XLOC_019732 (si:dkeyp-72g9.4)


Basic Information

Item Value
gene id XLOC_019732
gene name si:dkeyp-72g9.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 32476709 ~ 32487084 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038846
AGTGAACTTGATGTTTGTGGCTTTAACAGCACAGTCTCTAATGAAGTCTACATTGACGGCATCATACTAAAAACAGCACCAGATCATCCAACAAACGTGGAAAATACAGAGAAACAGCCTTCAATAACAGTCATGCGTCCCAGGTCCAGACTGCTGGCTAAACGAGGCCTCCCCACCATCAGGGAAGGCTATGAGGAGCTGGTGCAAGACCTGAACCAGACCAACAGCCAGCACACCACCACACAGGACTACTTCCTCTCCATCTGCCATCTGGCCCGGCCCACCTTCCCTCTGCATGAGCCTGATTGTGACATCCTCTCCATCGGCCCTTTGGATTCCCCAAAGCCCTGCCTACGCCTGCATCGCCTGCGCCATCATCTGCAGCCTCCGCAGCCCCAAACCTCCACGGCCAGCGAGCAGATGGTTGAACAGACCCATAAAGAAAAAGAGACCACTAAATCTACTCCAGCAGAAGCAGTTCAGGCTCAGGCTACGCAGAAGGAGGGTGTCCCAGGTCCTGCAGATCCACTAGAGTACCTCTACAGTCACAGAGGTACACCGGCGCTCTCCACCAGAAGAGGGAGCGTTCCTCCACGAAGGCCACGAAGCGACACCTTCCCGTGTTGTTCCTCAGCACCGGAAATCCAGCGCAAGAGCAGCTGCCCAGAGCTTTGCCTGGCTGACACAATCACTGCTTCTACGATCTTGCAGAGGTCGCCTCTCAGCAGGAAGAAGCTGGATGAGGGCACTCTGGCCGCACGCAGTGGCGTTCCCAACAAGCTGGATGGCGCCCCTGCTGGTTGGAAGGGAAAGAGCAGCCGCTGCATGGACAAACAGACCATAGTGTCCCACTGGATCGCAGAGTGCCGCAGCGCATGGAAGGAAGCTCGCATTCGCGCATGCATGCTGCCAGCCATCGCCGAAAAGTAATTTACACTCTCTGTCCAGTGAGGTTTAAACATCACCGTAACGTGGATAAATGTGGAATTATGACTTTGCACTTCAGGTTTATATGCATATacatttttgatgtatttttaaatCCGTGACCCTATAGATGGTGCCGTGTCAATACCACACCATAGTGTAGAGTTACAATGAATGTCGATGATAAGACTGAGCCAGTCCAGTAACGTCCAGTCGTGAACAATAAATGCATTGATTGTTGAATGCCTTTGACATTGTTTAGTGagatttaaagaattaaaaatgtgtCATCTTAATCGCAGTTCGAATATTCAGTAATGTTAATAACACAAAATAGTTTAAAGGATAAAGGGAACAACATGTATAATATTCACTTACAGTAAAAGAATTTCACTGTGCCCACGATAATACCTGACTGGGAGGTTTTTTGTAAAACCCAGGTTTTAGCAAATTTGATTACCAGGCAGCTACTGTGATACACATTAATTATGCAATGCTTGCTTTAAATATTATCACATATTTGATCTATgataaaatgcaaacaaaaatgaaACCTTTAACATACAAATATGTTCAGAACTATTATGTCTAAATATGAACCTTTTAGTACATTGGTACTGTATTTAGGAGACTGGTAAAACGAGCAAGCTATGATCATTTACTGCCACTTTCAAAATGAggtaatgttaaaatattttaaaattaagaagaaaagaaaaacagcatgtaaACAGGAATGAACTGTTtagagcag
>TCONS_00038847
ACTAATCAACACTTGATAAACAGAGTGAACTTGATGTTTGTGGCTTTAACAGCACAGTCTCTAATGAAGTCTACATTGACGGCATCATACTAAAAACAGCACCAGATCATCCAACAAACGTGGAAAATACAGAGAAACAGCCTTCAATAACAGcaGCAGTTGGAGGCTCTGAGCTGAGGCAGGGAGCGGAGGCAGCAGCAGCAGGGAAGAGGAGACCAGACCAGAGGAGCGGAGGAAGAACAGACTCACAGCGACGACAGGCAGCCGGAGAGAGACCCCGCTCAGTCATGCGTCCCAGGTCCAGACTGCTGGCTAAACGAGGCCTCCCCACCATCAGGGAAGGCTATGAGGAGCTGGTGCAAGACCTGAACCAGACCAACAGCCAGCACACCACCACACAGGACTACTTCCTCTCCATCTGCCATCTGGCCCGGCCCACCTTCCCTCTGCATGAGCCTGATTGTGACATCCTCTCCATCGGCCCTTTGGATTCCCCAAAGCCCTGCCTACGCCTGCATCGCCTGCGCCATCATCTGCAGCCTCCGCAGCCCCAAACCTCCACGGCCAGCGAGCAGATGGTTGAACAGACCCATAAAGAAAAAGAGACCACTAAATCTACTCCAGCAGAAGCAGTTCAGGCTCAGGCTACGCAGAAGGAGGGTGTCCCAGGTCCTGCAGATCCACTAGAGTACCTCTACAGTCACAGAGGTACACCGGCGCTCTCCACCAGAAGAGGGAGCGTTCCTCCACGAAGGCCACGAAGCGACACCTTCCCGTGTTGTTCCTCAGCACCGGAAATCCAGCGCAAGAGCAGCTGCCCAGAGCTTTGCCTGGCTGACACAATCACTGCTTCTACGATCTTGCAGAGGTCGCCTCTCAGCAGGAAGAAGCTGGATGAGGG
>TCONS_00038848
AATCAACACTTGATAAACAGAGTGAACTTGATGTTTGTGGCTTTAACAGCACAGTCTCTAATGAAGTCTACATTGACGGCATCATACTAAAAACAGCACCAGATCATCCAACAAACGTGGAAAATACAGAGAAACAGCCTTCAATAACAGCAGTTGGAGGCTCTGAGCTGAGGCAGGGAGCGGAGGCAGCAGCAGCAGGGAAGAGGAGACCAGACCAGAGGAGCGGAGGAAGAACAGACTCACAGCGACGACAGGCAGCCGGAGAGAGACCCCGCTCAGTCATGCGTCCCAGGTCCAGACTGCTGGCTAAACGAGGCCTCCCCACCATCAGGGAAGGCTATGAGGAGCTGGTGCAAGACCTGAACCAGACCAACAGCCAGCACACCACCACACAGGACTACTTCCTCTCCATCTGCCATCTGGCCCGGCCCACCTTCCCTCTGCATGAGCCTGATTGTGACATCCTCTCCATCGGCCCTTTGGATTCCCCAAAGCCCTGCCTACGCCTGCATCGCCTGCGCCATCATCTGCAGCCTCCGCAGCCCCAAACCTCCACGGCCAGCGAGCAGATGGTTGAACAGACCCATAAAGAAAAAGAGACCACTAAATCTACTCCAGCAGAAGCAGTTCAGGCTCAGGCTACGCAGAAGGAGGGTGT

