LOC110521975 (LOC106561266)


Basic Information

Item Value
gene id LOC110521975
gene name LOC106561266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35382733 ~ 35435548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599998.2
TAAAGTCGTCTGCGGGGGTTGatccctttaaaaaaaatctctctcCGTCAAGCCTGGCGTGgagttttttttgtattattctcTTCAAGGCACGAATTTGCCAGTGACACCTCACGTGAACCTCCTTCAATTTCGCGCACTAATCCTAAAAGAAGGCATGAAGTGTTAAATGTTAGAAACACACAGAACCGCGtgcagacaaggagagagagggcgaaAAACGAGAGAGCGACGCACGCGCTGTTCTAGTGCGTCTGTGCAAACACTgcgttaaagagagagagagaaaaaagatccAATTTCAAAAAACCAAAAACGTGCGCAGCACAATTAGGCTAGAAAACCCCTTgttttttcaacattttttttttttaaataaaataaataaagaaatcaAGCTGGCTCAGTGCGTGTCACCGCACCCCGCTTTGACAGGTGCTGCTCAACCCGTTTGGAGGACTGCTGTCAGCAGCAGCAAAAGGATGGCATCAGAACTGGCAATGAGCAACTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAAGTGAAAAAGGAGCCGGTGGAGCCGGATCGCAGCATCAGCCAGTGCAGCCGTCTGATCACCGGGGGATCCTTGTCTTCCACCCCGATGAGCACGCCTTGCAGCTCGGTTCCCCCTTCCCCAAGCTTTTCGGCGCCCAGCCCGGGCTCCGGGAGCGAGCAGAAGGCTCACCTGGAGGATTTTTACTGGATGAGCGGCTACCAACAGCAGCTGAATCCCGAAGCGCTGGGCTTCAGCCCCGAAGACGCGGTAGAGGCGCTGATCAGCAGCAGTCACCAGCTCCAGTCCTTCGATGGCTATGCTAGAGGGCAGCAGTTTGCCGGGTCGGCCGGGGCAGGAGGCGGCATGGCCGGGGAGGAGATGGGCTCAGCAGCCGCTGTGGTATCGGCTGTTATCGCTGCAGCAGCAGCGCAGAACGGAggtccccaccaccaccaccatcatcaccaccacgcCGGGGGACACCACCCCTCTACCGGGGTCCCGTCCAACGCTAGCTCGGCGGGCAGCCACCAACACATGGGACACCTGGACCTGGACGACAGGTTTTCGGACGACCAGCTGGTGACCATGTCAGTACGGGAGCTGAACCGACACCTCCGCGGGGTCAGCAAAGAGGAGGTGATCCGGCTGAAACAGAAGAGGAGAACCCTAAAGAACAGAGGCTATGCCCAGTCATGCCGCTACAAGCGGGTCCAGCAGAGACATGTTCTGGAGGGTGAGAAGACGCAGCTGGTCCAGCAGGTGGACCACCTCAAGGCGGAGATGTCGCGGCTGGCCAGGGAGAGGGACGCATACAAGGACAAGTACGAGAAGCTCATCACCAACGGCTTCAGAGAAAACGGATCCAGCAGTGACAACACCCCCTCATCCCCAGAGTTCTTCATGACGTCCAGAAAGTTCCTCCATCTGTGATAGTGACCCCTGAACCCTGCCCCCTGACCCTTGACCTGGAGTCTGAGAAACCATGACAGAGGAATGGTGATGTCTTACCAACGTCGTTCCATGGCACCGGACTGTGACAAAGCACAACGTCCACACAACGTCTCCAAACCACCCATAAACCAACCAACAGTCCCTGTACAGAAGTCCAGACAGACCCAGTCGCCCAACACTTTGTCTTTCATGACGAGATTATTGACAGAAACAAATGACAACAAAACCTAACACCCAAGAAAAAGACTTCATGTTTGATTCAACTACTAAAACTCCTGGATTCCCTCTTCCTCTGGCATCACCAGTAGCTACGGACGCAATTCTGACTCAACATGACAAAGATACAGTACCTCCTCATTGTAAATAGCATTTTGTAGAGTATTCTATGTAATAATATGTAGGTTGGAGGTCTTTAACTGTAGACGGATACTGTAGAGGGGAGAAGCGATGACAGTGAGTCCCATTTAGCCCATGATGTGAATgtaaataatatacagtagggCCTCGTATGAAACAAAACTACTGCATCTGTATATAGCCACGAAACCATACCTCTATGTATATAGGCATTACATTATACCTCCTTATTTCTCCTACCCCCCTTCAATCCCCTTAAACTAGCACAATGATACTCACCACTCCCTATATCTCTGTAGACAGACATAGAATAGATATATACAGGAGGAGACTAGAGACACAGAGGGAAGATATACAGTGTGTGATGCAGGTGGCAACACACTGGGGTGAAAAACACAGGCCCACTTTGGCTGGAACTGGTGAACTCTCCCTGCCACAAAGACGGTCAGAGGGGATGTGTTGCCATGTCGAgaggtctctcttctcctctccctttagTGTTAAACTACCACAGTTCAACCTGTAGCCACAGTGTAGCTATTAGATAAGATGAATTTGTACATGTATTTTACTGCTTAGTGAAGTGACGGGTCCAGTTGAAAGGTTTGGCAGCTTTCTACAGTCCACTCAATGTACAAACTTGATTGGTTTTCAtctccactccctccccctccattccTGATTGGCTAGTCCTCCTCGCTCCTCTAGTCCTGATGAGGCTGTTGATAGTCAGTGGGAATGTCCATCAGACGGCCTGTTGGCCCGAAGGCCTCTCTGAGACCAGGCGCTCGCTTAGCTCCCACAGGCTGGCTGCAGTGGCCTGGTCTTCGGGCTgggggagggtaggcagaagaaACAGTTGTTGAAGTACATGCCTCCAAAACCCTCCAGCTCCGGAGCTACTGCACAGTACACTGTGGTGGCTGACCCCTGTTGCTGTGAactcacagacagagagaaagagtgagagagagatacacacacaacaTGGAGGACCCTGATCAACATTATCTTTGTGGGAGGAGAGGACCAtcagagagatacacagaaaCCCTCCCGTCTGCCAAGAGACAAATGAGATCCTGCCACTCTAAAGATGCTGCCAAGACCTCCACcagaataaacacacatctggactcagcgacccccccccccccacccccccacccacccaccatctTTCCTGCATGACCCCAGAGCATCTGTACGAGACAGAGGAGGAACTCCATacaaatggagagagacagatagagatatcGAGAGGATAAACCCCAGAGACACCCCTCTCTGCCACAGCCCATAATGATGGGACAGTGTTACCATGGGGACCATGgccctgtatatatatttatatacatatatttatttCTATATTGTGTGTGAACAGGACTGCTAACTATCCAGAGTGCATGCTGATATATATGTGGTAAATACAATGCTAACTGTCCACAAAACAGCACAGATCtccgcaaaaaaaaaaa
>TU42245
TGACAAAGATACAGTACCTCCTCATTGTAAATAGCATTTTGTAGAGTATTCTATGTAATAATATGTAGGTTGGAGGTCTTTAACTGTAGACGGATACTGTAGAGGGGAGAAGCGATGACAGTGAGTCCCATTTAGCCCATGATGTGAATgtaaataatatacagtagggCCTCGTATGAAACAAAACTACTGCATCTGTATATAGCCACGAAACCATACCTCTATGTATATAGGCATTACATTATACCTCCTTATTTCTCCTACCCCCCTTCAATCCCCTTAAACTAGCACAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599998.2 False 3346 mRNA 0.51 3 35382733 35435548
TU42245 True 294 lncRNA 0.38 1 35434044 35434337

