LOC110521835 (LOC106573423)


Basic Information

Item Value
gene id LOC110521835
gene name LOC106573423
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34490120 ~ 34507419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599749.2
TCTCTCTGGAGCATATCAGCTGACTGACAGCGCGCTGACCCAAATTGACGCATTGCGTATGACGTTTCCACCCGGCTTGTCTTCTCTCGTTTCCTTTCATCCGCaggtctttctctgtgtgtagcCCTAGATAGATAGCATAATGGCCAACGTTGTGGATACCAAACTATACGACATCCTCGGAGTCTCACCCTCCGCTTCCGAAAACGAGCTAAAGAAGGCATACCGCAAGTTGGCCAAAGAGTACCACCCTGATAAGAACCCAGATGCCGGGGACAAGTTTAAGGAGATCAGTTTTGCTTATGAGGTGCTGACCAATCCAGAGAAGAAGGAGCTGTATGATCGCTATGGAGAGCAGGGGCTgcgggagggaggtggtggaggggctGGCATGGACGACATCTTCTCCCACATCTTTGGAGGGGGGCTGTTTGGCTTTATGGGGGGGCAGGGACGTGGAGGGGGAGGACGCAACGGGGgacgcaggagaggagaggacatggtgcACCCCCTCAAAGTATCACTGGAAGACCTCTACAATGGTAAAACAACCAAACTACAGCTCAGCAAGAATGTCCTGTGTGCTTCCTGCAATGGTGCGGGGGGTAAGGCGGGGGCAGTGCAGAAGTGTGTGGCCTGCAGAGGGAGAGGCATGAGGATCATGATCAGACAGCTGGCTCCTGGCATGGTCCAACAGATGCAGTCAGTCTGCACAGACTGCAACGGAGAGGGGGAGGTGATCAGTGAGAAGGACCGTTGTAAGAAGTGTGAGGGTCGTAAGGTGAACAAGGAGACCAAGCTGTTGGAGGTCCATGTTGATAAAGGCATGAAACACGGCCAGAAGATCAGCTTCACAGGAGAGGCTGACCAGGCCCCAGGCACTGAGCCTGGAGACATACTACTTGtcctacaggaaaaggagcatgAGGGGTTCCGTCGTGACGGCCATGACCTTCACATGACGCAGCGTATCGGCCTGGTGGAGGCTCTGTGTGGCTTCCAACTGGCAGTCACACACCTCGACGGACGCCAGCTCGCTGTCAAATATCCCCCCGGCAAGGTTATAGagccaggttGTATCCGGGTGGTGAAGGGAGAGGGGATGCCTCAGTACAGGAACCCATTTGAGAAGGGAGATCTGTTCATCAAGTTTGACGTCCAGTTCCCTGAAAACAACTGGATCAGTCCTGAGAAACTCTCTGAGTTGGAGGATCTGCTGCCAGGGCGTACGGAGGTTCCAGTTATCTCATCGGAGGCGGAAGAGGTTGACCTCCAGGActgtgaggtcagaggtcagggttcaGCGGGGGCCAGGAGAGAGGCCTACAATGACAGCTCTGATGAGGAGGGTGGACCACATGGCCCAGGGGTACAGTGTGCCCACCAGTAGACTGAATACATACACACCCTTCTCTCACTGGTCTGTGTGCCCATCTGTTGAGTACTCTGAGGGAAGGGCACCCCTCCACTGCCCCGCCCCCAGGTCCCATCAGGACCCTCAATCCTCTTCATTCCTCCATCAgccaatcagtgtgtgtgtttgagtgtggtcAGCAGGCTGTGATGGATGTTTAGTGGCCATTTGACATCTTAGGTTTGTAGGCTCTACATCTGTCTGGAAACGTTGTCATTTGGGAACCTTGTGTACAAAATGAAAATATTGTCTAGTGAAATTATTAATTTATCTTCTAACAGGCTTCAGTGTCGTAGTCTAGTCTTAGTCACACACCAGCGCATGCTGAAAACACATTTAACACAGACCTACCATAGCCCCTGGTCTACACGGCGGCCTGCTGAGCCACACAGAAAGCTATTTTATTGCTTCCTGTAAGCTCAAACGTCTCCCATCGCTGAGGCACCTCGGGACTACCTGGTCAGATTTCTCTCCACCAATAAAATAGCTTGAATCTTTAGGCTTATTTACCTTTGTCAGAAAACAACATGTTTCTCTTCTGTGTGAGGATTGTGCTTTTGCGCATGTGTGCGTGTGACCACAGAGCTTGTGTCTTGAGTAGCATACTCtaaactgagtgtgtgtgtgtgcgcgcgcgcgtgtgatTTAGGAGCTGGGTGTGTGTGAGCTGCTGTAGAATGTTCTGGCTTCTCTGCTCATAACGGTTTGTGTTCTGTGTGTATCGCCAATGTGAGTGGAGACCTCGTTTTATGTTCAATTAAAGATAAAAACAATTGAATGTGTTGAACTTCTCTCCCACCTTGACCATGTAACATTTAGCCCCTAACCTCGCATTATACACAACTTTCCATGCCAGTACAACCGTCACACATGCCATCTCAACTTCCATTCCCTTAGCTCTGTAAATACCAACCCCAGCCCCTGTGCACGGTCACATCTCAATACTCTACAGTTGCCTCCTTCCCTCCTATCCAAATTCCTGTTCTTCGTCTGCACTGATGGGACAAGACAGCATGGTCATGGTCAGTTGGCACAAATGTTTTGGAACACTACCTGGAAAAACAATAATTTCCTGTTTGAACATTTTGCATTAGTGTGCACTATTGAACATGATCCAGGTGAAAGCAGCATGGTTTACTAGGCCACACATGGATTTCCTTTCTCATGTCGTTCTGTCAGATCAGTACAGATGGAGTGGATAGGAGGCTACTTTAAACTGTAGAGATGTAGTCATCTGACTGTCACTGTATATATGCTATATAGGCCACTGGAGGGACACGCTACAGACAGGGGCTTTATTTAGTAAATGATGTTATTATTGTTGATGATGCTCATGTTTGTTAGGATGACAATTAAACTGTATAATAAACTGTCACCA
>TU40998
CCAAATCTGTAACTGTTAGCCTAGAGATAATGCTATACAGATACATATGTATGTCCTCATCATCTCTGCTATCTCTCTGGAGCATATCAGCTGACTGACAGCGCGCTGACCCAAATTGACGCATTGCGTATGACGTTTCCACCCGGCTTGTCTTCTCTCGTTTCCTTTCATCCGCaggtctttctctgtgtgtagcCCTAGATAGATAGCATAATGGCCAACGTTGTGGATACCAAACTATACGACATCCTCGGAGTCTCACCCTCCGCTTCCGAAAACGAGCTAAAGAAGGCATACCGCAAGTTGGCCAAAGAGTACCACCCTGATAAGAACCCAGATGCCGGGGACAAGTTTAAGGAGATCAGTTTTGCTTATGAGGTGCTGACCAATCCAGAGAAGAAGGAGCTGTATGATCGCTATGGAGAGCAGGGGCTgcgggagggaggtggtg
>TU40996
TTTCCACCCGGCTTGTCTTCTCTCGTTTCCTTTCATCCGCaggtctttctctgtgtgtagcCCTAGATAGATAGCATAATGGCCAACGTTGTGGATACCAAACTATACGACATCCTCGGAGTCTCACCCTCCGCTTCCGAAAACGAGCTAAAGAAGGCATACCGCAAGTTGGCCAAAGAGTACCACCCTGATAAGAACCCAGATGCCGGGGACAAGTTTAAGGAGATCAGTTTTGCTTATGAGGTGCTGACCAATCCAGAGAAGAAGGAGCTGTATGATCGCTATGGAGAGCAGGGGCTgcgggagggaggtggtg
>TU40997
tagcCCTAGATAGATAGCATAATGGCCAACGTTGTGGATACCAAACTATACGACATCCTCGGAGTCTCACCCTCCGCTTCCGAAAACGAGCTAAAGAAGGCATACCGCAAGTTGGCCAAAGAGTACCACCCTGATAAGAACCCAGATGCCGGGGACAAGTTTAAGGAGATCAGTTTTGCTTATGAGGTGCTGACCAATCCAGAGAAGAAGGAGCTGTATGATCGCTATGGAGAGCAGGGGCTgcgggagggaggtggtg

