LOC110521571 (LOC106573447)


Basic Information

Item Value
gene id LOC110521571
gene name LOC106573447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33622869 ~ 33649767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599209.2
gagagagagagaggtccacaCGGTGTGTTTCTACTCAGAGGCATCTCTGCTGTAGCTGAGTGAAAATCCCCAGTCTCTTCGTACCGTCGTCTGGACTTTATCAACAGACGGCAATACCTTTACTATTATTGGGATATCATATAGGTAATAGTTTGGATATCGTGAACAGCCTTTGAAACAACCATGTGGATTTACAACATTATTTTTATGCTCTTAATTGTCCACTATTCTGaGTGCAGGAGGAATGCATTGCAGGACTACCAGAGAAGCGATAGTGTGCGATTGGTCCAGCTACCAGACTCTGCCCTCCAGACTATAAGCAGGAAGTTGAGCGTAGTGAAGTGTGCCCGGGGCTGCAGCCGCAACAAGCGACTACTCTTCACCTGCAGagCATTTCTGTACGATCAGAAAAACAGGAAATGCCAGTGGCTTTCATTCGACAGGAACTCACCAGGAGTCCATAGCCAACACGACTTCAACTACCAACTCTACCAGAAGAAATcctatGTGCAGGAGTGCATAGTAGGGACAGGAGTGAACTacagagggaggaggtcagtAACAGCCAGTGGAATAAAGTGCCAGGCATGGGCCTCTCCTATCCCTCACGAACACAATTTCCTACCAAGGAGGAACAGGAAGAAGGACCTGAGAGAGAACTACTGTCGTAACCCTGACAATGCTACCTCAGGACCATGGTGTTTCACTACAGACCCCAATGTCAGACACCAGGACTGTGGAGTACCTCAATGCTCACAAGTGGAGTGTGTGAGCTGTAACGGGGAGAGCTACAGAGGTCCCATGGATCACACAGAGACAGGATGGGAGTGTCAGCGCTGGGACCTGGAGGAACCACACAAACACCTCTTCCACCCcaagagGTATCCTGATAAAGGCCTGGTTGATAACTACTGTAGGAACCCAGATGGACGTCAACGACCGTGGTGTTTCACCACGaacccacacacactctgggagTACTGCAACATCACAGCCtgctccacagacagtgtggtagagTTGGAAGTGACTACTATGTGTTTCTGGGGTCAAGGTGAGGGCTACAGAGGGTCAGTAGCAGTAACACCCAGTGGGGTGATCTGTCAACGCTGGGACTCACAGTACCCCCACAACCACTCATACGTTCCCCAGAACTACCGCTGCAAagaccTGAGGGAGAACAACTGCAGGAACCCAGATGGACGTGACCTCCCATGGTGCTTCACTTCAGACCCTAACGTTCGCACAGCGTTCTGCACTAACATCCCCCGCTGTGGCAAACAGAACGCTGAACCTCAAGACTGCTACACGGGTAGTGGAGAGAACTACAGAGGCGAGGTTTCCAGGACTAGGTCAGGTCTTCCCTGTTCCCTCTGGAGTGACCACAGCAACAGTGGTGACAGAGATGCAGCGGTGCTGACTGTCAGACAGGAGGGGAGTTTCTGTAGGAACCCAGACAGAGATACATACGGCCCCTGGTGTTACACTAACAGCACTGCTGTACCATGGGACTACTGCAGCATCAAACTATGTGAATCATCAGAGAACACCATTCCACAGAGAGTGGAGGTGTCCAAGGTGTTGTGTTTCATCCATAAGAGGACCAGGATAGTAGGAGGAGCTCCAATTGCCATTACAGACGGAAGCTGGATGGTCAGCATACAGAAAGGGTCCAATCACTGGTGTGGAGGTTCTCTTATACGGGAGGAGTGGGTTCTCACTGACAGACAGTGTTTCTCCTCATGTGTTCCAGACCTGAGTGAGTACCGTGTTTGGTTGGGTGTGTCAGACATCCGTGGCTCGGCTCCTAATGGCTCCTTCAGACAGGAAGTCTCCATCTCCCATGTGGTCTGTGGTCCTGAGGGCTCCAACCTGGCCCTCATACGGCTGGCCAAGCCTGCCCTCCCTGCCGACAGTGTTCACACCATTCAGCTGCCGGTGGCTGGGTGCTCTATTGCTGAGGGTACGATGTGTAGCATGTATGGATGGGGCGAAACcaaagGGACGGGTCATGAGGGTGTTCTGAAGGTGGTCCATCTGCCCATGGTCAGTAATGAGAGATGTAGAGAACAACACAGAGGGAACCTCCACATCACAGACACCAAGATCTGCGCTggggggaggagggatgagggggtCTGTGAGAGGGACTATGGCGGCCCCTTGGTGTgccaggaaggagagagcagggtcATAGTGGGAGTCAGTGTCCATGGCAGAGGCTGTGCCCGTGCCAACCGCCCTGGCATCTTCATCAACATCCCGTTCTACACACAGTGGATCCACAAGGTGTTCAGACACTACCCTGAACCTCAGATCAACTAGAGACAAACTTTTATCCCATCATCAACTAGAGACCCAACCTTGAGACATCCTACAACCAGTGGATCCATAAGATCTTCAGACACTATCCTGACCCTTACCCTGATCTGACCAACCAGAACCACCTTGATATAGATACGTGTAAGTCCAGTAAGGAACAGCTGAGTCCTTGTGCATTTGAAAGGGGGGAAAATCCAGCTGTATTGTAAATAGCAGACGCAACTCCAGACTTGATGTTGGACTGCTAAAAGACTCATCATGGGCTGTGGAGTGGAACATAATTGTGTTGATAAGACTGCTGGATTGATCTTTAGATAATATAAATATGCATTGTTACAAACATGCTACTAAGGACAACAGAGGTGTGGATATGTTGTCGGCCAACGACCATGTCCTGAAGCTGGTAAGGTTTGGAGTCAGAAAGACGCTGTAGATAAGATGGTAAAAGTGGGAATACACTTGATTCCGGACGTTACTTGAATGTACTGAAAACCAAAAGGCAGCAGCTCTCTACTTCTGTAGTGTGCTTCTGTAGGGCACTGTCAAGGGAACTAAAATACAgttgggtcgttccaccaatttggccttttgagaagtgtaaaaCATTTAATTTGACCAAATTTTAAAATTCTGCCacaaagagcacatgttcaacttaaaaaataaaacatttccccatctcaagaggttaaataaaaaatgatgatTTCATCTAAAATCAGCCATAAAACCCTTGTGAAAGCGGGATGGAAGCGTCAATTGAATGCCAGCTTcacaaaatgttttaaattgttaaaacatttctagcctgtctatctatgggtaacagggttgacatgttatgcTTGACcggctcagttttccaccacaaaacaccagaaaatggccaaaaagagtagaaccagctcacctgcttttacactgtgatttgactattagatgttcaatgtttcttttgttTAATATATTTatgtaggaatagtttcaccatattcaaATTAGAGTTCAATTCACATAACAGGTTAGACCTCAAAATGAAATGGTAAATGAATCACAAATTACATGAAATAAATTACTTTACAAAGCAACacaaataactagggctttacaatgatggtgaaaacatGGAGAAATGTGGTTAAGGGGGTTAAAATcatcctagaagtcacagagggttCATGAAAAAACATGTAAAAAGGCAGACTTTATCAAGTCTTTATTCCTATAAAAATCTGATATAGTGAATATATTGAcatattgaattctccatgtggtctgtattaaagggcacttcatttaattgGTGCACCATTTCTACTTTAATTTCAAAGGGAAGCGAAAGGCTCTCTTTTCGTGGAACAACCCAGATCTGTACATCTGAGGGCATTTTACTGTACTATGCCTATACGTGTCTCAGTGTAAATAGTTTTCTGAGTGTAAATCTGACAGGCTGAATGTGATATGGGTCTTATAGACCTGTGAGAGGATGGGGACGTTGGCCTTTTTAGGAACACGGAAAGATCAACATGAAGCCGTTGAAGGTAAATAAATGTATgtgtaaatatgttttatttctgTGTATGTATTGTAAAGGTGAAAGGGTATGCAGCTACAAGGCTTTCCAGTTTCCActgaccctctccctctcttttctatcAATTTTAACTCTCCTTGTCATctattctccccttctctcttcctgcAGTGATGTATTCTGTTTGATACACACACAATCAGTatgactgattgtgtgtgtgtgtgtttgtatgtgcgtgtgtgtgcgagtgGGTTCTGTGAATTCTATCAGAGTGAGTTATATTCCctcacctccctcagcctctgGCAGACATCCAGTAACTATCTACTCTGGAAATGAATTTTCACAGAATCTGTCACTGCAAACTGTTATCAAAATGGAGCTGTTGGCTACTGTATGTTCAGTGTTATTGTGAGAGTATTAGCCTCTATCTCTATCACACATTGATCTGACTATTTCACCTGTGAATGTGAGTGGTCCCTCAAACAAGTATAGCTTtaattgttttttgtgtgtgtatttgtaaatGTAGTGAAGTTGcattctgtgtctgtgtgtatatgtgaattGTTTATGCTGCTATACAAGGTTGTAAAATATTACATTATATGTACATGTATACTATAGGCTACTGTTCATATATTGTTTTTAATTTGAATACTCCATGTCAATATTACAGTACTATGATACCATGTCAATATTACAGTACTATGATATACCTGTAGTACACCGTGTTCCTATCTTAATGTATCTGTAAGTTAATCATTGAATACTGTTTTAATGTGTTTATATTTTAGTGTTACAGTATATTACGTCATGGTACCATACCCACATACAATGAGTTTGTTCATTTAATTTGCATTAGGGTGTTGTGAGTGCAATCATTAGGCCTTATTTCAATGTTTCAGCGAGAATTTGATGCGTTCATCACCAGGCGTTATAACAGTAGACCTAGGCTTCTAACAGGTGTCTATTCAATTCGATTCAGAAAGCATCCATCAAAGGATGGAAGGAAGATGTATTTGACACGTATCTCACATAGGTCTGTAATGCATATTGAAAACTCCAACACTGACATACATGGGACAAGAAAATAAAAAGGTAGGCGCTAATGTCTATAAAAAAAGAAtggaaatgtatgcactcactactgtaagcaaaataaaataacaataataatggcGCTGGAGGGGAGGACTGCCATTTTACGGACTCCTAAACAACTGTGTTAttttgttttttcgcattgtttgtaactcattttgtacatacTGTTGCttctaccgtctcttatgaccgaaaagagcttctggacatcaaaaTAGCAAtaactcacctcgaactggacaaagatttttcttTAATATGTCCGatgcaaaggatatactgctttgtcaAGAAAAAGCCCAAATCCTTGTCAGTGTGAAGAAAAGAGTAGAAAAAGGGTGAGGAGGGTGGTGTGCCTTGTATAAATTCACAGATgagtaggtaaaccaccactaccctcGGAATTATTGGCCAATGTGctatcattggaaaacaaactaaACAATCTgcgattaagactatcctaccaacgatatattaaaaactgtaatatcttatattTCACCGAGACTTTACTGAACACCGATA

