LOC110532260


Basic Information

Item Value
gene id LOC110532260
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35433794 ~ 35694776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532260
ATGGCTGTGAGCAGCCTATCTCTGCCCCACTGCCTGCCTGAGACTGTTCATGAGGCCTTGTTTCGTCACAttaacaagaggaatacctacttTGACCCACGGCAGGAATTCACAATGGAGGATGTGCCGGTGAATCCGAAGCGTTACGACAGTAACACAGCAGCCCTGGAGATCCTGCAGGGTTGCAACCTCTCAGACAGGGTGGTCCTCATCACCGGGAGCAACTCTGGGATCGgtTTTGATACAGCCAAGTCATTTGCCCTCCATGGGGCCCATGTGATCCTGGCCTGTAGAAACGTCTCCAAGGCTAGCTAGAATGTAAATAggctGGCTGAGGACTGGCACAAGGCCAGGGTGGAGGCCATGAGGTTGGACCTGGCCTCTCTCCGCCGTGTCAGAACCCCCTCCTTATACTCCATCCCCAGCAACTCCTCCAACCCACCAAGCCGGGGTCTCCTGCCATTCCACATCCTGATATGTAATGCAGCAGTGTGTACCCAGCCCTGGCATCGGACGGAAGATGGCCTGGCAGATCTGCCATCAAGGTCATGTCCTGTTGGTGCAGTGTCTACAGGAAGTGTTGCGATGCTCTGACCCAGCCCGTGTGGTGGTGTCCTCTGAGTCACACAGGTTTACAGACCTGCTGGACCAGTCTGGTAAGGTGGACCTGGCTGTGTTGTCTCCTCCTCCCAGACTACTAGTCCATGCTGGCCAACAACCGGGCCAAGCTGTGCAACCTCCTGTTCTCCAATGAGCTCCACCGACGCCTCGCGCCCCACTGTGTCACTGCCAACGCAGTGCACCCTGGGAACTTGATGTACACGGCCATCCATCGTACATCGTTCTTCACCCTGGCTTGCCCATTCACCAAGTCTATGCAACAGGGGTCAGCCACCACAGTGTACTGTGCAGTAGCTCCGGAGCTGGAGGGTTTTGGAGGCATGTACTTCAACAACTGTttcttctgcctaccctcccccAGCCCGAAGACCAGGCCACTGCAGCCAGCCTGTGGGAGCTAAGCGAGCGCCTGGTCTCAGAGAGGCCTTCGGGCCAACAGGCCGTCTGATGGACATTCCCACTGACT
>TU42857
ACAAAGATAATGTTGATCAGGGTCCTCCAtgttgtgtgtgtatctctctctcactctttctctctgtctgtgagtTCACAGCAACAGGGGTCAGCCACCACAGTGTACTGTGCAGTAGCTCCGGAGCTGGAGGGTTTTGGAGGCATGTACTTCAACAACTGTttcttctgcctaccctcccccAGCCCGAAGACCAGGCCACTGCAGCCAGCCTGTGGGAGCTAAGCGAGCGCCTGGTCTCAGAGAGGCCTTCGGGCCAACAGGCCGTCTGATGGACATTCCCACTGACTATCAACAGCCTCATCAGGACTAGAGGAGCGAGGAGGACTAGCCAATCAggaatggagggggagggagtggagaTGAAAACCAATCAAGTTTGTACATTGAGTGGACTGTAGAAAGCTGCCAAACCTTTCAACTGGACCCGTCACTTCACTAAGCAGTAAAATACATGTACAAATTCATCTTATCTAATAGCTACACTGTGGCTACAGGTTGAACTGTGGTAGTTTAACActaaagggagaggagaagagagacctcTCGACATGGCAACACATCCCCTCTGACCGTCTTTGTGGCAGGGAGAGTTCACCAGTTCCAGCCAAAGTGGGCCTGTGTTTTTCACCCCAGTGTGTTGCCACCTGCATCACACACTGTATATCTTCCCTCTGTGTCTCTAGTCTCCTCCTGTATATATCTATTCTATGTCTGTCTACAGAGATATAGGGAGTGGTGAGTATCATTGTGCTAGTTTAAGGGGATTGAAGGGGGGTAGGAGAAATAAGGAGGTATAATGTAATGCCTATATACATAGAGGTATGGTTTCGTGGCTATATACAGATGCAGTAGTTTTGTTTCATACGAGGccctactgtatattatttacATTCACATCATGGGCTAAATGGGACTCACTGTCATCGCTTCTCCCCTCTACAGTATCCGTCTACAGTTAAAGACCTCCAACCTACATATTATTACATAGAATACTCTACAAAATGCTATTTACAATGAGGAGGTACTGTATCTTTGTCATGTTGAGTCAGAATTGCGTCCGTAGCTACTGGTGATGCCAGAGGAAGAGGGAATCCAGGAGTTTTAGTAGTTGAATCAAACATGAAGTCTTTTTCTTGGGTGTTAGGTTTTGTTGTCATTTGTTTCTGTCAATAATCTCGTCATGAAAGACAAAGTGTTGGGCGACTGGGTCTGTCTGGACTTCTGTACAGGGACTGTTGGTTGGTTTATGGGTGGTTTGGAGACGTTGTGTGGACGTTGTGCTTTGTCA