Function

NR:

description
dnaJ homolog subfamily A member 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599749.2 False 2792 mRNA 0.50 9 34490191 34507419
TU40998 False 451 TUCP 0.36 3 34490120 34491759
TU40996 False 316 TUCP 0.51 3 34490255 34491759
TU40997 True 259 TUCP 0.42 3 34490312 34491759

Neighbor

gene id symbol gene type direction distance location
LOC110521665 LOC106573427 coding upstream 53990 34384291 ~ 34436201 (+)
LOC110521711 b4galnt3 coding upstream 139877 34319207 ~ 34350314 (+)
LOC110521734 fkbp4 coding upstream 175908 34308229 ~ 34314283 (+)
LOC110521723 LOC106573431 coding upstream 202355 34260587 ~ 34287836 (+)
LOC110521642 LOC106573425 coding upstream 290369 34154545 ~ 34199822 (+)
LOC110521853 LOC106573522 coding downstream 28588 34536007 ~ 34547546 (+)
LOC110521870 LOC106573420 coding downstream 43829 34551248 ~ 34558855 (+)
zgc:77752 LOC106573521 coding downstream 71868 34579287 ~ 34586901 (+)
LOC110521894 NA coding downstream 103896 34611315 ~ 34616565 (+)
LOC110521897 NA coding downstream 111618 34619037 ~ 34620127 (+)
G36260 NA non-coding upstream 34124 34455802 ~ 34456067 (+)
G35916 NA non-coding upstream 38859 34368153 ~ 34451332 (+)
LOC110532237 LOC106573511 non-coding upstream 350544 34073768 ~ 34139647 (+)
G35788 NA non-coding upstream 371528 34117916 ~ 34118663 (+)
G35786 NA non-coding upstream 374833 34115098 ~ 34115358 (+)
G36286 NA non-coding downstream 4699 34512118 ~ 34512323 (+)
G36291 NA non-coding downstream 12475 34519894 ~ 34520297 (+)
G36294 NA non-coding downstream 14810 34522229 ~ 34522521 (+)
bend7 bend7 non-coding downstream 27042 34534461 ~ 34630438 (+)
G36303 NA non-coding downstream 37300 34544719 ~ 34545022 (+)
G35700 NA other upstream 529744 33960060 ~ 33960447 (+)
G35699 NA other upstream 531510 33958097 ~ 33958681 (+)
G34963 NA other upstream 786729 33701777 ~ 33703462 (+)
LOC118964465 LOC106573449 other upstream 1089754 33371468 ~ 33402776 (+)
sema3e LOC106573450 other upstream 1166586 33268524 ~ 33326523 (+)
LOC110521947 LOC106573413 other downstream 256752 34763838 ~ 34808250 (+)
LOC110521950 LOC106573403 other downstream 717105 35198681 ~ 35281121 (+)
G37450 NA other downstream 1083971 35591390 ~ 35591927 (+)
LOC110522073 LOC106573381 other downstream 1380080 35815461 ~ 35891607 (+)
LOC110522113 LOC106573380 other downstream 1426758 35922982 ~ 35938680 (+)
G36277 NA non-coding downstream 2566 34494325 ~ 34498494 (+)

Expression


Co-expression Network