sema3d (LOC106573452)


Basic Information

Item Value
gene id sema3d
gene name LOC106573452
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33037111 ~ 33108578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976064.1
atccctctatccatccagcATGCGCAATTGGAGTGCACAGAGAGTTCATCTCTGTGGCGGAGACTACCGAGCGTGCGTCAAACCGCTCAGAGTTTAATAAAAAGGAAGGGCGGGGAAATATCGGGGCAATTTAGTTTGTGCGACTTTTATTGCTGCTGTGATATAACCCAGCTAGCCCTTTGACTGTTTTATTGTTTGGAGAGAGCAGTGCGCGTCAATGAAAGGTTTAGGGAAAGTTGTTGCTGAGTTGTGTGTGAGTTCTTAACAGCGCTCCTGGCTCGTCTGCTCCTGTCATCATTACGCACGGGAGGAATCCCGCTCCAGGAGAGACAACACAACGTTGAGAACAGGACTGTTGAGAAACAGTAGTGGAACAGAGAAGAAAACATTCACTTTCGCATCATGAAGACTGGAGGGACTGAGTGTGAGCCTGTTGAGAGACTGTCCTGGGGCTTTACTGGAGGTCAAGGGAGGATTAGGCTGTCTCTAGCCCACCCAGGGCTGCTGCTTCTGGGGATGGTACTGCTGGTCCTCCTGCCTTCTGGAGAAAGTGTCAAACAGAGTGTCCCCAGAGTCCAACTCAGCTACAAAGagctggTCCAGAGTGGTAGTGTATCAGTGTTCCTGAGTCCTACTGATGGTCTCCATTCCCACTCTGTGTTGTTggatgaggagagaggcaggctgctGCTGGGAACCAGAGATTCAGTTTACCTACTGGACCCTGACCACCTCAGTAGAGCCCCCAGGAAGATCAGCTGGCCAGCCCCCAGAGACAGAGTTGAGATGTGTAAACTGGCCGGCAAGAGTGCTCATTTGGAGTGTGGCAATTTTGTGCGTGTGCTCCACAACTATAACCACACCCATCTGTACGCCTGTGGGACAGGAGCCTTCCACCCCATTTGTGCCTTCATTGAGATCTCAGGACGCAGAGAGGAGGGTGTGTTCCAGTTGTTGTCCGGTACAGTGGAGTCTGGGAGGCTGAAATGTCCTTACGACCCCAGGCAACCTTTCACCTCTGTACTCACAGATCAATTCCTGTATGCGGGCACAGCATCAGACTTCCTGGGTAAAGACACAACTTTCACCCGCTCCCTGGGCCCGCCCCCTGACCAGCACTATATACGCACTGAGATCTCAGAGGACTACTGGAtcaatgAGGCCAGGTTTATATCAGCTCACCCTGTGTCCGACACCTACAACCCTGACGATGACAAGATCTACTTCTTTTTCCGAGAGTCATCACGGGACAGGAGCGATAAGAGTGTCCTGTCCCGCGTAGCACGCGTCTGCAAGaATGACGTGGGAGGGTTGAGGAGTCTGACCAATAAGTGGACGACGTTCCTCAAAGCCAGACTGGTGTGTTCCATCCCTGGACCCGAAGGAGTGGACACACACTTTGACGAGCTCCAGGACATATTCATGCTTCCCTCTAGAGATGAGAAGAACCCTGTAGTGTATGGAATCTTCACCACCTCCAGCTCTGTGTTCCGTGGCTCGgcggtgtgtgtgtacagcatggCTGACATACGAGCTGTGTTCAACGGACCCTACGCTCACAAGGAGGGACCTGACCATCGCTGGGTAGAATATGAGGGGAGAATACCTTACCCTCGCCCTGGAACGTGTCCCAGTAAGACATATGACCCCAGGATAAAAACCACCAAGGACTTCTCAGACGAGGTGGTCAGCTTCATCCGCTTCCACCCACTCATGTTCCGCTCTGTCTACCCCCTGACCGGTCGGCCCGTGTTCACACGTGTACGTGTCGACTACGCACTGACACAGATAGTGGTGGACCGCGTCATGGCTGAGGATGGACAGTATGAAATCATGTTTCTGGGTACAGatgctGGGTCTGTGCTGAAGGTTGTGAGCATCACTCAGGAGAACTGGTCCACTGAGGAGGTGATTTTGGAGGAACTCCAGGTGTTCCAGACACCCACTCCAATCCTGAGTATGGAGATCTCTTCTAAACAGCAACAGCTATACGTGGGTTCGGGGGCGGGGCTAGCCCAGGTGTCACTGAGCAGATGTCACCTGTATGGTCAGGTGTGTGCAGAGTGCTGCCTTGCCAGAGACCCCTACTGTGCCTGGGACGGACACACCTGCTCACGGTACATCCCTGCATCCAAGAGGAGAGCTAGGAGACAAGACATTAAACATGGAGACCCATCCAGCCAGTGTTGGGACACAGATGACACTCTGCGTGGAGGCAGGGTGGAAGAGAGGATCATGTTTGGGGTGGAGAATAACTCAACCTTCCTGGAGTGTCTCCCCAAATCACAACAGGCCACAATACGCTGGTTCATACACAGACCTGGAGCTGaacacagagaggaggtgAGGCCAGATGACAGAGTGGTCCTTACAGACCGTGGTTTTCTCATCCGCTCTCTCCATCCTGCCGACGctggcgtgtatgtgtgtgtggcacaGGAACACACTCACTTCACACACACTTTGCTCCGCCTTACACTTCGTCTCATTCCCTACGGGCATCTGGATGGGCGGACCAAGCCCAGCGAGGACCCCAGCGTCGAAGTTCGCCCCGGGGCTGAGTCTCGTCAGCGCTATAAGGATTATCTGCGTGTGATGAGTTCTCCCATTGGCTCGCTGGAGGACTACTGTGATTCGCTGTGGCTGGAAAAGAGGCCGGCCaataggagaggggggagagggcaaGGAGCAGGAAAATGGAAACACATCCAGGAGTTGAAGAAGAGCAGGAACAGACGACACCATGGAGAGAGGGGTgcagagagggataaagagaaggATGGCGAGAGGGTAGGGCAGTGGAGGAGTGGATGAAGTGGTGAGGGTAACAAAGAGGAGGAGTTGCTACTGAAACAGCAGTAGCCAAAAGTGTAATCAGTCAAAATATTAGGGGAGACCATCAATGTTTATAGGTGTAAGAGGGGACAATAGGGAAGATGATCATGTTTAGTTGAGGGACAGTTATAACGACATGGGAACTGGGATCCTGCAGTTGATAGTATGGACCACGATAGACTCTTCTTACAGAGGTATAATCTTCTTTCATACCAGTCAAACACTCATAGGGCTCATGTAGGCCTGGCTTCTCAAACTACACTACCCATGATCCCTATGGCTGTGTCTCAATAGTGTCTCAGTGCCTTTACTGACGTATCAAAGTAACCTTGTTTAAGAGGGGCTGCAGCCAATGTCAAAAGTTATTTTAAATTCCAGAGAAAGTTTAGAACTTGAATTTGGGACTTTGGAGAGTGTTTAGAATCATTATGTTTTGATCGTAGTACATGTCAACGATGTAGTTGTACATTTAAGGGGAACATCACTGCAATCACTTTGCCTTAGTTGTCAAACTGATATTGGCTACACTTGCTACAAACAACTTTTTTGACAATTTTAACTACCGCCCTTGCAAGTTAGCAAGCATTAACTAACTAAGCTGGCTTTCGGTGTGGGGGTAGGTTTGTTCAAAGTCTAAGGTCACAGTGAGAGTGTGACATGGCCTTGACATTAGCTGCATCCCTTCTAGCTATAACTCCATTTTAGCCGAATGAGACGTGCCCAGAGCTCAGTGTTTTGTGTCTTAATCAGATGCATTCATGTTGAATGACTGTAAATACTTCTATAACATGTACAGGAGAAACTGCATGCTCTAGTTCAGCTTAGATAGGACATATTATACTGCTACTATGATAATCACATATTATGTCTAGAATGAACATAGAATCATATTTTTGTACAAAGTGAATGTTTCTCTTTTTGTAGGTAGATTTATTTTGGTAGAGTCTGAAAGTTCTGTAAATAAACTATTGTCTTA
>TU39126
gggtatggttctcaatcagggacagcggtctatcattgtctctgattgggaaccatatttagggaggtTTTGCCCACAtcggttttgtgggtagttgttttctgtatggTTTAGtttccttacagaactgttcatttACCTCTATGTTCTTTTTGTTCAAGTGTTCTGATTTaataaaatatcatgaacacgtaccatgctgcgctttggtccagtcATTTACAGAAAGAGGATCGCTACAGCGTTGGGAcgataaccgaaaggttgctggatcaaatccccgagctgacaacgtagaaatctgtcgttatgcccctgagcaagacagttaacccactgttccccgtgcGCCAAAgacatggatgttgattaaggcagcacctctctgattcagaggggttgggttaaatacggacgacacatttcagttgaaggcattcagtatAACTGTCTAGGTATTCCCCTTTCCCTATTGTATTCAGTGTGTTATCCGTTTGTGGCTGTCAGTATGTTGGGTTCAGTGTGTTGTCCATATTTGGTTGTTGTCAGTATGTTAGACATATTTAACAGGGTTATCAGGACAGACAGATCAGCTTAAATCCTAGCCTGAAGTAACTCCTGTTACCTGTAATACAAACTCaggacatacatacacacacacgccataGGAACCATTTTGTGTGTGCGTTTGAAAGAGTAAAATGTTGCCCCTGGTCTTGCTGTAGGCTAACTACTATGAACTCGCCTCACACTGAAGAATGTATGTATGGAGCCAAATATTGTCTTGACAGCAGGACGTGACCTTATTACCTTTATTGACCTTTCACCCCTGACcctgtggcgtgtgtgtgtgttttatgtatgcGTTTTGGGTTGACAGGAGAGCTAGGAGACAAGACATTAAACATGGAGACCCATCCAGCCAGTGTTGGGACACAGATGACACTCTGCGTGGAGGCAGGGTGGAAGAGAGGATCATGTTTGGGGTGGAGAATAACTCAACCTTCCTGGAGTGTCTCCCCAAATCACAACAGGCCACAATACGCTGGTTCATACACAGACCTGGAGCTGaacacagagaggaggtgag

