lrrc4.2 (LOC106573446)


Basic Information

Item Value
gene id lrrc4.2
gene name LOC106573446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33724849 ~ 33729966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599223.2
TGAAGGACAAAGGGAAAGGGCAGAGACAGTCTTAGCTCctctcaagacacacacacagggaaaaaAGAGAGGCTGTAGAATAAATaacaagaagagaagaggagatggggatTGGAATGCTGCTGATGCTGCGACGGTGTCATGCCTGTGTGCCTGCTTGtgtgcctcctctctctcttccgctctctcactctcccttttgctttccccctctctcgcttCCTATCTCTCTACTCCACAGTGGTTACTGCAGTAGTCCAGCAGCCAGTCGGGAGCTTCTCTGCCACACAGAGAGCTAACTGCCACAACTTGCTACCTCACCTCATACCTACAGCCCTCAGTCCTGAGCTCAGCCCTGGGGATCAACTTGTAGACAaccaggacagacagagggatacgGCAggagacacacacctcaggggaGAGGGCACCAGGCCAGGAGCACCCCATTCCTGGCTCATTTTACGGATAGCAGCTACAGATATATACCCTTCACAGCCACCATCGCATCCACACAACAGGAAtctactcctctctttctctctaaagcGTAGCTCCGGCAGCACTgcgctcccctcctcctccctcctctctaaccagcaccaccaccacacccccccccccacccccccaggaGGAATCGCTGGATTATTGCTAACTATGCTGCACGCGGCAGGCTGCAGCTGCTATAGACACAGCCAGGCAAACCAACGCAGGGAGAGGaccagaagagaagagagaaaaagagagaatagGGGGGTGACTGCATCAGGAGTCCTTTagcttttccctctctctctttctccatccatcAGAGCGGGGCTAATCAGGCACAAGCTAGCCGTCGGCAAAGTCACAGAGACGGAGGGCTCTCTGccgacactcacacacacagaaacaaaggaACACGCTCACATGCACGAGGACCTGCCAAAACGGGGGATTTTTTATGACTTTTATTCTGTAATTTTTTCCCTTCTGCTCAGTGTATCTGGCTTATACTGCGTGATGGAGCAGTTTGATTCGTCAACAGAGGGGGCTGTGTGTCTGCGGCtgcaggcagggagagggggagaggaggggggctggGGGACACCAGGCACCTGCTTAGCTTAACCCACACGGCCTGTCCTTTCCCACCGAGCCTGTAGTCTCTACACGCTGCTCCACTCCGCTCTGCTCCACTCCGCTCTGCTCCACTCTCACCACGGGCTAATAGGAGACATCTTGTTCCATTGGTTAACACAGGGACATTACCACCACATTCCAGAGGAAGGAGAAGAactgaaaataaatatatttttcactTTTCGGATTTTCCATTGAAGTGAACTACACGGCTGTGGTTTGTGATTTTCGTAGTATTCGGAAAGGAAGAAGAAACAGGCCATTTCAGAACTAATGAGcgTCTCCCAGTCCCGTCGATGGCGTGGCGAGCCCTGTCCTTGTTCCAGCCAGGGTAGGAGGGTGGTGTGTCCTCCTCTAGCGTCTGTCTCCCCCCACCATGCTGAAAAAGAGTCCTCCGAACCATGAGTCCTGTGGGCCAGGTTTCTCTGCAGCCCACCTGGAACGCAGCCCTGCTCACCCTGCTAGCCCTCACCATGGTGCCAGCTCTCAGTTTGTACCAGCCTGTCGGCCTGGGTGCTCCCTCTAACCCCCAGAACTGCCCGGCAGTGTGCTCCTGCACCAACCAGCTTGCTAAGGTGGTGTGTACGCGCCGTGGCCTGGTCAGGGTGCCCCCCGGGATCCCCACCAACACCAGGTACCTCAACCTGATGGAGAACAGCATCGAGACCATCCAAGCTGACACCTTCAGACACCTACACCATCTTGAGGTGCTGCAGCTGGGCAGGAACGCCATCAGGCAGATTGAGGTGGGGGCCTTCAATGGCCTGACCAGCCTCAACACCCTGGAGCTGTTTGACAACAGACTGACGGGGATCCCCAGCGGGGCCTTTGAGTACCTGTCCAAGCTGAGGGAGCTGTGGCTGAGGAACAACCCCATCGAGAGCATCCCGTCCTATGCTTTCAACAGGGTGCCCTCTCTGATGAGGCTGGACCTGGGAGAGCTCAGGAGGCTGGATTACATCTCTGACGGGGCATTTGAGGGCCTGCAGAACCTCAAGTACCTGAATCTGGGGATGTGTAACCTTATGGAGATGCCTGTCCTGTCACCCCTGACAGGCCTGGAGGAGCTGGAGATGTCTGAGAACACTTTCCCTGAGATGAAGCCTGGCTCGTTCCGTGGCCTGTGCTCCCTACAGAAACTCTGGATTATGAACTCTGGGATCACCGTGATTGAGAGGAATGCTTTCGATGACATTACGGCGCTGGTGGAGCTGAATCTAGCCCATAATAACCTGTCGTCTCTCCCCCATGACCTCTTTGCCCCGCTGCAGTACCTGGTGGAACTTCATCTCCACCACAACCCCTGGAGGTGTGACTGTGACGTGGTCTGGCTGTCCTGGTGGCTCAGGGAGTACATCCCCACTAACTCCACCTGCTGCGGCCGCTGCCACTCCCCTGCCCACATGAGAGGACGATACCTGGTAGAGGTGGACCAGACCACATTCCAGTGCTCTGCTCCATTCATCCTGGATGCTCCCAGGGACCTCAACATCTCTGCAGAGAGAGTGGCTGAACTCAAGTGTCGTACAGCCTCCATGTCATCGGTCCGATGGCTGCTTCCTAATGGGACCGTTCTGACCCATGGCTCGGCTCACCCTCGGATTTCTGTCCTTAACGACGGAACACTCAACTTCTCCAACGTTCTGCCATCAGACACAGGCGTCTACACCTGCATGGTGACTAATATGGCGGGTAACTCCAATGCCTCGGCCTACCTGAATGTCAGCAATGCAGAACTCAACACCTCCAACCTGTCCTATTTCACTACACTGACTGTGGAGGTGCTGGAGCCCACCGTAGAGGAGATCCCCAAACCCAAACCCACCATCCCAGCCTCGCCCTCTGTGTTCCAGCCCGTCTTCATCTCCACACCCACTGTGTTACTCCAGAACACCCAGACCCCCCGCCAGATATCTCTCCCCACGGCCCGTGGCCCCATCCACCCTCCCCCCAGCCTGGATGAGGTCATGAAGACAACCAAGATCATCATTGGCTGCTTCGTTGCAGTGACACTCCTGGCCGCCGCCATGTTGATTGCCTTCTACAAGCTGCGTAAGCGGCACCAGCAGCGGAGCACGGTGGCAGCGGCGCGGACCATCGAGATCATCCAGATGGACGAGGAACTTCCCCAGGTTCCATCGGCCAGATCAGGTTCTAGCGGGTCTGAGGAGACTGGGCTGGCTCTGCCCATGTTACTGGAACACAACAGCACCGTCTTCAATAAGGAATACATCTCGTCGTCCTCATCGTCCTcccacagagacagggacagacacagagacagggacagggacagagctgCCTATGGGGCTCACTGGACCCATAACAACCTGGGAAACTCCCTGCACCGCTCCTCCAACCGCCAGTATTATCAGCAGCACCACAGCCTCATCAGTACCATCGCAGAGCCGTACGTCATTAAGCCAACTCACACCAAGGAGAAGGTCCAAGAGACCCAGATCTAAGGGACTCATGCTGGCCTTACTGTGGATCTAGCTGTGTGGATCTAACTCAGTGGATTTCTATATGTATCTGACTttaccccttcctctcctccttttctctctgctCACCAGTCCATGCAATAGAATGCACAAAGAAGACAGTAACTTTATTTTGTACAGAGTGCAAAATAGAGACAGTTTTTTTCTCTCTTGTACATGCTTATACATAAATAtagaaatataaaacatataaaataaatatactaTGAGGACAGTGGTGGAagattatatttaaaaaaaataaagtacaatttaaactattttctaatAACTTGTAACTTCTATTTAAAAATGAGAGATGTTGAGATGCAGTGGGGGTAGCCTATATGATGATTGATTGAGGGAGCTGTCTTGAGGAAGACTGTTCTGTTTGTTATTTTGACCATTTAGAATGCAGTAAAACCCCTTTATACCCACACCAGTTTATAGAACAACAAGCCCTAACATCAGATCAGTCTCCACAGGTTAAGTTTGTTAAAGCACCAATTCGTACTGTGCCAAACGTTGCAATAAAAGACTGGAAGATTAAGAAAACCAACAGCCACAACCAAGCAAAATCTAGACAGAGAGTCATTTGTCGAGGGAGAGCTGTGGAGAGAAGAGTGTAGATTTTGCTGTTCAGTCGCTATCAGCCAAATGTTTTCAGACTGCAGTGGATTTCTGCAGCTAAGATTTAACCCTTTGTTTATCGGAGCGAAGCTGCACGTCTTTTTAAAAGCATCTCTTTTTTATGTTACTGAATCTAAACCCATTTAGTATGATTGCATTTGATTTATCCCAGGTCCCCTTGGCTAAGATGAAGGACAGGCTATTTTGAATGGTGATTTGGTGTGATTACTTCATGCAGATTTCAGTTGCATAATGCattatgttttatatttattttcctttcctTGGGTTGCGACATGCTTCTTAATAGCATTTGTAGTGTTTTGGGTTAATGTAGTGATGCATTAAAGCAGTTATTTGCCTGCTCTCTGTAAGAGCTCTTCTATTGGTAATCCCTCACAGATACCGACATGTGGTGCAGAACGACTGGGGTTTGCTGACCGATctgcttttgaaagaaaaaaaggAGTGGTGTTGAAATTAAATGAATGTCTGGACATTGGGCTTGTTTCTCTGTGGACGTAATTGAAACAGTGAAAtatcgttttttttattttccttaTTGTAGGTATTATTTCGAGCATTATGGGGAGGCTATAAGGATGCAAAAATAAACAAAACCTTTGGTTTGTATTTCTCTACTCGGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K16351 LRRC4, NGL2; netrin-G2 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599223.2 True 4888 mRNA 0.51 2 33724849 33729966

