rbm28 (rbm28)


Basic Information

Item Value
gene id rbm28
gene name rbm28
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33944834 ~ 33953935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599259.2
TTCCCGGAAATTACGGATTACAACTTCCTTTCAATTCCAAGATGGCTGCCACATTCGGAAAACGTGTGTTGACCATTTCAACAAATTAGCGTTTACCATGCTTTCATACAGTTTTCCTATTATTTTGATTGACAATTTAATATATTGGAAGTAAAGACTATTTGTTTGGATAGTTTAGAATTATCTGTGGCGAGTATACATTTGGAAGTGTTGGAAagaaagtagctagctagtttgttagcTTGCCAGTGTGTTCTATTGGTTGACTGGCTAACAAAAAGCAACAGTGATCAGAACAAGAAACGTAAGGTTTTAGCACAGAATAAGCCATGTCAGCCCTTACAATATTCGTCCGGAGTTTGCCAGCAGATGCATCTAACGACCGCCTGGAGGAGATATTCTCTGAGATTGGACCTGTGAAGCACTGCTTTGTTGTCAAGGAAAAAGGTGCAGAGAAATGTCGGGGGTTTGGGTATGTCACTTACTCCATGGAGGAGGATGCACAGCGCGCTGTGAGAGAGGTGAAAGACTATGATGGAAAGAAGATAAACGTGTCGGTGGCCAAGAAGAAACTAAACGACAAGAAAAGGGGAACAACAGCCACGGCACCAAAAGATCCAGGACCACAAAAAGAACAGAAATCTGAAGGAGGCTTAAAGAAAAACCGAAGGAAAGCCAGACTGATCATCAGGAATCTCAGTTTCAAGTGCTCGAATGAGGATCTGAAGCAGACCTTTGCCAAGTTTGGGACAGTTCTGGAGGCCAACATCCCGCTCAAACCAGATGGGAAGATGAGGGGCTTTGCGTTTGTCCAGTTTAAGAACGTCTTAGAGGCAGGAAAGGCCTTGAACGCCATAAACCTGAAAGAGATCAAAGGAAGGCAGGTAGCTGTGGATTGGGCTGTGGCTAAAGACAAGTTTGTCGCTACTCAGCCAGGAGCTAAGAAAGAGGAAAAGGTTGCAGCAGAGAAAGCGGCACCTGAAAGTGActctgaagaggaggagaaggtggaggaagaggaggagaagaaaccaGAAGCACATTCAAAGAACAATCCTCTCTACAGAGTCAGCTCTAAGCCAGCTCAGCAGCCAGACAGCCCATCAGAGCACGAGAGCGAAGAGGACGATGGAGAGGATCATGAGGAGGATGAAGATTCAGAGTCTCAGGAGTCAGATTGCGATGAAACAAGTGACCTTGGGtctgatgaagatgatgaagaaGATGATGAGGATTCTGACAGTGCAGCCAACAGGAAGCCCCTCCCATCAGATATTAATCAGGGCAAAACCATCTTCATCAGGAACCTGTCGTTTGATACGGAGGAGGAGGGCTTAGAAGAGGTGTTACTGCAGTATGGAGAACTGAAGTACATCAAGATCTGCCTACACCCAGACACTGAACACTCTAAAGGTATTGCATTTGCTCAGTTCAAGTCTAAAGAAGCAGCAGAGAAATGCATTGCTGCTGCAGAGGACGAGTCAGAGagcGGGGGTATCCGTGTGGATGGTAGAAAGCTGAACATTGTAGCGGCGGTGAGCAGAGAGGATGCTGTCAAACTAAAGGACAAGAAGGTTAAAACTCATACAGGGACCAGAAACCTCTACCTGGCTAGAGAGGGATtgatACGGTCAGGAACGAAGGCAGCTGAGGGTGTTCCAGCAGCAGACATGGCCAAGAGGACCCGATTTGAGGACCTGAAGCTGACCAAGCTACGGGACATTAACGTGTTTGTGTCTAAGACCCGCTTGTGTGTCCACAACCTGCCCAAATTTGTAGACGTCAAACAACTACGAAAACTCTGCCTGAAAGCTGCAGGGGGTGGCAAGCTGGTCCGCATTACAGAGtGCAGGGTGATGTATGATAAGAAGCCGGAGCGTGGTCAGGTGTTAGGCCGGTCGCTAGGTTACGGCTTCGTTCAGTTCCAAGAACATGAACACGCTCTGAAGACACTACGATACCTCAACAACAACCCTGACATCTACGGAAAcaccaagAGGCCCATCGCTGAGTTCTCTCTTGAAGATGGAAAGAAGCTGAAGATGAAAGAAATGCGACAACAACAAGTCAAGGAGCGTTTCAAAGGGCGGGGCCCTCAGGGAGGAGTGAAGCCGCAGTCTGTAGGCAAGACTGGACCTCAGAGGTGTGCGTCTAAACCCCAGAGTGCCATGGTAACGAAGGAGGGGCCAGCGAAGACGCAGACACAGTCATTACCATCCGGACAGGACAGAAAGGATGGAGTACCTCCCCCCCAGCCACAGGCCCAGACTCTGTTCCATGCCCAGACCCAGCCGCAGGCCCAGACCCAGCCACAGGACCAGAACCAGGGCCGGCAGTATGCAGGCTTCCAGACCACCCCGGTTCTAGAACATGTAGAACTGGAGGATGGAAAGAAAAGACGGAAGGTTCTAGCCCTACCTTCTCACCGTGGCCCAAAGATCAGGGCACGTGATAAGGGGAAGCAGCAGCCTGCCCAGCCTAAGAAGCCCAAGAACCGTCCCAGCAGGAGAGAGCTACAGGGAGGAACGTCACTGGAGAAACCTACACAGCCCAGAATAAAgAGCGCAAAGGGGGCCAAGAAGCGGTTTAGGAGCCAAGAGGATGACCGCTTTGACAACCTGGTTGAACAGTACAAGAGAAAACTGATGGGCGGCAACAAGACCACAAACATCAAGAAGAACAAATGGTTCAACAGTtagttgtgtgtgagagagagcgaggccaTTTTTTGGTATACCCCAATAACCTTTTCCTTATGTTGGTTTCTACATCATTGACATGTTGAAACAAGGGTATGATGGTTGGAATAACATTGACCCATGAACTGTGTATAATGAAGGAGAGTCCGGCGTAGTACACTGTCATATGTCTGTGTCCTCATGTTATACACAACGTGTGGTGTGCCATCAGTGGTAAAGGAAAGCTAAGAGATGGAATATCGGAATATAATTAACTTCCTGAATTGACCCCGACTCTGACAGACTGCATCAGCTGGAAGCATATGTGTGTTCTTCACAACAGATGCTGATGCTTTActctgtactgtgttttatgttcatgttAACTATTGGTCAATAATAATGTAAAGAATATGAGCTTTCAAAAAtgtaaattacatttttattaaagAACTTACAAAGACAA
>XM_021599268.2
TTCCCGGAAATTACGGATTACAACTTCCTTTCAATTCCAAGATGGCTGCCACATTCGGAAAACGTGTGTTGACCATTTCAACAAATTAGCGTTTACCATGCTTTCATACAGTTTTCCTATTATTTTGATTGACAATTTAATATATTGGAAGTAAAGACTATTTGTTTGGATAGTTTAGAATTATCTGTGGCGAGTATACATTTGGAAGTGTTGGAAagaaagtagctagctagtttgttagcTTGCCAGTGTGTTCTATTGGTTGACTGGCTAACAAAAAGCAACAGTGATCAGAACAAGAAACGTAAGGTTTTAGCACAGAATAAGCCATGTCAGCCCTTACAATATTCGTCCGGAGTTTGCCAGCAGATGCATCTAACGACCGCCTGGAGGAGATATTCTCTGAGATTGGACCTGTGAAGCACTGCTTTGTTGTCAAGGAAAAAGGTGCAGAGAAATGTCGGGGGTTTGGGTATGTCACTTACTCCATGGAGGAGGATGCACAGCGCGCTGTGAGAGAGGTGAAAGACTATGATGGAAAGAAGATAAACGTGTCGGTGGCCAAGAAGAAACTAAACGACAAGAAAAGGGGAACAACAGCCACGGCACCAAAAGATCCAGGACCACAAAAAGAACAGAAATCTGAAGGAGGCTTAAAGAAAAACCGAAGGAAAGCCAGACTGATCATCAGGAATCTCAGTTTCAAGTGCTCGAATGAGGATCTGAAGCAGACCTTTGCCAAGTTTGGGACAGTTCTGGAGGCCAACATCCCGCTCAAACCAGATGGGAAGATGAGGGGCTTTGCGTTTGTCCAGTTTAAGAACGTCTTAGAGGCAGGAAAGGCCTTGAACGCCATAAACCTGAAAGAGATCAAAGGAAGGCAGGTAGCTGTGGATTGGGCTGTGGCTAAAGACAAGTTTGTCGCTACTCAGCCAGGAGCTAAGAAAGAGGAAAAGGTTGCAGCAGAGAAAGCGGCACCTGAAAGTGActctgaagaggaggagaaggtggaggaagaggaggagaagaaaccaGAAGCACATTCAAAGAACAAAGTCAGCTCTAAGCCAGCTCAGCAGCCAGACAGCCCATCAGAGCACGAGAGCGAAGAGGACGATGGAGAGGATCATGAGGAGGATGAAGATTCAGAGTCTCAGGAGTCAGATTGCGATGAAACAAGTGACCTTGGGtctgatgaagatgatgaagaaGATGATGAGGATTCTGACAGTGCAGCCAACAGGAAGCCCCTCCCATCAGATATTAATCAGGGCAAAACCATCTTCATCAGGAACCTGTCGTTTGATACGGAGGAGGAGGGCTTAGAAGAGGTGTTACTGCAGTATGGAGAACTGAAGTACATCAAGATCTGCCTACACCCAGACACTGAACACTCTAAAGGTATTGCATTTGCTCAGTTCAAGTCTAAAGAAGCAGCAGAGAAATGCATTGCTGCTGCAGAGGACGAGTCAGAGagcGGGGGTATCCGTGTGGATGGTAGAAAGCTGAACATTGTAGCGGCGGTGAGCAGAGAGGATGCTGTCAAACTAAAGGACAAGAAGGTTAAAACTCATACAGGGACCAGAAACCTCTACCTGGCTAGAGAGGGATtgatACGGTCAGGAACGAAGGCAGCTGAGGGTGTTCCAGCAGCAGACATGGCCAAGAGGACCCGATTTGAGGACCTGAAGCTGACCAAGCTACGGGACATTAACGTGTTTGTGTCTAAGACCCGCTTGTGTGTCCACAACCTGCCCAAATTTGTAGACGTCAAACAACTACGAAAACTCTGCCTGAAAGCTGCAGGGGGTGGCAAGCTGGTCCGCATTACAGAGtGCAGGGTGATGTATGATAAGAAGCCGGAGCGTGGTCAGGTGTTAGGCCGGTCGCTAGGTTACGGCTTCGTTCAGTTCCAAGAACATGAACACGCTCTGAAGACACTACGATACCTCAACAACAACCCTGACATCTACGGAAAcaccaagAGGCCCATCGCTGAGTTCTCTCTTGAAGATGGAAAGAAGCTGAAGATGAAAGAAATGCGACAACAACAAGTCAAGGAGCGTTTCAAAGGGCGGGGCCCTCAGGGAGGAGTGAAGCCGCAGTCTGTAGGCAAGACTGGACCTCAGAGGTGTGCGTCTAAACCCCAGAGTGCCATGGTAACGAAGGAGGGGCCAGCGAAGACGCAGACACAGTCATTACCATCCGGACAGGACAGAAAGGATGGAGTACCTCCCCCCCAGCCACAGGCCCAGACTCTGTTCCATGCCCAGACCCAGCCGCAGGCCCAGACCCAGCCACAGGACCAGAACCAGGGCCGGCAGTATGCAGGCTTCCAGACCACCCCGGTTCTAGAACATGTAGAACTGGAGGATGGAAAGAAAAGACGGAAGGTTCTAGCCCTACCTTCTCACCGTGGCCCAAAGATCAGGGCACGTGATAAGGGGAAGCAGCAGCCTGCCCAGCCTAAGAAGCCCAAGAACCGTCCCAGCAGGAGAGAGCTACAGGGAGGAACGTCACTGGAGAAACCTACACAGCCCAGAATAAAgAGCGCAAAGGGGGCCAAGAAGCGGTTTAGGAGCCAAGAGGATGACCGCTTTGACAACCTGGTTGAACAGTACAAGAGAAAACTGATGGGCGGCAACAAGACCACAAACATCAAGAAGAACAAATGGTTCAACAGTtagttgtgtgtgagagagagcgaggccaTTTTTTGGTATACCCCAATAACCTTTTCCTTATGTTGGTTTCTACATCATTGACATGTTGAAACAAGGGTATGATGGTTGGAATAACATTGACCCATGAACTGTGTATAATGAAGGAGAGTCCGGCGTAGTACACTGTCATATGTCTGTGTCCTCATGTTATACACAACGTGTGGTGTGCCATCAGTGGTAAAGGAAAGCTAAGAGATGGAATATCGGAATATAATTAACTTCCTGAATTGACCCCGACTCTGACAGACTGCATCAGCTGGAAGCATATGTGTGTTCTTCACAACAGATGCTGATGCTTTActctgtactgtgttttatgttcatgttAACTATTGGTCAATAATAATGTAAAGAATATGAGCTTTCAAAAAtgtaaattacatttttattaaagAACTTACAAAGACAA