Function

NR:

description
WW domain-containing oxidoreductase

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532260 False 1087 mRNA 0.57 10 35434795 35694776
TU42857 True 1291 lncRNA 0.46 1 35433794 35435084

Neighbor

gene id symbol gene type direction distance location
LOC110520384 LOC106573404 coding downstream 118603 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 147343 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 148978 35281285 ~ 35285817 (-)
LOC118947385 NA coding downstream 566500 34856461 ~ 34868295 (-)
zp2.3 zp2.3 coding downstream 743836 34686750 ~ 34690959 (-)
LOC110522006 LOC106573384 coding upstream 47874 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 55529 35750305 ~ 35753348 (-)
LOC110522154 LOC105022174 coding upstream 197731 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 244966 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 276555 35971331 ~ 35982887 (-)
G37901 NA non-coding downstream 10291 35424240 ~ 35424504 (-)
G37329 NA non-coding downstream 121740 35312819 ~ 35313055 (-)
G37323 NA non-coding downstream 134364 35300178 ~ 35300431 (-)
G37322 NA non-coding downstream 135176 35299333 ~ 35299619 (-)
G37196 NA non-coding downstream 323500 35110630 ~ 35111295 (-)
G38044 NA non-coding upstream 25459 35720235 ~ 35720521 (-)
G38046 LOC106573386 non-coding upstream 29042 35723818 ~ 35724185 (-)
G38047 LOC106573386 non-coding upstream 29532 35724308 ~ 35726101 (-)
G38049 NA non-coding upstream 37566 35732342 ~ 35732680 (-)
G38050 NA non-coding upstream 40000 35734776 ~ 35734989 (-)
G37310 LOC106573403 other downstream 156790 35273709 ~ 35278005 (-)
G36196 NA other downstream 1053563 34341562 ~ 34381232 (-)
G36141 NA other downstream 1072059 34277700 ~ 34362736 (-)
G35628 NA other downstream 1566750 33867558 ~ 33868045 (-)
G35299 NA other downstream 1982382 33442368 ~ 33452413 (-)
G38045 LOC106573386 other upstream 26664 35721440 ~ 35722056 (-)
LOC110522187 LOC106573361 other upstream 675318 36370091 ~ 36409064 (-)
G38855 NA other upstream 813762 36508538 ~ 36510829 (-)
G40079 NA other upstream 2021764 37716540 ~ 37717033 (-)
G40732 NA other upstream 2430504 38125280 ~ 38125725 (-)
G37884 NA non-coding upstream 1236 35436320 ~ 35436773 (-)
G37928 NA non-coding upstream 34255 35469339 ~ 35469648 (-)
G37930 NA non-coding upstream 36244 35471328 ~ 35471681 (-)
G37934 NA non-coding upstream 46342 35481426 ~ 35481626 (-)
G37941 NA non-coding upstream 61179 35496263 ~ 35496550 (-)
G37907 NA other upstream 5834 35440918 ~ 35441328 (-)
G37976 NA other upstream 148208 35583292 ~ 35583608 (-)

Expression


Co-expression Network