Neighbor

gene id symbol gene type direction distance location
grm3 LOC106573453 coding downstream 800250 32867631 ~ 32924599 (-)
LOC118964459 NA coding downstream 880117 32839445 ~ 32844732 (-)
LOC110521494 LOC106573457 coding downstream 940870 32761197 ~ 32783979 (-)
LOC110532201 LOC106573459 coding downstream 990400 32530266 ~ 32734449 (-)
LOC110521272 LOC106597893 coding downstream 1224014 32485245 ~ 32500835 (-)
rbm28 rbm28 coding upstream 214868 33944834 ~ 33953935 (-)
LOC118966666 LOC106573442 coding upstream 229362 33959328 ~ 33962096 (-)
LOC110521614 LOC106573524 coding upstream 253411 33983377 ~ 34002282 (-)
si:ch1073-390k14.1 LOC106573523 coding upstream 279314 34009280 ~ 34018443 (-)
LOC110521650 LOC106573438 coding upstream 295219 34025185 ~ 34040439 (-)
G35392 NA non-coding downstream 75510 33646428 ~ 33649339 (-)
G35435 NA non-coding downstream 85584 33638664 ~ 33639265 (-)
G35382 NA non-coding downstream 161645 33562957 ~ 33563204 (-)
G35376 NA non-coding downstream 170505 33554040 ~ 33554344 (-)
G35375 NA non-coding downstream 171365 33553108 ~ 33553484 (-)
G35529 NA non-coding upstream 51424 33781390 ~ 33781624 (-)
G35586 NA non-coding upstream 75225 33805191 ~ 33865691 (-)
G35598 NA non-coding upstream 94447 33824413 ~ 33824779 (-)
G35610 NA non-coding upstream 110720 33840686 ~ 33856915 (-)
G35958 NA non-coding upstream 203055 33933021 ~ 33933259 (-)
G35299 NA other downstream 272436 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 616352 33107119 ~ 33108497 (-)
G33386 NA other downstream 1738699 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2279900 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 2591958 31131151 ~ 31132900 (-)
G35628 NA other upstream 137592 33867558 ~ 33868045 (-)
G36141 NA other upstream 547734 34277700 ~ 34362736 (-)
G36196 NA other upstream 611596 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1543743 35273709 ~ 35278005 (-)
G37907 NA other upstream 1710952 35440918 ~ 35441328 (-)

Expression


Co-expression Network