Gene
RNA
| Item | Value |
|---|---|
| gene id | calub |
| gene name | LOC106573432 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 34064371 ~ 34068111 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| calumenin-B isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0042470 | melanosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0033018 | sarcoplasmic reticulum lumen | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K23901 | CALU; calumenin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021599564.2 | False | 1099 | mRNA | 0.48 | 7 | 34064371 | 34066582 |
| XM_036976433.1 | True | 2480 | mRNA | 0.44 | 6 | 34065053 | 34068111 |
34,062,000
34,063,000
34,064,000
34,065,000
34,066,000
34,067,000
34,068,000
34,069,000
34,070,000
34,071,000
34,072,000
34,073,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521655 | LOC106573426 | coding | upstream | 6543 | 34046247 ~ 34057828 (+) |
| LOC110521627 | LOC106573440 | coding | upstream | 58343 | 34004180 ~ 34006028 (+) |
| LOC110521608 | LOC106573441 | coding | upstream | 86503 | 33967750 ~ 33977868 (+) |
| LOC110521571 | LOC106573447 | coding | upstream | 414604 | 33622869 ~ 33649767 (+) |
| LOC110521553 | LOC106573448 | coding | upstream | 467701 | 33534145 ~ 33596670 (+) |
| LOC118966672 | LOC106561218 | coding | downstream | 542 | 34068653 ~ 34071754 (+) |
| LOC110532237 | LOC106573511 | coding | downstream | 5657 | 34073768 ~ 34139647 (+) |
| LOC110521761 | LOC106573433 | coding | downstream | 72731 | 34140842 ~ 34149017 (+) |
| LOC110521642 | LOC106573425 | coding | downstream | 86434 | 34154545 ~ 34199822 (+) |
| LOC110521723 | LOC106573431 | coding | downstream | 192476 | 34260587 ~ 34287836 (+) |
| G35751 | NA | non-coding | upstream | 36538 | 34026127 ~ 34027833 (+) |
| G35718 | impdh1b | non-coding | upstream | 71044 | 33992802 ~ 33993327 (+) |
| G35711 | NA | non-coding | upstream | 90657 | 33973222 ~ 33973714 (+) |
| G35708 | NA | non-coding | upstream | 92853 | 33971166 ~ 33971518 (+) |
| G35705 | NA | non-coding | upstream | 99144 | 33965017 ~ 33965227 (+) |
| G35786 | NA | non-coding | downstream | 46987 | 34115098 ~ 34115358 (+) |
| G35788 | NA | non-coding | downstream | 49805 | 34117916 ~ 34118663 (+) |
| G35916 | NA | non-coding | downstream | 300042 | 34368153 ~ 34451332 (+) |
| G35700 | NA | other | upstream | 103924 | 33960060 ~ 33960447 (+) |
| G35699 | NA | other | upstream | 105690 | 33958097 ~ 33958681 (+) |
| G34963 | NA | other | upstream | 360909 | 33701777 ~ 33703462 (+) |
| LOC118964465 | LOC106573449 | other | upstream | 663934 | 33371468 ~ 33402776 (+) |
| sema3e | LOC106573450 | other | upstream | 740766 | 33268524 ~ 33326523 (+) |
| LOC110521835 | LOC106573423 | other | downstream | 422009 | 34490120 ~ 34507419 (+) |
| LOC110521947 | LOC106573413 | other | downstream | 696060 | 34763838 ~ 34808250 (+) |
| LOC110521950 | LOC106573403 | other | downstream | 1156413 | 35198681 ~ 35281121 (+) |
| G37450 | NA | other | downstream | 1523279 | 35591390 ~ 35591927 (+) |
| LOC110522073 | LOC106573381 | other | downstream | 1819388 | 35815461 ~ 35891607 (+) |
