LOC110521997 (LOC100196677)


Basic Information

Item Value
gene id LOC110521997
gene name LOC100196677
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35750305 ~ 35753348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600041.2
GTAGCTAGGCATTCGACAGGAAGTAGCTACCTAGCTAGACAGCTAGCATCACAGAATTTGGTTGCATCCTCAGACACTTCACATAAAAATGCCGGACTTAGCGGTAGAAAATGTGGTTGTCCATCCACTGGTGTTGCTCAGCGTGGTGGATCATTTTAATAGAATAGGGAAAGTAGGCAACCAGAAGCGAGTAGTGGGTGTTCTCCTCGGCTCTTGGCATAAGAAAGTCCTTGATGTGTCCAACAGCTTTGCAGTGCCATTTGATGAGGATGACAAGGATGATTCAGTGTGGTTCCTGGATCATGATTACTTGGAGAATATGTACAGCATGTTCAAGAAAGTCAATGCCAGAGAGAGGATAGTGGGTTGGTATCACACAGGTCCTAAACTACATAAGAATGACATTGCCATCAATGAACTCATCAAGCAATACTGCACCAATTCCGTATTAGTGATAATTGATGTAAAGCCTAAGGACCTGGGCCTGCCAACAGAAGCCTACTTTTCTGTGGAGGAAATACATGATGACGGCACTCCGACCTCCAAGACGTTTGAACATGTGACCAGTGAGATCGGAgcagaggaagcagaggaggtGGGCGTGGAGCACTTGCTCAGAGACATCAAGGACACAACAGTGGGTACTCTGTCTCAGCGGATCACCAACCAGGTACATGGCCTGAAGGGACTCAACTCCAAGCTGCTGGACATCAGGTCTTACCTGGAGAGAGTGGCTGCAGACAAGCTTCCCATCAACCACCAAATCGTTTACCATTTACAGGACGTCTTCAACCTGCTTCCCGATGTCAACCTACTGGAGTTCACTAAGGCCTTCTACCTAAAGACCAATGACCAGATGCTGGTGGTTTACCTGGCTTCCCTTATCCGCTCAGTGGTGGCTCTCCACAACCTCATCAACAACAAGATCTCCAACCGTGATGCAGAGCGGAAGGAGggacaggagaaagaagagggcaagaaggagaagaaagaggacaaggagaagaaggacgagaaagagaaggagaagggtgaCTCCTCATCCAAGAAagatgagaagaagaaaaaataagtGCACACTATTTTGGTGTGTCTTATAAACCACCCTATTCCCCTggatagtgcaccacttttggcCTGAGCTACATATCTGTGTATAAGGTCTAGCTAAAAGTAGTGCTCTGTATGGTGTCATTTGAGACTTTGTCATAACTGGCATAATAACTATAGTGCTGAGGGTGAGAGGATGGTTATGTGTATTGGATGTTCTCTACAATGAGAATGATTGTTCTGCACTGTCTGGGCTGCGTTCAGTAGGGCACAACGTTAAGGAACGCTCAGATAGAAATGCATATTGTAGAACTGACATGCCTCTCTGATGTGAGCAATCACATCCTCTCTATTCTGTTATTTCTATCGGTAATGTTCAGTAAATTCCCCCCTCCTGAATACGACCCTGGTGGTGTGTCTCGTATGTACatacatacagagacacacaatTGCCTGGGAGCTCTTATCTTTCGTATGGTGAAAAGGAACATTACATTTCTGTATCACTCATTAAAGTGGGGTCCTATTAAATAATTTTATGTTTCCAAttggcaaa

Function

NR:

description
26S proteasome non-ATPase regulatory subunit 7-like

GO: NA

KEGG:

id description
K03038 PSMD7, RPN8; 26S proteasome regulatory subunit N8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600041.2 True 1606 mRNA 0.45 8 35750305 35753348

Neighbor

gene id symbol gene type direction distance location
LOC110522006 LOC106573384 coding downstream 706 35742650 ~ 35749599 (-)
LOC110532260 NA coding downstream 55529 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 434113 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 462853 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 464488 35281285 ~ 35285817 (-)
LOC110522154 LOC105022174 coding upstream 139159 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 186394 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 217983 35971331 ~ 35982887 (-)
LOC110522092 lrrc17 coding upstream 252154 36005053 ~ 36045196 (-)
fam185a fam185a coding upstream 284189 36037537 ~ 36047583 (-)
G38059 NA non-coding downstream 7802 35742286 ~ 35742503 (-)
G38050 NA non-coding downstream 15316 35734776 ~ 35734989 (-)
G38049 NA non-coding downstream 17625 35732342 ~ 35732680 (-)
G38047 LOC106573386 non-coding downstream 24204 35724308 ~ 35726101 (-)
G38046 LOC106573386 non-coding downstream 26120 35723818 ~ 35724185 (-)
G38126 NA non-coding upstream 109477 35862825 ~ 35863462 (-)
G38139 LOC106573381 non-coding upstream 135239 35888587 ~ 35891659 (-)
G38147 NA non-coding upstream 189012 35942360 ~ 35942604 (-)
G38119 NA non-coding upstream 189338 35942686 ~ 35943267 (-)
G38045 LOC106573386 other downstream 28249 35721440 ~ 35722056 (-)
G37976 NA other downstream 166697 35583292 ~ 35583608 (-)
G37907 NA other downstream 308977 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 472300 35273709 ~ 35278005 (-)
G36196 NA other downstream 1369073 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 616746 36370091 ~ 36409064 (-)
G38855 NA other upstream 755190 36508538 ~ 36510829 (-)
G40079 NA other upstream 1963192 37716540 ~ 37717033 (-)
G40732 NA other upstream 2371932 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2434140 38187488 ~ 38191736 (-)

Expression


Co-expression Network