Function

NR:

description
PREDICTED: semaphorin-3D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976064.1 False 3811 mRNA 0.50 18 33037111 33108578
TU39126 True 1090 lncRNA 0.45 2 33086458 33087678

Neighbor

gene id symbol gene type direction distance location
si:ch211-233h19.2 LOC106573455 coding upstream 169551 32844181 ~ 32867560 (+)
LOC110521475 LOC106573462 coding upstream 283351 32751446 ~ 32753760 (+)
LOC110521454 LOC106573411 coding upstream 286086 32733519 ~ 32751025 (+)
si:dkey-30c15.13 LOC106573478 coding upstream 551645 32481462 ~ 32485466 (+)
terb1 LOC106573465 coding upstream 590233 32436906 ~ 32446878 (+)
LOC110521527 LOC106573451 coding downstream 107780 33216358 ~ 33245765 (+)
sema3e LOC106573450 coding downstream 159946 33268524 ~ 33326523 (+)
LOC118964465 LOC106573449 coding downstream 262890 33371468 ~ 33402776 (+)
LOC110532225 LOC106573449 coding downstream 312940 33421518 ~ 33481364 (+)
LOC110521560 LOC106573448 coding downstream 390083 33498661 ~ 33521668 (+)
G33964 NA non-coding upstream 82647 32954242 ~ 32954464 (+)
G33961 NA non-coding upstream 86822 32950072 ~ 32950289 (+)
G33955 NA non-coding upstream 101214 32935569 ~ 32935897 (+)
G33905 NA non-coding upstream 199958 32836548 ~ 32837153 (+)
G33859 NA non-coding upstream 276418 32760109 ~ 32760693 (+)
G34825 NA non-coding downstream 374315 33482893 ~ 33483211 (+)
G34877 NA non-coding downstream 445645 33554223 ~ 33554469 (+)
G34879 NA non-coding downstream 451621 33560199 ~ 33560418 (+)
G35631 NA non-coding downstream 763633 33872211 ~ 33872428 (+)
G33768 NA other upstream 419427 32613073 ~ 32617684 (+)
G33681 LOC106573476 other upstream 584726 32450854 ~ 32452385 (+)
G33284 NA other upstream 1075564 31956530 ~ 31961547 (+)
G33249 NA other upstream 1186142 31850473 ~ 31850969 (+)
mef2aa mef2a other upstream 3783893 29188958 ~ 29316547 (+)
G34963 NA other downstream 593199 33701777 ~ 33703462 (+)
G35699 NA other downstream 849519 33958097 ~ 33958681 (+)
G35700 NA other downstream 851482 33960060 ~ 33960447 (+)

Expression


Co-expression Network