LOC110521761 (LOC106573433)


Basic Information

Item Value
gene id LOC110521761
gene name LOC106573433
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34140842 ~ 34149017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051563.1
GCTAAATTCAAAGTTGTGTTGCGTCACTGGGGAGGACTCCTCGGTACAGTTCAGCTGTGAttacactcctcctcctcttacacAGAACTCTGACAACCTCAGTACTCACTGAAGCCACTGGACATTACCTCGCTCTTCGGTACATAGATGAGATATCCAAACAGACAGGTTTTCTGATTCCAAAGCCATATTGATATTGGATGTATGCATGTTGTGGTACTATCTTTAGAGGATGGTGCATGTCACTCCTGTTGTGCACTGATGAGAGGACCAGGCTTCCCAATGGATGGAATGGTGCGTGTGTGGCTGCTGATAGGGTTCATccaggTGGTCAGTTTCTCTTGTGTCCAGTGCGCCGAGTTGGCGGTCGTGGTTGTTGAGGTTATGTTTGGCCGCTTCCCCTCTGGTCCAGACTGCTACACTATCTCCTACAGAACGGCACACAACCTCACGGTGTGGCTTGATCCTATTGGCCGCTCTTGAGTGTTCACCTGACTGCAGGCTGCTGCTGCAATTGGCTGAGGAGCCAGTAGGAAGTGACATCACATTGAACGCTATAAAAAAAAACGCCACACTGGAGACTAAGACCTTTCATATTGctcctgtccccctctcctctctccgtgtCGAGGTGACCACCACCAGTGCTTTGCTGTCCTGCACCCTACAGAACCAACAGACTCTCACTGCCCTCACTCTTCACTATCAtgcacaccaaacacacacacactgaacacacacacactgaccacacacacaaCTCCTCGTACGCAGTGAGAGGTCTGCAGCCTGGAGCACACTACAGCATCACAGCAGAGTTGACCACGCCCTTCACACACCTCAACATCAGCCTCACCCAGAGACTACACACCACCATGGAGACAgCCCAATGTCCTATTGGTTGGCTGGCAAGCGGAAGGAGCTACTATAGTGTGAGTAGGTAGAGCCTGTCATGGGCCGACGCCCATGTATGGGCGTGGCTTCAGGAGGTCACCTGATAGACGTTAAAACAGAgacagacctcctcctcctctcctctcacctgacCACACATAACAACCTGCTACTGCTCTGGACCGCTCTCAATGACagaaagGATAAGAGGTGGCCCCACTCGTCCGATGGCTCCTCCTACAACATGGCTAGTGCTATCATTATCGCTGCTAGCCAATCAGACGGACTGTTTTGCCCTGCAGAAGAACTCTACTGGACCCGGCTACTTTCTTACGCCGTTCTTCTGCCACATCCTTTTACCCTTTATCCGTTACTGGGAAACAGAAAGAAAAGCAGATATCCACTGGAGTGACGTCACCCCCCAGCTCTATGTCCAATACAAAGATcaggaggaaggggaagaaaatggggaagaggagaaagaaagggagaagagaAGTGCAGGTCGTGTCCCAGTGTCCCTGTTGTCCAGAGGGCTGAAGGTGCCAGGTCTGAAGATCTACTCTCTGTCCCTCAGAGCCTCTCACCTCGCTGGGGCCGCTTGAAGCCTTGGGAACACGCACATCACTCACACACGGCCCCTTACCCCTCGGAACATCACCATTTGCAATGTGACAGCCAGTCAGATCACAGTAAGCTGGACGGCCCCAGACTCCCAGCATGCTGTGCAGTGGGGCTTCCTGGTTTGCTGGGGGGATGTAGCTTCAGgccaggagaggagaaggggcgTGGCCAGCAGTTCCAGGTCGACTGTGATTGGAGGACTGGAGGGGTTCAGGAAGTACAGGGTCAGAGTTAACTCCGTCACAGAACATGATGTGGCAAGTAGTGGAGGAACTGACCATACACACTGcgctgAACCCCCCAGGTGGTGTGTATGTTTCTAGCAGAGGGGAGAATCTGACAACGTGTTGGCCGACCCTGTCAGGTGCGTGTGTGTACTTCTGCCGTCACCCAGCAGTGTGAGAGAGGGCTCAGTAACAGAGTCGTCAGTAGAGATGCTTTGGGATCCAGCCCCTGGACATGGACACAACTATGAAGTCATCTGTCTCGACTGTCATCACACGCTTATGGTACttctgtagagtgtgtgtgtgtgtgtttataaagtgtgtgtgcatgtatactGTGTGTATGTGGTCGAGTatctgtataatgtgtgtgtatgtggtcgATTATCAAATCAAGTGCCATGTAGActaagagtgaaatgcttacttaagcaGCATTTTTTGGGCCCTTCCTAACATTGCAAAGAGAAAACaagagaaattatagaaaaataataacaccaGGAATAAATATCCAATGGGTCCAAGCGTaaggacttcaggaaacagcagagggaacacccccttatccacatcgatggaacagtagtggagagggtagtaggttttaagttcctcggcgtacacatcacagacaaactgaattgat
