LOC110520384 (LOC106573404)


Basic Information

Item Value
gene id LOC110520384
gene name LOC106573404
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35313953 ~ 35316192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973693.1
ggctgctgtgtgttctTTTACTGACTGGGATCATAGGCCTTTGTGCCCACTGTGAGTTTACCCAGTTTTACATCATTAATAGTCAGGTTGTTTTAGTGTGATTATTTTGGTCATTGCTTTTTATGTTTCTTTGCAGACAACAGAGTGGCAAGTGACTTTGAGGAGGAGCAGACTAAGCTattgacagagacagaccagcTGAAGGGGGAGATAGTTATCCTTCAAAATAAATGATTGTTTATGGAGCATCATTTTAAAATGGGATGGCGTCATTTTGGATCCAGTTTTTACCTCTTCTTCACTGTGGAGAAGACTTGGGAGCAGAGCAAACAGGACTGTGTAGGGAGTGGAGCCGACCTGGTGATCATAGACAGCAGAGAGGAacagAATTGTATCAGTGGATTCAATGGGATGTTCTGGATTGGTCtgtctgacagagagacagaggggtcatGGAAATGGGTGGATGGAACACCACTGACCAtagaGTACTGGAAGAGTGGAGAGCCTAACAGTTACGGCGGTGAAGAGGACTGTGCTGAGAGAAGCTTAATTTATTCTAACACAGAGCAGAGCTGGAATGATGTAGCATGTGGTCAACTGAAGTTAGGGATCTGTGAGAAAGTGGCTTATCCGTAACTCAAACTGCACATATAACTGCATTCAAACTGCATTCTTTTCTTTTCATTTTTCATGAACCATcaagtaatatactgtatatgtttttttttacaactccTGCTTGGACTATTGCATACAATTATTAGATTATCATTTCAATTATAATTTTGATTAATTATATTTCCCCAttgtttaaataaatatatatatatatatcaatgccTAATTAGCTTAGTGCAGCTGCTATTACCCTATAATAACCCCAACATGTTATTTTACTTTGTTTTGTTGTCATTTGAGTCTTTTTATATCTTATACCAAAAGTATGGATGTATGACTCCTCCACTTGTTTCCAGGTTTCCAAATAA
>XM_036973075.1
CCTGCTAAGCTGTACCACAGTAAGCTGTAAATCATGTATTGTATCCTCAGCAAAGAGTAACCACCTCAAAGACAACAGAGTGGCAAGTGACTTTGAGGAGGAGCAGACTAAGCTattgacagagacagaccagcTGAAGGGGGAGATAGTTATCCTTCAAAATAAATGATTGTTTATGGAGCATCATTTTAAAATGGGATGGCGTCATTTTGGATCCAGTTTTTACCTCTTCTTCACTGTGGAGAAGACTTGGGAGCAGAGCAAACAGGACTGTGTAGGGAGTGGAGCCGACCTGGTGATCATAGACAGCAGAGAGGAacagAATTGTATCAGTGGATTCAATGGGATGTTCTGGATTGGTCtgtctgacagagagacagaggggtcatGGAAATGGGTGGATGGAACACCACTGACCAtagaGTACTGGAAGAGTGGAGAGCCTAACAGTTACGGCGGTGAAGAGGACTGTGCTGAGAGAAGCTTAATTTATTCTAACACAGAGCAGAGCTGGAATGATGTAGCATGTGGTCAACTGAAGTTAGGGATCTGTGAGAAAGTGGCTTATCCGTAACTCAAACTGCACATATAACTGCATTCAAACTGCATTCTTTTCTTTTCATTTTTCATGAACCATcaagtaatatactgtatatgtttttttttacaactccTGCTTGGACTATTGCATACAATTATTAGATTATCATTTCAATTATAATTTTGATTAATTATATTTCCCCAttgtttaaataaatatatatatatatatcaatgccTAATTAGCTTAGTGCAGCTGCTATTACCCTATAATAACCCCAACATGTTATTTTACTTTGTTTTGTTGTCATTTGAGTCTTTTTATATCTTATACCAAAAGTATGGATGTATGACTCCTCCACTTGTTTCCAGGTTTCCAAATAA
>XM_021597707.2
AACTGAAAAGTACTGATGTTATGGAGAAAATTTATGCTAACATTAGTGCTGAAACCGTAAAGGTTCTTCATGACCCCAACATTGAGACCCAGGATGTCACCTCTAGTGGTATGGCAGGAAGGCAACAATTTGACAACAGAGTGGCAAGTGACTTTGAGGAGGAGCAGACTAAGCTattgacagagacagaccagcTGAAGGGGGAGATAGTTATCCTTCAAAATAAATGATTGTTTATGGAGCATCATTTTAAAATGGGATGGCGTCATTTTGGATCCAGTTTTTACCTCTTCTTCACTGTGGAGAAGACTTGGGAGCAGAGCAAACAGGACTGTGTAGGGAGTGGAGCCGACCTGGTGATCATAGACAGCAGAGAGGAacagAATTGTATCAGTGGATTCAATGGGATGTTCTGGATTGGTCtgtctgacagagagacagaggggtcatGGAAATGGGTGGATGGAACACCACTGACCAtagaGTACTGGAAGAGTGGAGAGCCTAACAGTTACGGCGGTGAAGAGGACTGTGCTGAGAGAAGCTTAATTTATTCTAACACAGAGCAGAGCTGGAATGATGTAGCATGTGGTCAACTGAAGTTAGGGATCTGTGAGAAAGTGGCTTATCCGTAACTCAAACTGCACATATAACTGCATTCAAACTGCATTCTTTTCTTTTCATTTTTCATGAACCATcaagtaatatactgtatatgtttttttttacaactccTGCTTGGACTATTGCATACAATTATTAGATTATCATTTCAATTATAATTTTGATTAATTATATTTCCCCAttgtttaaataaatatatatatatatatcaatgccTAATTAGCTTAGTGCAGCTGCTATTACCCTATAATAACCCCAACATGTTATTTTACTTTGTTTTGTTGTCATTTGAGTCTTTTTATATCTTATACCAAAAGTATGGATGTATGACTCCTCCACTTGTTTCCAGGTTTCCAAATAA

