LOC110521966 (rabl2a)


Basic Information

Item Value
gene id LOC110521966
gene name rabl2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35281285 ~ 35285817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599989.2
TATTTTCAGCCAATAATAGGAAGCATCATCTTTAAAAAAGTGGGCCTTCACGCGTCAGCGTTGCATAGAAACAGACTTTCTCTATGGAAGCCGTTGCTACAAGAACATGAATATATATTTTCAGGCAATAATAGGAACAGCCACGTTAAAAAAGGGGGCCTTCAAGCGTCTGCGTTGCATAGAAACAAACATTTTCTATAGAAGCTGTTGTTACAAGAacatgctagctaactagctacaatgTTTTGACGTTTTTCCATCGATAGCTACGTTAATGTTTTGATGCTTATTTTGCTAGACCATTGACAGCTAAATAGGGTTGTTAGATATAGCCAAACATCAAATGTCCCTGACTGGATGTAACGTTAAGCATTAGCTACATTTTATCTACAGTTAACTAGTTAGATAAGTCAAGTAGCCACTGGCTAGATAACCAACGAGTTGAAAACATAACGTTACCCGTTTCGCTAGTTTAGCTAATAAGTTAGTTTAGACATATGACTTCGAATGGGGTTGAGTCATATTTTAAGTGAATAACTTAACAGTTACATGCCAATGTGTGTCGCGATAACGTTAAGCGGTTTAATTTAGCTAGCTCAGGAGCTAGCGTTAGTGTAATCACAGACTAAGTGTATTCGGTCATCTTGttcctagctaaagttagctagctatctagttgGAAGTTAACTAAGCCGCTGTGCGACGCAGCTGATTTCCCCATCCCGAAGGAAGGATGGCAAGCGACGCCAATGGCATTCCTGAACTGGACCAAGATAAATATGATGCAGATGAACAAGTGAAGATCATCTGCCTTGGGGACAGTGCAGTGGGGAAATCCAAGTTGATGGAGAGGTTCCTGATTGACGGATATCGTCCCCAGCAGCTGTCAACCTATGCTCTGACACTCTACAAATACAATACCACCATTGACAGAAAGGCTGTATTAGTAGACTTCTGGGATACTGCTGGACAGGAGCGGTTCCAGAGCATGCATCCCTCGTACTACCACAAAGCTCACGCCTGTATCATGGTGTTTGACGTGCAGAGGAAGATCACCTATAAGAACCTGACCAATTGGTACACAGAGCTGAGAGAGTACAGGCCTGAGATCCCCTGCGTTGTGGTGGCTAACAAGATAGATGCTGATATGAAGGTGACCCAGAGGAACTTTAACTTTGCCAAGAAGCAGGGACTTCCTTTGTACTTTGTATCAGCTGCTGATGGGACCAATGTGGTCAAGATGTTTAAAGAAACAATCAAGATGGCGATGTCGTACAAGCAGAACTCTAGTGACTTCATGGATGAAGTGATGCGGGAGCTAGAGAACTTTGAGCTGGAGCAGAACAAGGATTTGTCGTTACAGACGGCTCAGAAGGGACTGAAACCAGAGAGCTCGGAGTCTGTCTGACTGGATGTTGATACATTATCCTCACGTTATCTTTACATTATACTGACGTTGTGAACACAAGCTCTGATTTGGACTACAGTGCAGCTATGGACACTGGATATGTTATCCAGATAGTGTTGACGTTTTACTAGTCTACCATGGGAGAGCCTTGCTCCTGAATACCTGACGTTGTGGATATGTTATATTCATGTTATTCTCACTTTGTGGAAATGTTATCCTTACATTCTCCTCATGTGTGTATTTTATGCCATGAGAGAGCCATGCTTCTGTGGGACTGATGCTATGGAAATGTGAACCTTTGACCCATATAATAATAGTGACCTGTGAGAACTGGGGAAATCTATTGATGTGAGAACAAACATACTGTAGGAAACATGTTGTCAGGCAGGTGAAATGTCTGCATAAGTGTGTGAAGCAGGCTTGTTATTTGAGGTGAACTAGAATGTGAAGCTTTGTAAAATGTGGGGCACACACAATACTTATCATTCCTATTTGGGCTATTTTTGGAGAGCAAAGTGAAACTGTGAATGTGAACTCTCTTTGCCACTTGTGATTTTGTCATCAGCTTTTGCTCTCTGAGGCTTTTACATGAGGATTTGTTCAATGTAAGGTGATAGTGGGGTACATGTATGTAAAGGCTGCTGTTGTTGCTCTTAAGTGCTACAATGTAAAGCCAGAGCTTTTATGCCATGTCTTTTAATGTATTTTAAACAATGAATGTACCTTGTAACCATGTGACGGCACTAGCGACTGTTAGATATTTCAGTGTGGTTTCAAACCTCAGTACTTGCTACCTGACATGGCTAGGCTGCATCAATGTCACCAGTAATTAATTCCAGTGCAGTTATCGATCAATGTACAAGTTagatatacgtgtgtgtgtgtgtatatatatatatatatatatatatatgatagtcAACTGGAAGTGTTGCAGAAGTACTGAAGATAGCTCAGAACTACAATGACTGACCACTTCTGAGAGGTTCACAATCTAGGTGTAGTAGAACTCCAAGGCCTGTATTCTATGTCACTGAAGTGTTAGAATGCCTTCATGTTTAAATCACTCGGAACTCCTGCAAtatggattgaatagagcccttaatgTTCTCTGTGGAAAatccacattttttaaaatctgtaTGATATCCTATGAACTGCGATTTAAAAAAAGGATCATTTCAAGACATACTATGTCTATTTGATGTGCTTCCCTCAGGGTATTAACCCTGGTTATTAGTGGAATTTCAACCTccaataaataaacattttataATCACAGCTCAAATGTACACAATCAATTATTTGGAAA