>XR_005051565.1
GCTAAATTCAAAGTTGTGTTGCGTCACTGGGGAGGACTCCTCGGTACAGTTCAGCTGTGAttacactcctcctcctcttacacAGAACTCTGACAACCTCAGTACTCACTGAAGCCACTGGACATTACCTCGCTCTTCGGTACATAGATGAGATATCCAAACAGACAGGTTTTCTGATTCCAAAGCCATATTGATATTGGATGTATGCATGTTGTGGTACTATCTTTAGAGGATGGTGCATGTCACTCCTGTTGTGCACTGATGAGAGGACCAGGCTTCCCAATGGATGGAATGGTGCGTGTGTGGCTGCTGATAGGGTTCATccaggTGGTCAGTTTCTCTTGTGTCCAGTGCGCCGAGTTGGCGGTCGTGGTTGTTGAGGTTATGTTTGGCCGCTTCCCCTCTGGTCCAGACTGCTACACTATCTCCTACAGAACGGCACACAACCTCACGGTGTGGCTTGATCCTATTGGCCGCTCTTGAGTGTTCACCTGACTGCAGGCTGCTGCTGCAATTGGCTGAGGAGCCAGTAGGAAGTGACATCACATTGAACGCTATAAAAAAAAACGCCACACTGGAGACTAAGACCTTTCATATTGctcctgtccccctctcctctctccgtgtCGAGGTGACCACCACCAGTGCTTTGCTGTCCTGCACCCTACAGAACCAACAGACTCTCACTGCCCTCACTCTTCACTATCAtgcacaccaaacacacacacactgaacacacacacactgaccacacacacaaCTCCTCGTACGCAGTGAGAGGTCTGCAGCCTGGAGCACACTACAGCATCACAGCAGAGTTGACCACGCCCTTCACACACCTCAACATCAGCCTCACCCAGAGACTACACACCACCATGGAGACAgGATAAGAGGTGGCCCCACTCGTCCGATGGCTCCTCCTACAACATGGCTAGTGCTATCATTATCGCTGCTAGCCAATCAGACGGACTGTTTTGCCCTGCAGAAGAACTCTACTGGACCCGGCTACTTTCTTACGCCGTTCTTCTGCCACATCCTTTTACCCTTTATCCGTTACTGGGAAACAGAAAGAAAAGCAGATATCCACTGGAGTGACGTCACCCCCCAGCTCTATGTCCAATACAAAGATcaggaggaaggggaagaaaatggggaagaggagaaagaaagggagaagagaAGTGCAGGTCGTGTCCCAGTGTCCCTGTTGTCCAGAGGGCTGAAGGTGCCAGGTCTGAAGATCTACTCTCTGTCCCTCAGAGCCTCTCACCTCGCTGGGGCCGCTTGAAGCCTTGGGAACACGCACATCACTCACACACGGCCCCTTACCCCTCGGAACATCACCATTTGCAATGTGACAGCCAGTCAGATCACAGTAAGCTGGACGGCCCCAGACTCCCAGCATGCTGTGCAGTGGGGCTTCCTGGTTTGCTGGGGGGATGTAGCTTCAGgccaggagaggagaaggggcgTGGCCAGCAGTTCCAGGTCGACTGTGATTGGAGGACTGGAGGGGTTCAGGAAGTACAGGGTCAGAGTTAACTCCGTCACAGAACATGATGTGGCAAGTAGTGGAGGAACTGACCATACACACTGcgctgAACCCCCCAGGTGGTGTGTATGTTTCTAGCAGAGGGGAGAATCTGACAACGTGTTGGCCGACCCTGTCAGGTGCGTGTGTGTACTTCTGCCGTCACCCAGCAGTGTGAGAGAGGGCTCAGTAACAGAGTCGTCAGTAGAGATGCTTTGGGATCCAGCCCCTGGACATGGACACAACTATGAAGTCATCTGTCTCGACTGTCATCACACGCTTATGGTACttctgtagagtgtgtgtgtgtgtgtttataaagtgtgtgtgcatgtatactGTGTGTATGTGGTCGAGTatctgtataatgtgtgtgtatgtggtcgATTATCAAATCAAGTGCCATGTAGActaagagtgaaatgcttacttaagcaGCATTTTTTGGGCCCTTCCTAACATTGCAAAGAGAAAACaagagaaattatagaaaaataataacaccaGGAATAAATATCCAATGGGTCCAAGCGTaaggacttcaggaaacagcagagggaacacccccttatccacatcgatggaacagtagtggagagggtagtaggttttaagttcctcggcgtacacatcacagacaaactgaattgat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106573433

