si:ch1073-390k14.1 (LOC106573523)


Basic Information

Item Value
gene id si:ch1073-390k14.1
gene name LOC106573523
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34009280 ~ 34018443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976155.1
ttaagccttgagacaatcgaCACATGATTGTCTATGTGTGCCATTCacagggtgaatgagcaagacaaaatattttgtGCCTTCGAAACAGGGTATGTAGTGGGTTCCAGGTTCACCGGTTTGTGTcatgaactgcaatgctgctgggtttttcacgctcaacagtttcctgtgtgtatcaagaatggtccatcacccaaaggacacccagccaacttgacacaactgtggtaagcattggagtcaacatgggccagcatccctgtggaatgctttcaaaaTGCTTTTTTGGTGTGTATAGggagtatggacagtatatgaatagaataggtgtggacagcagtagttgtaTAGGATGAGCcaggactagaatacagtatatccatataaagtggataaaacagtatgtaaccatgaataaagggaccagtgttcaatgtctctatgtacatagggcagcagtcacTAAGGTTCAGCCTAGAGTACCGGAAGGTGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAACACTGACTAAGGTTAAGGGCAAGTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAACACTGATTAAGGTTCAGGGCAAGTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTGGTGACAgataaacagtctgatggcctggagataaaagctgtttatCAGTCATGGCTCGGGttgctgaggtccttgatgatcttcttgaccttcctgtgacaccgggtgctgtagatgtcctggaaggcaggcagtgtgccctgatgatgcgttgggctgaccacaccaccctctggagagccctcatctcttctcctgtcaCATCTTTTTCTCTCTTTGATCTCTTAGGTATACATTCAAAACAGATCTTTATTGATAGTATGTGACGGCAGACAGATGTGTTTAGGCTTATGGCAGATTGGTCCATTCATTGATCTGTCTGttagtgagagacggagagaagccAGCTAATCTCACTGTTCTCTATTGATCACACACTTAGAGACTACATACTTTGTCTAAACACTATTGATCTCCCTCTCGTATAGCATGAGGATCAAGAGAATAAATTAAGGATAAAAGACACTTGGTGGGAGAGGGATGATGATTTTATTTGTCTTTAGTGTGGAGAGGGAAGCTGTGAGTGTTTCTCAGGAGCACCATGAGCGTAGGAAGTGAGACTAATGACTGTAATATTGTAGACTTGGGTGCCCTCTACTGGTCACAATGTTACATTGCATCACATCCGATGTAATTACAAAACAGCGTGGGATTGAGCTTGTGTAACTGGCTATCAGCTGTTGAGTAACTCATTCACGTTGCAGCATACTCGATCCTCTCTGTCCCACTATCACCACTAATTGAAAACTATCGAAAAATGCAAAAGAAATCAACAACCTTTAACATTGTCTTCTCATGGATGATTACGACCTAATCtggatttttggggggtatttggAATTTTAAGAGAGACTGTAGGGAATTCCTCTGTTTTATTGCTTTTCATCACCAGCAATAGACCATGCCTGTATCGGGTGGTGAGGACCCCATGTCCCAGGTTCGTCAGATGCTGAGAGAGTTGCTTGTGGGGAGAGAGAACGCCGAGGGcttcttctgtctgtgtgtgtctgtactgggACACAACGATACACGGACACATTTCTTGCCGCTCATCCAGCTCCTAGCCACCGATCACAACAGGCTTCACACCACCCTCACCTCCATCTATTTGGAATACTTCTCCAAGGATGAGGATGATGAGTTGGCAGTGGCTCTGGCTCTGTCCCTATTAGAGGTCAAAGGGCAACAGCAGACTAATACCAAGCCCCTCTTCCTAGACCCTAAACTCCAGGGTCAAACAGACACCCAGGCTACGGCAACCTACAGACCCCAGAATAGTTCCATTCAGAGTCAGTCAGTTTCTCCTAATGGTAGCTCCAGCCAGCCTCCGCCAGCCCCTCTGCCCACGGGTGCGAGCTACGCCCAGCTAGCAGCAGtaggaggaaggagacagactcAGGCTCAACACCAAGACTCCACATCACCCAGAAGATCATCTGGACATGGCAGCTCTcctcagacagagagtcagagaggccCAACCCAGAcccagaaacagacagacataaagtGGTCTAACGTCACTCAGGATGTGTGCGCCTCTATTGCCACTTTGACATCCAATCTCAACCAAACCAAAGATGACGTCACTGTGGTGGAGTGCAAAGTGGACCAATCTGAGAAGCCAAAGCGCTCAAAGAACCGACGTCAGCGGAGGAAGGGGTATGGCCAGCAGGTGGTAGGTGTGCCTCGATGCCCCTCGGCTCCACCCCCTGTGCTGCTGTGGTTCCGCAGGGACCTGCGTCTCCATGACAACCCAGCTGTGATTGGCTCGTTGGAGGCTGGAGGGCCGGTCATCCCCGTCTTTATCTGGtgcccagaggaggaggagggtcctggGGTAACCGTGGCTATGGGAGGGGCCTGTAAATTCTGGCTGCACCAGGCCCTGTCCTGTCTCAGCTCTGCTCTGGAACACATCGGCAGCCATCTTGTTTTCCTTCGgccagatgaggagagagaggggattggtTCTTCGCTGCTTGCCCTGAGGAGTCTGGTGAGAGAGACGGGGGCTCAGACGGTGCTGGCTAGCGCCCTCTATGAGCCGTGGCTGAGAGAGCGGGACCAGGTAGTGGTGTCAGCGCTGCAGAAAGACAGGGTGGAGGTTAACATGGTCCACTCCTACTGTCTCAGAGACCCTTATACTGTTACTACTGAGGGGGTGGGACTCAGAGGTATTGGTTCTGTATCCCACTTCATGAGTTGCTGTCAGATGAACCCTGGCCCAGGGTTAGGGGTTCCCCTGGACCCCCCCATATcgctcccctcaccctctgtctggcCCAGAGGCTGCCCTCTGGAGGGGCTAGGACTGGCACGAATGCCCTGCAGGAAGGATGGAACCACGATTGACTGGGCAGCTAACATCAGGAGTTCATGGGACTTTAGTGAGGAGGGGGCCCAGTCACGTCTAGAGGCCTTTCTAAAtgatgGTGTGTACAGATATGAGAAGGAATCAGGGCGTGCGGATGCCCCGAACACCAGCTGTCTGTCTCCTTACCTGCACTTTGGCCAGCTGAGTGCTCGCTGGCTGCTGTGGGACACTAAAGGGGCGCGCTGCCGATCCCCCAAGTTCATACGAAAACTGGCCTGGAGGGACCTGGCCTACTGGCAGCTAACATTGTTCCCAGACCTGCCCTGGGAATCACTCAGACCACCATACAAGGCCCTTCGGTGGAGCAATGAGAGGGGTCATCTGAAGGCGTGGCAGAAGGGCAGGACAGGTTATCCTCTAGTAGACGCTGCAATGAGACAGCTGTGGCTGACTGGATGGATGAACAACTATATGAGACACGTAGTGGCTTCTTTCCTCATAGCTTATCTCCATCTACCATGGCAGGAGGGATATCGCTGGTTCCAGgacacCCTTGTGGATGCTGACGTGGCCATAGATGCCATGATGTGGCAGAATGGAGGCATGTGTGGTCTGGACCACTGGAACTTTGTCATGCACCCTGTTGACGCAGCCATGACCTGTGACCCTTACGGAAGCTATGTCAGGAAGTGGTGCCCTGAGCTGGCGGTGCTGCATGATGACCACATACACAAACCCTGGAAGTGCCCAGCCTCCATGCTGCGCCGTGCCGGTGTAGTCCTAGGCCAGTCCTACCCAGAGCGTGTGGTGAcagatctggaggagaggagaagccaGTCTTTGCAGGACGTGGCATTGGTGAGGCGGCGTTTTGGGCAGTACGTGGACCCCTGCTCGGGGTGCGACCTGGTCCCCCTGCCCCCCCGCCTGGTCTCAGAGGCCATGGGTgGAGGTATGGTCAACACAGGTGGGCAGTTCCTCCTGCCTGTTATCACCCGTATGGAGTTCAAGCACCAATCAGACGATCCAGACGCTGCCTTTAACCCCTATAATGCCGTTCTGAAGGGCTACGTGAGCCGCAGGCGGAATGAGACCATCGCCTTCCTGAACCAGACAGACTTCACAGCCAGCGTGATAAAcgagggagcagagaggagggaaagacagGAGCAAgaccagaggaggatggagggactaCCACGCCCCCTTGCAGTTGAACGAAGGGGAAAGAGGACCCCCGCTGCCAAGGACAGGTTCTCCACAGTGCCTGGGGGAGTGGCTACTTCTCACAAATGACCATAAGGGCAGGGGCTAAAGGTTCGATAGAGCCACTGTGGTGCCCAATGGCCTTTCCTCAATTGATTTGCTTAACTTCTGCGTCCTTCCTCACCTACTTTTGAAAATGGTCAAAGGTAAATCAAGGAGACGCGGGGAAGAGAGGGAAcgtggacaaaaatgtgcttgtATCAATTGTCTCTCCTTCATTCATGTGTTGTCAGGCAAATTGTTTACAGTGGATCacaaaaaataaatgtgtaaag

