LOC118966666 (LOC106573442)


Basic Information

Item Value
gene id LOC118966666
gene name LOC106573442
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33959328 ~ 33962096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118966666
ATGCTTTTCCGTGGGATCACAGCTCACCGCATCAGCAAGACCATCGTCTTTTACCTGAACGAGACGGCATCACCTAATCCTTCACCTGGGTCTCCCATTGGGCCTCCCCTTAGCCCTCTGTCTGCCCTGAACGATGCAGCATgtacccccaccccaaccaagcCCCTGCTGCTAATGCTTCCCTGGTTGGGGTCGCGACCCCAGGCTGTGGCCAAGTACTGTGAGATCTATTTCCGTACAGGCTTCGACGTGCTCATAGTGGAGAGCGAGGTAAGTCAGTTTCTGTGGCCTGGTTGGGGTCTAGACTATGGAGCAAGGGTACTGGATGTCCAGCAGAGTGACCGCTTTGTGTCACGCCCCTTACTCGTGCACGCCTTTTCCATAGGAGGATACACCTTCACCCAGTTGCTGGTGCACATATCCCACGACACACAGAAGTACCACAGCTTCATTAAGAGGATCAAAGGCCACATCTATGACAGCCTAGTGCTGGGCTCACTGGAGAGGATGGCTACCGGTCTAAGTAAGAACTTATTCCCCCGGCTGGAGAGCCTGGTTAAATGAGCCAGCATACTCTACTTCAGAGCCTTCAAATGCCACACGGTCGACTACTTCAACACTGGCATCAATGTCTGGCATCTTCAGGAACAACCCTGTCGCCCTCATCTTCTTCTGCCAGAACGACACGCTGTGTGACCCTGAGGTCATGGAGGAGAtcatcacctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacGCCACCTGGGACGACACCCCCAGGAGTACCTGTTCACCTTAGAGACCTTCCTCCAGAGTCTCAGTATGGTCCCTCTCAAGGCCAAGATGTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106573442

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118966666 True 886 mRNA 0.54 4 33959328 33962096

Neighbor

gene id symbol gene type direction distance location
rbm28 rbm28 coding downstream 5393 33944834 ~ 33953935 (-)
lrrc4.2 LOC106573446 coding downstream 229362 33724849 ~ 33729966 (-)
grm3 LOC106573453 coding downstream 1034729 32867631 ~ 32924599 (-)
LOC118964459 NA coding downstream 1114596 32839445 ~ 32844732 (-)
LOC110521494 LOC106573457 coding downstream 1175349 32761197 ~ 32783979 (-)
LOC110521614 LOC106573524 coding upstream 21281 33983377 ~ 34002282 (-)
si:ch1073-390k14.1 LOC106573523 coding upstream 47184 34009280 ~ 34018443 (-)
LOC110521650 LOC106573438 coding upstream 63089 34025185 ~ 34040439 (-)
iqsec3b LOC106573430 coding upstream 238259 34200355 ~ 34245388 (-)
LOC118964492 NA coding upstream 334591 34296687 ~ 34302605 (-)
G35968 NA non-coding downstream 3860 33954501 ~ 33955468 (-)
G35966 NA non-coding downstream 16356 33942726 ~ 33942972 (-)
G35964 NA non-coding downstream 20278 33938838 ~ 33939050 (-)
G35961 NA non-coding downstream 22860 33936214 ~ 33936468 (-)
G35960 NA non-coding downstream 23167 33935889 ~ 33936161 (-)
G35979 NA non-coding upstream 5961 33968057 ~ 33968349 (-)
G35969 LOC106573441 non-coding upstream 7094 33969190 ~ 33970767 (-)
G35982 NA non-coding upstream 11410 33973506 ~ 33973779 (-)
G35986 LOC106573441 non-coding upstream 12179 33974275 ~ 34068011 (-)
G35988 NA non-coding upstream 84216 34046312 ~ 34047304 (-)
G35628 NA other downstream 91283 33867558 ~ 33868045 (-)
G35299 NA other downstream 506915 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 850831 33107119 ~ 33108497 (-)
G33386 NA other downstream 1973178 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2514379 31426123 ~ 31444964 (-)
G36141 NA other upstream 315604 34277700 ~ 34362736 (-)
G36196 NA other upstream 379466 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1311613 35273709 ~ 35278005 (-)
G37907 NA other upstream 1478822 35440918 ~ 35441328 (-)
G37976 NA other upstream 1621196 35583292 ~ 35583608 (-)

Expression


Co-expression Network