Function

symbol description
si:dkeyp-72g9.4 Predicted to be involved in regulation of autophagy. Predicted to be active in mitochondrion. Is expressed in nervous system; neural tube; and trigeminal placode.

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-031204-23 Predicted to be involved in regulation of autophagy. Predicted to be active in mitochondrion. Is expressed in nervous system; neural tube; and trigeminal placode.

Ensembl:

ensembl_id ENSDARG00000073704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038846 False 1681 mRNA 0.45 2 32476709 32487061
TCONS_00038847 False 901 mRNA 0.56 3 32477644 32487084
TCONS_00038848 True 658 mRNA 0.55 3 32477881 32487081

Neighbor

gene id symbol gene type direction distance location
XLOC_019731 zgc:123105 coding downstream 8910 32454896 ~ 32467799 (-)
XLOC_019730 gfpt2 coding downstream 40030 32390707 ~ 32436679 (-)
XLOC_019729 mapk9 coding downstream 102053 32349190 ~ 32374656 (-)
XLOC_019728 clk4b coding downstream 175600 32280175 ~ 32301109 (-)
XLOC_019727 NA coding downstream 198367 32126914 ~ 32278342 (-)
XLOC_019733 adamts2 coding upstream 21824 32508908 ~ 32684570 (-)
XLOC_019734 NA coding upstream 168873 32655957 ~ 32660440 (-)
XLOC_019735 cnot6a coding upstream 270517 32757601 ~ 32781612 (-)
XLOC_019736 slc34a1b coding upstream 519566 33006650 ~ 33032716 (-)
XLOC_019737 zgc:194629 coding upstream 571541 33058625 ~ 33090204 (-)
XLOC_019722 CR450753.1 non-coding downstream 1138924 31337670 ~ 31337785 (-)
XLOC_019714 BX936320.1 non-coding downstream 1588335 30886127 ~ 30888374 (-)
XLOC_019712 NA non-coding downstream 1682119 30792655 ~ 30794590 (-)
XLOC_019709 NA non-coding downstream 1818149 30651065 ~ 30658560 (-)
XLOC_019739 CU019662.2 non-coding upstream 649864 33136948 ~ 33137083 (-)
XLOC_019740 NA non-coding upstream 658168 33145252 ~ 33146525 (-)
XLOC_019742 NA non-coding upstream 978191 33465275 ~ 33477963 (-)

Expression


Co-expression Network