Function

NR:

description
PREDICTED: deoxyribodipyrimidine photo-lyase-like

GO: NA

KEGG:

id description
K12119 CRY2; cryptochrome 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976155.1 True 4652 mRNA 0.52 10 34009280 34018443
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521614 LOC106573524 coding downstream 6998 33983377 ~ 34002282 (-)
LOC118966666 LOC106573442 coding downstream 47184 33959328 ~ 33962096 (-)
rbm28 rbm28 coding downstream 55345 33944834 ~ 33953935 (-)
lrrc4.2 LOC106573446 coding downstream 279314 33724849 ~ 33729966 (-)
grm3 LOC106573453 coding downstream 1084681 32867631 ~ 32924599 (-)
LOC110521650 LOC106573438 coding upstream 6742 34025185 ~ 34040439 (-)
iqsec3b LOC106573430 coding upstream 181912 34200355 ~ 34245388 (-)
LOC118964492 NA coding upstream 278244 34296687 ~ 34302605 (-)
LOC110521742 LOC105022204 coding upstream 440985 34459428 ~ 34466711 (-)
LOC110521764 LOC106573421 coding upstream 455525 34473968 ~ 34490179 (-)
G35982 NA non-coding downstream 35501 33973506 ~ 33973779 (-)
G35969 LOC106573441 non-coding downstream 38513 33969190 ~ 33970767 (-)
G35979 NA non-coding downstream 40931 33968057 ~ 33968349 (-)
G35968 NA non-coding downstream 53812 33954501 ~ 33955468 (-)
G35966 NA non-coding downstream 66308 33942726 ~ 33942972 (-)
G35988 NA non-coding upstream 27869 34046312 ~ 34047304 (-)
G36028 NA non-coding upstream 65462 34083905 ~ 34084325 (-)
G36030 NA non-coding upstream 67645 34086088 ~ 34086337 (-)
G36045 NA non-coding upstream 96377 34114820 ~ 34115042 (-)
G36050 NA non-coding upstream 106814 34125257 ~ 34125468 (-)
G35628 NA other downstream 141235 33867558 ~ 33868045 (-)
G35299 NA other downstream 556867 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 900783 33107119 ~ 33108497 (-)
G33386 NA other downstream 2023130 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2564331 31426123 ~ 31444964 (-)
G36141 NA other upstream 259257 34277700 ~ 34362736 (-)
G36196 NA other upstream 323119 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1255266 35273709 ~ 35278005 (-)
G37907 NA other upstream 1422475 35440918 ~ 35441328 (-)
G37976 NA other upstream 1564849 35583292 ~ 35583608 (-)

Expression

si:ch1073-390k14.1(LOC106573523) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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si:ch1073-390k14.1(LOC106573523) Expression in each Bioproject

Bar chart with 21 bars.
si:ch1073-390k14.1(LOC106573523) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network