Function

symbol description
rbm28 Predicted to enable RNA binding activity. Human ortholog(s) of this gene implicated in alopecia, neurologic defects, and endocrinopathy syndrome. Orthologous to human RBM28 (RNA binding motif protein 28).

NR:

description
RNA-binding protein 28 isoform X2

GO: NA

KEGG:

id description
K14573 NOP4, RBM28; nucleolar protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599259.2 False 3144 mRNA 0.47 18 33944834 33953935
XM_021599268.2 True 3132 mRNA 0.47 18 33944834 33953935

Neighbor

gene id symbol gene type direction distance location
lrrc4.2 LOC106573446 coding downstream 214868 33724849 ~ 33729966 (-)
grm3 LOC106573453 coding downstream 1020235 32867631 ~ 32924599 (-)
LOC118964459 NA coding downstream 1100102 32839445 ~ 32844732 (-)
LOC110521494 LOC106573457 coding downstream 1160855 32761197 ~ 32783979 (-)
LOC110532201 LOC106573459 coding downstream 1210385 32530266 ~ 32734449 (-)
LOC118966666 LOC106573442 coding upstream 5393 33959328 ~ 33962096 (-)
LOC110521614 LOC106573524 coding upstream 29442 33983377 ~ 34002282 (-)
si:ch1073-390k14.1 LOC106573523 coding upstream 55345 34009280 ~ 34018443 (-)
LOC110521650 LOC106573438 coding upstream 71250 34025185 ~ 34040439 (-)
iqsec3b LOC106573430 coding upstream 246420 34200355 ~ 34245388 (-)
G35966 NA non-coding downstream 1862 33942726 ~ 33942972 (-)
G35964 NA non-coding downstream 5784 33938838 ~ 33939050 (-)
G35961 NA non-coding downstream 8366 33936214 ~ 33936468 (-)
G35960 NA non-coding downstream 8673 33935889 ~ 33936161 (-)
G35958 NA non-coding downstream 11575 33933021 ~ 33933259 (-)
G35968 NA non-coding upstream 566 33954501 ~ 33955468 (-)
G35979 NA non-coding upstream 14122 33968057 ~ 33968349 (-)
G35969 LOC106573441 non-coding upstream 15255 33969190 ~ 33970767 (-)
G35982 NA non-coding upstream 19571 33973506 ~ 33973779 (-)
G35986 LOC106573441 non-coding upstream 20340 33974275 ~ 34068011 (-)
G35628 NA other downstream 76789 33867558 ~ 33868045 (-)
G35299 NA other downstream 492421 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 836337 33107119 ~ 33108497 (-)
G33386 NA other downstream 1958684 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2499885 31426123 ~ 31444964 (-)
G36141 NA other upstream 323765 34277700 ~ 34362736 (-)
G36196 NA other upstream 387627 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1319774 35273709 ~ 35278005 (-)
G37907 NA other upstream 1486983 35440918 ~ 35441328 (-)
G37976 NA other upstream 1629357 35583292 ~ 35583608 (-)

Expression


Co-expression Network