Function

NR:

description
CD209 antigen-like protein A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973693.1 False 989 mRNA 0.38 4 35313953 35315936
XM_036973075.1 False 924 mRNA 0.39 5 35313953 35316025
XM_021597707.2 True 985 mRNA 0.39 5 35313953 35316192

Neighbor

gene id symbol gene type direction distance location
odf3b odf3b coding downstream 26501 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 28136 35281285 ~ 35285817 (-)
LOC118947385 NA coding downstream 445658 34856461 ~ 34868295 (-)
zp2.3 zp2.3 coding downstream 622994 34686750 ~ 34690959 (-)
LOC110521923 LOC106573414 coding downstream 649482 34659087 ~ 34664471 (-)
LOC110532260 NA coding upstream 118603 35433794 ~ 35694776 (-)
LOC110522006 LOC106573384 coding upstream 426458 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 434113 35750305 ~ 35753348 (-)
LOC110522154 LOC105022174 coding upstream 576315 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 623550 35939742 ~ 35961413 (-)
G37329 NA non-coding downstream 898 35312819 ~ 35313055 (-)
G37323 NA non-coding downstream 13522 35300178 ~ 35300431 (-)
G37322 NA non-coding downstream 14334 35299333 ~ 35299619 (-)
G37196 NA non-coding downstream 202658 35110630 ~ 35111295 (-)
G37184 NA non-coding downstream 222578 35091116 ~ 35091375 (-)
G37901 NA non-coding upstream 108048 35424240 ~ 35424504 (-)
G37884 NA non-coding upstream 120128 35436320 ~ 35436773 (-)
G37928 NA non-coding upstream 153147 35469339 ~ 35469648 (-)
G37930 NA non-coding upstream 155136 35471328 ~ 35471681 (-)
G37310 LOC106573403 other downstream 35948 35273709 ~ 35278005 (-)
G36196 NA other downstream 932721 34341562 ~ 34381232 (-)
G36141 NA other downstream 951217 34277700 ~ 34362736 (-)
G35628 NA other downstream 1445908 33867558 ~ 33868045 (-)
G35299 NA other downstream 1861540 33442368 ~ 33452413 (-)
G37907 NA other upstream 124726 35440918 ~ 35441328 (-)
G37976 NA other upstream 267100 35583292 ~ 35583608 (-)
G38045 LOC106573386 other upstream 405248 35721440 ~ 35722056 (-)
LOC110522187 LOC106573361 other upstream 1053902 36370091 ~ 36409064 (-)
G38855 NA other upstream 1192346 36508538 ~ 36510829 (-)

Expression


Co-expression Network