LOC118964549 (shank3)


Basic Information

Item Value
gene id LOC118964549
gene name shank3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35106960 ~ 35178445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976593.1
aTCAGCATCCTGTGAAATCCCTCCTCCATTTCTCGTTTGGTCTGTGTAAGCGCGTGAGTGAGAGTGTgggtgagcgtgtgtgtgagcgtgtgagtgagagtgtgtgcatgtgtgtgtgcctctaCTACTCTGACAGGATATGAGCGGATgagtgagggagtgtgagagaggagggaagccacggagagaagaggaaagagaggaggaaaggagaagagaggaggagaggagaagagaaagggggaCTGGATATGGCCATGTGCAGGATGTTTTGACGTTGGGACTGTAGTTGATCTTTGGCGGTGTGTGAGTGAGGGTGTGAGCCAGAGTTTGTGtaagtgtgagtgtgcgtgtgtgtgtgtgagatggggTCTGCTCTGGGCAGAAGAGAGGAAGCtgaaagaaaggagaggaaggcaAGAGAAGCCAGGAAAGCCAAACTCAATAGTAAGgcgAACCTGAAGAAGTTTATGGAGTATGTTCAGCAGAGGAACATTGAGAAGGTGTCCAAATTCCTGGAGAAAGGTCTGGACCCCAACTTCCACGACCCTGAATCGGGAGAATGTCCTCTGACCATGGCATCTCAGCTGGAGGGCTGTGCAGACCTCATCAAGGTGCTGAAGAGTGGAGGAGCTCACCTGGACTTCAGGACCCAAGACGGCATCACTGCCCTGCACAAGGCTGTCCGCACCAAGAACCATACAGCGCTCATAACGTTGCTGGACCTGGGTGCGTCTCCTGACTATAAGGACAGTCGAGGGTTAAGTCCGCTCTATCACAGCTCTATGGTAGGAGGAGACCCCTACTGCTGTGAACTTCTGCTCCACGACCACGCTCAGGTGGGCTGTGTGGACGAGAACGGATGGCAGGAGATAcaccagGCGTGTCGTCATGGTCACGTTCAGCACTTGGAGCACCTGCTGTTTTACGGAGCTGACATGGCTGCCCAGAACGCCTCTGGAAACACCGCCCTGCACGTCTGTGCCCTCTACAACCAGgATAGCTGTACCAGAGTTCTACTGTTTCGGGGAGTGAATAAAGAGATCAAGAACTACAACAGCCAGACGGCCTTTCAGgTTGCCATTATAGCAGGAAACTTTGACCTGGCCGAAATCATTAAGATCCACAAAGTGTCAGACGTTGTGCCTTTCAGGGAGACCCCCTCCTACACTAACCGTAGACGTGTGTTGGTGGGAGGACTGCCCTCGCCCCGCTCCCTTCTGCGCTCCGCTAGCGACAACAACCTCAACGGGGAGAGCGTTCACGGTCTGGGGCAGGGCCTGCGGCAGGGTCACGGTCGACAGGgtcagtctcctgtcccctctctgaGGAGCCTGCCTGCACTGGGACAACACCAACAACACGCCAGCCTGGgggagACTCATCATGGAGAGGTGCCAGACAGCAGTCTCCAGAGCACAGGCAGCTCTCGCTCCTCCCACTCCCGCTCTCCCTCGCTACACAGTCATCTGCATGAGGGCGATCAGAGCGTCAGGAGGACACACGGACACGCTCTGGGACATGTCCATCGAGGACGCCTCAGGTGAGAcggacaatcaatcaatcatatatCGAATACCTTGGGGGACATTGAactgtgctgttgt

Function

symbol description
shank3 Predicted to enable several functions, including SH3 domain binding activity; ionotropic glutamate receptor binding activity; and protein C-terminus binding activity. Involved in several processes, including social behavior; vocal learning; and vocalization behavior. Predicted to be located in ciliary membrane and neuron spine. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Predicted to be active in dendritic spine; glutamatergic synapse; and postsynaptic density, intracellular component. Predicted to colocalize with postsynaptic membrane. Implicated in Phelan-McDermid syndrome and schizophrenia 15.

NR:

description
SH3 and multiple ankyrin repeat domains protein 3-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976593.1 True 1607 mRNA 0.55 9 35106960 35178445

Neighbor

gene id symbol gene type direction distance location
LOC110521947 LOC106573413 coding upstream 298710 34763838 ~ 34808250 (+)
LOC110521911 LOC106573416 coding upstream 459955 34632990 ~ 34647005 (+)
bend7 bend7 coding upstream 476522 34534461 ~ 34630438 (+)
LOC110521897 NA coding upstream 486833 34619037 ~ 34620127 (+)
LOC110521894 NA coding upstream 490395 34611315 ~ 34616565 (+)
LOC110521950 LOC106573403 coding downstream 20236 35198681 ~ 35281121 (+)
LOC118966681 NA coding downstream 184370 35362815 ~ 35365674 (+)
LOC110521975 LOC106561266 coding downstream 204288 35382733 ~ 35435548 (+)
LOC110521983 LOC106573386 coding downstream 531379 35709824 ~ 35731063 (+)
LOC110522032 LOC106573385 coding downstream 574894 35753339 ~ 35767069 (+)
G36882 NA non-coding upstream 17133 35089545 ~ 35089827 (+)
G36881 NA non-coding upstream 18228 35088504 ~ 35088732 (+)
G36877 NA non-coding upstream 24452 35082255 ~ 35082508 (+)
G36864 NA non-coding upstream 41663 35065079 ~ 35065297 (+)
G36863 NA non-coding upstream 42167 35064592 ~ 35064793 (+)
G37015 NA non-coding downstream 102871 35281316 ~ 35282847 (+)
G37390 NA non-coding downstream 250784 35429229 ~ 35429457 (+)
G37370 NA non-coding downstream 258465 35436910 ~ 35440011 (+)
LOC110521835 LOC106573423 other upstream 615201 34490120 ~ 34507419 (+)
G35700 NA other upstream 1146513 33960060 ~ 33960447 (+)
G35699 NA other upstream 1148279 33958097 ~ 33958681 (+)
G34963 NA other upstream 1403498 33701777 ~ 33703462 (+)
G37450 NA other downstream 412945 35591390 ~ 35591927 (+)
LOC110522073 LOC106573381 other downstream 709054 35815461 ~ 35891607 (+)
LOC110522113 LOC106573380 other downstream 755732 35922982 ~ 35938680 (+)
rad52 rad52 other downstream 955087 36133477 ~ 36140940 (+)

Expression


Co-expression Network