Neighbor

gene id symbol gene type direction distance location
LOC118966681 NA coding upstream 17059 35362815 ~ 35365674 (+)
LOC110521950 LOC106573403 coding upstream 105679 35198681 ~ 35281121 (+)
LOC118964549 shank3 coding upstream 204288 35106960 ~ 35178445 (+)
LOC110521947 LOC106573413 coding upstream 574483 34763838 ~ 34808250 (+)
LOC110521911 LOC106573416 coding upstream 735728 34632990 ~ 34647005 (+)
LOC110521983 LOC106573386 coding downstream 274276 35709824 ~ 35731063 (+)
LOC110522032 LOC106573385 coding downstream 317791 35753339 ~ 35767069 (+)
LOC110522073 LOC106573381 coding downstream 379913 35815461 ~ 35891607 (+)
LOC110522113 LOC106573380 coding downstream 487434 35922982 ~ 35938680 (+)
LOC110522059 LOC106573371 coding downstream 651588 36087136 ~ 36116437 (+)
G37015 NA non-coding upstream 99886 35281316 ~ 35282847 (+)
G36903 NA non-coding upstream 218056 35118775 ~ 35164677 (+)
G36882 NA non-coding upstream 292906 35089545 ~ 35089827 (+)
G36881 NA non-coding upstream 294001 35088504 ~ 35088732 (+)
G37370 NA non-coding downstream 1362 35436910 ~ 35440011 (+)
G37404 NA non-coding downstream 36363 35471911 ~ 35472187 (+)
G37422 NA non-coding downstream 85907 35521455 ~ 35521671 (+)
G37432 NA non-coding downstream 113360 35548908 ~ 35549119 (+)
G37434 NA non-coding downstream 116130 35551678 ~ 35551895 (+)
LOC110521835 LOC106573423 other upstream 890974 34490120 ~ 34507419 (+)
G35700 NA other upstream 1422286 33960060 ~ 33960447 (+)
G35699 NA other upstream 1424052 33958097 ~ 33958681 (+)
G37450 NA other downstream 155842 35591390 ~ 35591927 (+)
rad52 rad52 other downstream 697984 36133477 ~ 36140940 (+)
G37719 LOC106573365 other downstream 705525 36141073 ~ 36143962 (+)
G37390 NA non-coding upstream 4587 35429229 ~ 35429457 (+)

Expression


Co-expression Network