Function

NR:

description
hepatocyte growth factor-like

GO: NA

KEGG:

id description
K05460 HGF; hepatocyte growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599209.2 True 5494 mRNA 0.44 18 33622869 33649767

Neighbor

gene id symbol gene type direction distance location
LOC110521553 LOC106573448 coding upstream 26199 33534145 ~ 33596670 (+)
LOC110521560 LOC106573448 coding upstream 101201 33498661 ~ 33521668 (+)
LOC110532225 LOC106573449 coding upstream 141505 33421518 ~ 33481364 (+)
LOC118964465 LOC106573449 coding upstream 220093 33371468 ~ 33402776 (+)
sema3e LOC106573450 coding upstream 296346 33268524 ~ 33326523 (+)
LOC110521608 LOC106573441 coding downstream 317983 33967750 ~ 33977868 (+)
LOC110521627 LOC106573440 coding downstream 354413 34004180 ~ 34006028 (+)
LOC110521655 LOC106573426 coding downstream 396480 34046247 ~ 34057828 (+)
calub LOC106573432 coding downstream 414604 34064371 ~ 34068111 (+)
LOC118966672 LOC106561218 coding downstream 418886 34068653 ~ 34071754 (+)
G34879 NA non-coding upstream 62451 33560199 ~ 33560418 (+)
G34877 NA non-coding upstream 68400 33554223 ~ 33554469 (+)
G34825 NA non-coding upstream 139658 33482893 ~ 33483211 (+)
sema3d LOC106573452 non-coding upstream 535191 33037111 ~ 33108578 (+)
G35631 NA non-coding downstream 222444 33872211 ~ 33872428 (+)
G35691 NA non-coding downstream 291333 33941100 ~ 33941325 (+)
G35692 NA non-coding downstream 291760 33941527 ~ 33941831 (+)
G35694 NA non-coding downstream 293644 33943411 ~ 33943650 (+)
G35697 NA non-coding downstream 300440 33950207 ~ 33950495 (+)
G33768 NA other upstream 1005185 32613073 ~ 32617684 (+)
G33681 LOC106573476 other upstream 1170484 32450854 ~ 32452385 (+)
G33284 NA other upstream 1661322 31956530 ~ 31961547 (+)
G34963 NA other downstream 52010 33701777 ~ 33703462 (+)
G35699 NA other downstream 308330 33958097 ~ 33958681 (+)
G35700 NA other downstream 310293 33960060 ~ 33960447 (+)
LOC110521835 LOC106573423 other downstream 840353 34490120 ~ 34507419 (+)
LOC110521947 LOC106573413 other downstream 1114404 34763838 ~ 34808250 (+)

Expression


Co-expression Network