Function

symbol description
rabl2a Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system.

NR:

description
rab-like protein 2A isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599989.2 True 2720 mRNA 0.41 8 35281285 35285817

Neighbor

gene id symbol gene type direction distance location
LOC118947385 NA coding downstream 412990 34856461 ~ 34868295 (-)
zp2.3 zp2.3 coding downstream 590326 34686750 ~ 34690959 (-)
LOC110521923 LOC106573414 coding downstream 616814 34659087 ~ 34664471 (-)
cpt1 cpt1 coding downstream 621132 34647385 ~ 34660153 (-)
LOC110521764 LOC106573421 coding downstream 791106 34473968 ~ 34490179 (-)
odf3b odf3b coding upstream 724 35286541 ~ 35287452 (-)
LOC110520384 LOC106573404 coding upstream 28136 35313953 ~ 35316192 (-)
LOC110532260 NA coding upstream 148978 35433794 ~ 35694776 (-)
LOC110522006 LOC106573384 coding upstream 456833 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 464488 35750305 ~ 35753348 (-)
G37196 NA non-coding downstream 169990 35110630 ~ 35111295 (-)
G37184 NA non-coding downstream 189910 35091116 ~ 35091375 (-)
G37181 NA non-coding downstream 196059 35084985 ~ 35085226 (-)
G37180 NA non-coding downstream 196365 35084576 ~ 35084920 (-)
G37178 NA non-coding downstream 198310 35082632 ~ 35082975 (-)
G37322 NA non-coding upstream 13516 35299333 ~ 35299619 (-)
G37323 NA non-coding upstream 14361 35300178 ~ 35300431 (-)
G37329 NA non-coding upstream 27002 35312819 ~ 35313055 (-)
G37901 NA non-coding upstream 138423 35424240 ~ 35424504 (-)
G37310 LOC106573403 other downstream 3280 35273709 ~ 35278005 (-)
G36196 NA other downstream 900053 34341562 ~ 34381232 (-)
G36141 NA other downstream 918549 34277700 ~ 34362736 (-)
G35628 NA other downstream 1413240 33867558 ~ 33868045 (-)
G35299 NA other downstream 1828872 33442368 ~ 33452413 (-)
G37907 NA other upstream 155101 35440918 ~ 35441328 (-)
G37976 NA other upstream 297475 35583292 ~ 35583608 (-)
G38045 LOC106573386 other upstream 435623 35721440 ~ 35722056 (-)
LOC110522187 LOC106573361 other upstream 1084277 36370091 ~ 36409064 (-)
G38855 NA other upstream 1222721 36508538 ~ 36510829 (-)

Expression


Co-expression Network