAGTCCACACATAGCCCTAAATACccggcacacactcacacacacaccctattacAGTCTCATCTTAGTCTGACCTGCACCACCCTTTACCCATTTGTTCTGTCTGTAGGCTTTGGGTTACCATGGTGATGGTGGAATGTCCTTCACGCTCTCTTAGTCCAATCGGGAGTGGCGATGTTACATTATCCATATGATGATACGATATGATGCTGACTGCCTTTCTGTTAtttaaagtgaaataaactatatTGTATTTGTGTA

Function

NR:

description
UPF0577 protein KIAA1324-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599112.2 True 4117 mRNA 0.52 23 32844181 32867560
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521475 LOC106573462 coding upstream 90421 32751446 ~ 32753760 (+)
LOC110521454 LOC106573411 coding upstream 93156 32733519 ~ 32751025 (+)
si:dkey-30c15.13 LOC106573478 coding upstream 358715 32481462 ~ 32485466 (+)
terb1 LOC106573465 coding upstream 397303 32436906 ~ 32446878 (+)
si:dkey-30c15.2 LOC106573475 coding upstream 483283 32353368 ~ 32360898 (+)
sema3d LOC106573452 coding downstream 169551 33037111 ~ 33108578 (+)
LOC110521527 LOC106573451 coding downstream 348798 33216358 ~ 33245765 (+)
sema3e LOC106573450 coding downstream 400964 33268524 ~ 33326523 (+)
LOC118964465 LOC106573449 coding downstream 503908 33371468 ~ 33402776 (+)
LOC110532225 LOC106573449 coding downstream 553958 33421518 ~ 33481364 (+)
G33905 NA non-coding upstream 7028 32836548 ~ 32837153 (+)
G33859 NA non-coding upstream 83488 32760109 ~ 32760693 (+)
G33858 NA non-coding upstream 84366 32759591 ~ 32759815 (+)
G33852 NA non-coding upstream 109673 32733938 ~ 32734508 (+)
G33841 NA non-coding upstream 126835 32717141 ~ 32717346 (+)
G33955 NA non-coding downstream 68009 32935569 ~ 32935897 (+)
G33961 NA non-coding downstream 82512 32950072 ~ 32950289 (+)
G33964 NA non-coding downstream 86682 32954242 ~ 32954464 (+)
G33768 NA other upstream 226497 32613073 ~ 32617684 (+)
G33681 LOC106573476 other upstream 391796 32450854 ~ 32452385 (+)
G33284 NA other upstream 882634 31956530 ~ 31961547 (+)
G33249 NA other upstream 993212 31850473 ~ 31850969 (+)
mef2aa mef2a other upstream 3590963 29188958 ~ 29316547 (+)
G34963 NA other downstream 834217 33701777 ~ 33703462 (+)
G35699 NA other downstream 1090537 33958097 ~ 33958681 (+)
G35700 NA other downstream 1092500 33960060 ~ 33960447 (+)

Expression

si:ch211-233h19.2(LOC106573455) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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si:ch211-233h19.2(LOC106573455) Expression in each Bioproject

Bar chart with 21 bars.
si:ch211-233h19.2(LOC106573455) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network