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051563.1 False 2394 mRNA 0.51 8 34140842 34149017
XR_005051565.1 True 2183 mRNA 0.51 7 34140842 34149017

Neighbor

gene id symbol gene type direction distance location
LOC110532237 LOC106573511 coding upstream 1356 34073768 ~ 34139647 (+)
LOC118966672 LOC106561218 coding upstream 69088 34068653 ~ 34071754 (+)
calub LOC106573432 coding upstream 72731 34064371 ~ 34068111 (+)
LOC110521655 LOC106573426 coding upstream 83014 34046247 ~ 34057828 (+)
LOC110521627 LOC106573440 coding upstream 134814 34004180 ~ 34006028 (+)
LOC110521642 LOC106573425 coding downstream 5528 34154545 ~ 34199822 (+)
LOC110521723 LOC106573431 coding downstream 111570 34260587 ~ 34287836 (+)
LOC110521734 fkbp4 coding downstream 159212 34308229 ~ 34314283 (+)
LOC110521711 b4galnt3 coding downstream 170190 34319207 ~ 34350314 (+)
LOC110521665 LOC106573427 coding downstream 235274 34384291 ~ 34436201 (+)
G35788 NA non-coding upstream 22179 34117916 ~ 34118663 (+)
G35786 NA non-coding upstream 25484 34115098 ~ 34115358 (+)
G35751 NA non-coding upstream 113009 34026127 ~ 34027833 (+)
G35916 NA non-coding downstream 219136 34368153 ~ 34451332 (+)
G36260 NA non-coding downstream 306785 34455802 ~ 34456067 (+)
G36277 NA non-coding downstream 345308 34494325 ~ 34498494 (+)
G36286 NA non-coding downstream 363101 34512118 ~ 34512323 (+)
G36291 NA non-coding downstream 370877 34519894 ~ 34520297 (+)
G35700 NA other upstream 180395 33960060 ~ 33960447 (+)
G35699 NA other upstream 182161 33958097 ~ 33958681 (+)
G34963 NA other upstream 437380 33701777 ~ 33703462 (+)
LOC118964465 LOC106573449 other upstream 740405 33371468 ~ 33402776 (+)
sema3e LOC106573450 other upstream 817237 33268524 ~ 33326523 (+)
LOC110521835 LOC106573423 other downstream 341103 34490120 ~ 34507419 (+)
LOC110521947 LOC106573413 other downstream 615154 34763838 ~ 34808250 (+)
LOC110521950 LOC106573403 other downstream 1075507 35198681 ~ 35281121 (+)
G37450 NA other downstream 1442373 35591390 ~ 35591927 (+)
LOC110522073 LOC106573381 other downstream 1738482 35815461 ~ 35891607 (+)

Expression


Co-expression Network