LOC110521897


Basic Information

Item Value
gene id LOC110521897
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34619037 ~ 34620127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473232.2
TAGAGTAGGCTGCCTATGCATGGGCGGAGAAGCACGGGGCAGTTAGCTTTCATAGGACATGTACTTCCTACATATGATTAggctatagtttactacattgcCTAGAAATAAATATTGATCACGCATATTTGGatactggatgctgattggctaaaacagCATTTAGCTGTGTGTGAGACGGTATACCATGACTTTGACTGTTTAGGCTTGTCACCTTGATATCGTTGCGCCTTTTCACGTCGATAAAATGGCAACATCAACAATAGTTCGACATGCCGGTGTAGAAAATAAGCCTTTCGATCAACTTCATAGAAACCGAAACAAACTAAATGGGCACTTTCCTGCTTCACTGACTGGTGTGCAGAACATGGGATACATTGTGAGTTTGGGAATACAACTAAAACGGAACCGAACGTCATTCTATGCTACTTTCATGGTTTTGTGAGAAACATGTATGGCGAATAATATAGGATTAGCAGCTAACGTTACGCTGGACTCTGAGCTGGTTTGAGCCGAGACATCAACGACCCCCCTTAGTCTGGAATGGAGTAGACAGAAGGACACCAAATTCACAACGAGCAACCAACAATGTGTCTGTCGGCGTAATTAAAAAGTTGAGGAAAGAGGGGCTCAGCAAAGCTGCCCACCAGTGAACTGATACATATGTACACAAAAGACGAGCCGATGGGAGTGACCACCCTCACCCCTGCAAAATACCTGTCCCGTCGCAGATTTAAACAAACCACTGCCTCCGAACCACCGTGGTTCAGAAACTGTCGGGTGATCaatggcgacccgtcattcaggacAGGTGGAgcagccccacctgttttgaccgacacactttttttttatttttagggggtgcggggcttgcctgttttgcttgttattttggcattaatatgttatatcagtttgcaaacaatgtaacaaaaaaaaatgtaattgagttaataaagccgcatacaaacat
>TU41083
ATGGCAACATCAACAATAGTTCGACATGCCGGTGTAGAAAATAAGCCTTTCGATCAACTTCATAGAAACCGAAACAAACTAAATGGGCACTTTCCTGCTTCACTGACTGGTGTGCAGAACATGGGATACATTGTACACAAAAGACGAGCCGATGGGAGTGACCACCCTCACCCCTGCAAAATACCTGTCCCGTCGCAGATTTAAACAAACCACTGCCTCCGAACCACCGTGGTTCAGAAACTGTCGGGTGATCaatggcgacccgtcattcaggacAGGTGGAgcagccccacctgttttgaccgacacactttttttttatttttaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473232.2 False 976 mRNA 0.44 2 34619037 34620127
TU41083 True 330 lncRNA 0.40 2 34619284 34620014

Neighbor

gene id symbol gene type direction distance location
LOC110521894 NA coding upstream 2472 34611315 ~ 34616565 (+)
zgc:77752 LOC106573521 coding upstream 32136 34579287 ~ 34586901 (+)
LOC110521870 LOC106573420 coding upstream 60182 34551248 ~ 34558855 (+)
LOC110521853 LOC106573522 coding upstream 71491 34536007 ~ 34547546 (+)
LOC110521835 LOC106573423 coding upstream 111618 34490120 ~ 34507419 (+)
bend7 bend7 coding downstream 2299 34534461 ~ 34630438 (+)
LOC110521911 LOC106573416 coding downstream 12863 34632990 ~ 34647005 (+)
LOC110521947 LOC106573413 coding downstream 143711 34763838 ~ 34808250 (+)
LOC118964549 shank3 coding downstream 486833 35106960 ~ 35178445 (+)
LOC110521950 LOC106573403 coding downstream 578554 35198681 ~ 35281121 (+)
G36303 NA non-coding upstream 74015 34544719 ~ 34545022 (+)
G36294 NA non-coding upstream 96516 34522229 ~ 34522521 (+)
G36291 NA non-coding upstream 98740 34519894 ~ 34520297 (+)
G36286 NA non-coding upstream 106714 34512118 ~ 34512323 (+)
G36277 NA non-coding upstream 120543 34494325 ~ 34498494 (+)
G36341 NA non-coding downstream 10865 34630992 ~ 34631231 (+)
G36344 NA non-coding downstream 21428 34641555 ~ 34691022 (+)
G36362 NA non-coding downstream 73846 34693973 ~ 34694188 (+)
G36651 NA non-coding downstream 188953 34809080 ~ 34809306 (+)
G36654 NA non-coding downstream 190496 34810623 ~ 34810839 (+)
G35700 NA other upstream 658590 33960060 ~ 33960447 (+)
G35699 NA other upstream 660356 33958097 ~ 33958681 (+)
G34963 NA other upstream 915575 33701777 ~ 33703462 (+)
LOC118964465 LOC106573449 other upstream 1218600 33371468 ~ 33402776 (+)
G37450 NA other downstream 971263 35591390 ~ 35591927 (+)
LOC110522073 LOC106573381 other downstream 1267372 35815461 ~ 35891607 (+)
LOC110522113 LOC106573380 other downstream 1314050 35922982 ~ 35938680 (+)

Expression


Co-expression Network