LOC110522113 (LOC106573380)


Basic Information

Item Value
gene id LOC110522113
gene name LOC106573380
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35922982 ~ 35938680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976731.1
atgtgtcactgtctgtcaatgTGTCAGCTCAAAATTTGCTCTCGACCTGAGTTCACCTACGCTGTAGACTTTCATTgataggctaggttgtagtaaCCTCAATATGGGTACAGGGAACAttttagtatcatgtagtagcctaaaacTATCAATGTTACATGAACTGGGTTAATGGAATataaatgacagtcatccaatatgctgtaacagAAATAGGCCATGCTCCCTCGTAATAACGGCACCGACCGCGACTGGTCGGACACCAGTAAGACTAGCTGCCGCCTGTTAACCCTGACTACATTTACCACCCATCTGCTTGGAAGTTTGTTTGCAAACAGTTTAAAACCCATTTCCCAACGTTGTAGAATACTGTAACTCTTGAATGCCTTCTCGATTATCTGATTGGCTGGAGCATTTCATCTGGCGTGGACGACGTTTCAAGTTGACGTGGATGCATGTCTAGCGAACTggtgtttagtttttttttgtccTTATCACGGTTTGTTGCGACATCATTTCAATCGATGAAAGTTTTTTATTTACTGTTAGTTACCTTTTCAAAATGTCCTTTGTTGAAGATGGTGAATGTAGTCGCGGCTTGTATCAACTCAACAAATTCGAGAAACTGTCGGGGAGGCCTCCCATCAGAGACTCAGGCTCTAAGAAGAGAGTAAGATGGCTTCAGGCTCGGCGGATCTTCTCCCCTTCGTGCCCCAACTTCCGCATCCCTAATAGGTTTCTGAGAGAAGGTCACTGTGCCCCCCCGGCCCGCAGCGGGCACCGTTGTGTGGCAGACAATGCCAACCTGTATGTGTTTGGAGGATACAATCCTGACTTTGAGGAGGCAGGTGGCTCGGAGAACGAGGACTACCCTCTTTTCAGGGAGCTGTGGAGGTTTCACTTCGCCACGGCTACCTGGCAACTGGTCCACACAGAGGGCTACATGCCCACCGAGCTGGCTTCCATGTCAGCTGTCTTACACGGCAACAATCTATTGGTGTTTGGGGGCACTGGGATTCCTTTTGGAGAAAGCAACGGGAATGACGTCCATGTCTGCAATGTTCACTACAAACGCTGGAAACTGCTCAACTGCCGAGGGAAGAAACCCAACCGAATCTACGGGCAGgcCATGGCCATCATTAATGGCTATCTGTATGTGTTTGGAGGGACGACAGGCTACGTCTACAGCACAGACCTACACAGGCTGGACCTGACTACCAGGGAGTGGACCCACCTCAAGCCCAACAACCCCCCTACAGACCTGCCAGAGGAAAGGTACAGACATGAGGTGGCCCATGATGGACAGAGAATATACATCCTAGGAGGCGGGACTTCCTGGACATCATATCCCCTAGACAAAATACATGCCTACAACCTAGAGACTAACTCCTGGGAGGAGATTATCACGAAACCTCATGAAAAAATAGGGTATCCTGCAGCACGACGGTGTCACAGTTGTGTCCAGGTCAGGCAGGagGTGTTTCTATGTGGGGGTTACAACGGGGAGCTGATCCTAGCTGACCTGTGGAAGATCAACCTGCAGACCTTCCAGTGGACCAAGCTACCCACCGTCATGCCTGAGCCTGCTTACTTCCACTGTGCTGCAGTCACACCGgctggctGTATGTATGTGCATGGTGGAGTGGTGAACATGTCAGAGAACAGGAGGACTGGGTCTCTGTACAAGGTGTGGCTAGTGGTGCCCAGCCTGCTGGAGCTGACCTGGGAGAGGCTGCTCAAGGCCTTCCCTCGCCTGGCTCAGCTCTCCTCCCTGCAGCTTCTCAGCCTGGgcctcacacacaccctcatccAGCGCCTCAAGTAGACCACCATGCCCTCACGGCTGACGTGGGAACAGGACAAAGCAAGGACAGCGGTGAAGGCCAACGGATTGTGGATGGAACTGAGTTGACTCCCTTTCCTGCCACCACTGAGCAGAGGGACTGAATGGCCAATGGAACAATGAACAGTTGTGTTGGCATATCTGGGAATGGACTGAGGGATGAGAAGCGATGTATATTGTGGACATAACGTCAGGTCATCCTCAAACATTGGATGCCTTTTAAAAAATGTACGTTTTTAATGTGTGCACTTTGACTGAGTTTGAAATCCCAAGTGGAATGTTTTAAAATTTGTGTTGGAGTCCCTGGGACCTGGTCTATTTCAGGGTTTGTTTGCCTTCATATTTCATTAGCCATGGCTTAACTAGGAGAGTGGAGTTTTAGTAGAACTTGGGAGTTCACTGAATGCTACTTCTTTCACCCTTTTATGTGTTTGCATGCAGCTGACCACACTAATCATACCCGTTATCGTGAGAATCGTTTCAAAGGGCTCTACAGTCTCTAGGCAAAAGCTCTGCAACGTAGCCGATGGAGGTTAGTTTGCGTAGCTCTCTACGTAGTATTACGTATTTTCTTTTTTTGTGCTGCTGAATTTTTAGAACGTGACGCAAACGTAGCTCCGTAGACTGAAAACCACTATGGAGAGCCCTTAACTCTACTCATTATTCCTCCCACCTCCCACCACACACATGCTGTTCAAAAGGGAATAGCGGAAACTTTTAAACTCAGTGGTGGTTTATTTCCTTAATGCCTAAAGGGACATTTTTAATTTGTCTCTTTTGATACTGTGATGAATAGGTTCCTGAGGGAGACAGACCAGGTACATGATGCTGATAGACATGGTGTCTTGTTGTTTTCTGTAAGGAAGCCCACTGGTAAAGAAACAGCTGCTGCTATGTCCACTGACCGGTCTAATACGAATTGGTCTCATCTAGCAGGCTGGTGGGGCAAGGCATTGATTTAGGACAGACAGGGCAAATCTGGTTTGGTATACTTGAGCCAGTGTGACTATGTGAACCCCCTGTGACAGCACTGTGATTCTCTAGAGCCTGAGTCTTACAACTTCCATTCTTAGACACACTGATCACACAGCGGGAGCGGTGTGAAACTGTACTGTAGCTCCAAAGTGAAAAGAGCTTGCCATTTATTTCATTTAGTGCCTTTTCAGATCATTTTTTTCCAGTGTGACAACTGTATTGGTTGTGTAGAGTTCTCTCTTTTTACCACGCATGTGTCCCTGAAGCATGGCTTTTAACTTTACTCCTAGTCACTGACAATATGGAAATGTCCATATAGCCCTCCACCAGTCTCTGTTCCCCCATGCTTTACTAATATGAGCCATTGACTCGCTCATCTTTTAATGTTGTCCTCCTTCCACCTATTCTGTTTACTGACCTTTGGTCAAACCATTCTGTCCATTACAGTTCTTTTTATCTGGGTTTCTGAATGTCGATCACGCATAGTGAACCCTTAACTTGTGAATTTGTTTGGACAGACTATGTATAGAGTCATTTGGTATGGTGCAGCCCAATATGGTGACCGGAGTGTGGGTGTGTCGAAAGGAGTGGGTGTATGGAAAGTGAATCAGCTAATTGGGCAGATTTGTTGCCACTCGACTGTTTTGCCTGTCAGTTTAAGCCAGTGCGAATGACTAGTGCACCCGGTCTTGTATTGCTCCAGCACTACACGGCGGACTCAAATAACCAAATCATCATTTGTTGATTTATTTGAATCAGCTCTGTAGCGCTGGGGCAAAAACCACAACGTGCACCTCTTGGGGTCCCCAGGAAACTCTGGTGTAACCTAATAGCAGAGTACTACAAtcctttccacgcgcccactcACCCATACTCCGGGCGTCATATTGGGCTGCAGCTACCCCCTTCTGCATTTATCCTATTTTTGCTTTTAAAGATGTGCACCATGTCTTCAGGTCATTTTAACATTAAACCAAACTGGAAATGTATCTGGTGGAAAAACCAATGAAATCACGACTCTGCCTTTTTAACTTTTCAACAATGTTTAATCTCTAATATCCCCCACATTTTCCCTGTCAGACAGACTGATAGCATGTAACTCACATGTCACCTCCGGTCCTCCTTTTTTTATACTATAGTTTCTGCACAGAACACAGGTGCTCAGTCTGAAATCAATGCCAATCCTCTTGCCCCCTGGCTACTACTTGTAGATCTGGAAGACTAGCGTTGGCTTCTGACATGTTTCTTACACCCACTCACATCTTTTAGGATCATGAGAAGTATCAAGGGATAGTGCCTAAGGGTTGAGTTTGGACTGGGAAATTTGCCTTTGCTATAACTCTAATTTTTGGGAAACTGTGGGCTTCTGTATGAGACACTGCACCCAGTGGTCTGTTTTGTTGGTGATCTATGGAATAGATTTTGGAACTCCATGTCAACCTGTGAATGTAGTCACTTTACACACGCTGTACTGAATGTGGATGGACAAACAACCCGACTCTGCACAATTAAAGGCAATCATGATGATGCTGTCATGACTCCATTTAGGTTTTTTAATTGAATTGTTTGAATCAATAAATGTACTGTAAGCACTTTTTAAAAAA
>TU42471
TCCAGGGATATGAGTCCAGGGATATGAGTccagggatatgaatactttctaaaggcatgatatagtatatattttttatgtccATATTGTGCATTTAGTTTCTAGGGGATAGCCATTTGGTTCACAAGAAAATAGGCTAATGAAAAGCATCAAATCAATAATGGAATTTAAAATTAACTCAGCAACTCTGGACTTCAGAACTTCCACCAGTTTGGCACCAAAACATATACATTAAAGATGTATTAAGAAAATGATATTTCATGCTAAAACCATGTTAAAcacaatggtattcactaaattgatgttttatatttaagatcatgttttacagctttgtccaaacattcggattcagaggtcgagacagcatgTGTGGTAGTCAAACAGCAGGTCCGAGACCAGTAGCACGTCCggtaaacaggtcagggttccatagccacaggcagaacagtttgaaactggagcagcagcacgaccaggtggactggggacagccaggagtcatcaggccaggtagtcctgaggcatgatcttACGGCTCACATcctctgagagggagggagagagaattagtgggagcatacttaaattctcACACGACACTAGATAAGAcgggagaattacaccagatataacagactgactctAGTTCCCCAgcacacaaactattgcagcctagatactggaggctgagacgggtgggtcgggggacactgtggccccgtccgacgatacccacggacagggccaaccaggcaggatataaccccacccactttgccaaagcattgccctcacaccactagagggatatctacaGACCACCAAcgtactaccctgagacaaggctgagaatAGCCAACGAAGGTCTCCCCCACCACACGAGCCAGAGGGGGTGCCAAaccaatgcttcccatagctgtcaagttggctggatgtcgtttgggtggtggaccattcttgatacacactggaaactgttgtgtgaaaaaccgagtagcattgcagttcttgacacaaaccgctgcgcctagcacctactaccataccccctgttcaaaggcacttaaatcttttgtcttgcccgttcaccctctgaatggtgcgcgcgcacacacacaatccatgcctcaaggcttaaaaacacttcttgaacctgtctcctcttcatctacactgattgaagtggatttaacaggtgacctcaataagggatcatatctttcacctggtcagtgtgtcATGATAGAGCAGAtgtcttaatgttttgttcactcagtgtattttacatgtgataaggccacacacaGGGCCAGAATTAATTGCATAaatgtgataatctgaagtacccattaccaaaattctggtagtttactggtaaactttgaAAGTTACCAATAACATACCGTCCCTTTGCTTCCCTAGTCTAGGCTATGGACTGGAAGTCCgtgttcatccctctctcttccccctcagagGTGTTTCTATGTGGGGGTTACAACGGGGAGCTGATCCTAGCTGACCTGTGGAAGATCAACCTGCAGACCTTCCAGTGGACCAAGCTACCCACCGTCATGCCTGAGCCTGCTTACTTCCACTGTGCTGCAGTCACACCGgctggctGTATGTATGTGCATGGTGGAGTGGTGAACATGTCAGAGAACAGGAGGACTGGGTCTCTGTACAAGGTGTGGCTAGTGGTGCCCAGCCTGCTGGAGCTGACCTGGGAGAGGCTGCTCAAGGCCTTCCCTCGCCTGGCTCAGCTCTCCTCCCTGCAGCTTCTCAGCCTGGgcctcacacacaccctcatccAGCGCCTCAAGTAGACCACCATGCCCTCACGGCTGACGTGGGAACAGGACAAAGCAAGGACAGCGGTGAAGGCCAACGGATTGTGGATGGAACTGAGTTGACTCCCTTTCCTGCCACCACTGAGCAGAGGGACTGAATGGCCAATGGAACAATGAACAGTTGTGTTGGCATATCTGGGAATGGACTGAGGGATGAGAAGCGATGTATATTGTGGACATAACGTCAGGTCATCCTCAAACATTGGATGCCTTTTAAAAAATGTACGTTTTTAATGTGTGCACTTTGACTGAGTTTGAAATCCCAAGTGGAATGTTTTAAAATTTGTGTTGGAGTCCCTGGGACCTGGTCTATTTCAGGGTTTGTTTGCCTTCATATTTCATTAGCCATGGCTTAACTAGGAGAGTGGAGTTTTAGTAGAACTTGGGAGTTCACTGAATGCTACTTCTTTCACCCTTTTATGTGTTTGCATGCAGCTGACCACACTAATCATACCCGTTATCGTGAGAATCGTTTCAAAGGGCTCTACAGTCTCTAGGCAAAAGCTCTGCAACGTAGCCGATGGAGGTTAGTTTGCGTAGCTCTCTACGTAGTATTACGTATTTTCTTTTTTTGTGCTGCTGAATTTTTAGAACGTGACGCAAACGTAGCTCCGTAGACTGAAAACCACTATGGAGAGCCCTTAACTCTACTCATTATTCCTCCCACCTCCCACCACACACATGCTGTTCAAAAGGGAATAGCGGAAACTTTTAAACTCAGTGGTGGTTTATTTCCTTAATGCCTAAAGGGACATTTTTAATTTGTCTCTTTTGATACTGTGATGAATAGGTTCCTGAGGGAGACAGACCAGGTACATGATGCTGATAGACATGGTGTCTTGTTGTTTTCTGTAAGGAAGCCCACTGGTAAAGAAACAGCTGCTGCTATGTCCACTGACCGGTCTAATACGAATTGGTCTCATCTAGCAGGCTGGTGGGGCAAGGCATTGATTTAGGACAGACAGGGCAAATCTGGTTTGGTATACTTGAGCCAGTGTGACTATGTGAACCCCCTGTGACAGCACTGTGATTCTCTAGAGCCTGAGTCTTACAACTTCCATTCTTAGACACACTGATCACACAGCGGGAGCGGTGTGAAACTGTACTGTAGCTCCAAAGTGAAAAGAGCTTGCCATTTATTTCATTTAGTGCCTTTTCAGATCATTTTTTTCCAGTGTGACAACTGTATTGGTTGTGTAGAGTTCTCTCTTTTTACCACGCATGTGTCCCTGAAGCATGGCTTTTAACTTTACTCCTAGTCACTGACAATATGGAAATGTCCATATAGCCCTCCACCAGTCTCTGTTCCCCCATGCTTTACTAATATGAGCCATTGACTCGCTCATCTTTTAATGTTGTCCTCCTTCCACCTATTCTGTTTACTGACCTTTGGTCAAACCATTCTGTCCATTACAGTTCTTTTTATCTGGGTTTCTGAATGTCGATCACGCATAGTGAACCCTTAACTTGTGAATTTGTTTGGACAGACTATGTATAGAGTCATTTGGTATGGTGCAGCCCAATATGGTGACCGGAGTGTGGGTGTGTCGAAAGGAGTGGGTGTATGGAAAGTGAATCAGCTAATTGGGCAGATTTGTTGCCACTCGACTGTTTTGCCTGTCAGTTTAAGCCAGTGCGAATGACTAGTGCACCCGGTCTTGTATTGCTCCAGCACTACACGGCGGACTCAAATAACCAAATCATCATTTGTTGATTTATTTGAATCAGCTCTGTAGCGCTGGGGCAAAAACCACAACGTGCACCTCTTGGGGTCCCCAGGAAACTCTGGTGTAACCTAATAGCAGAGTACTACAAtcctttccacgcgcccactcACCCATACTCCGGGCGTCATATTGGGCTGCAGCTACCCCCTTCTGCATTTATCCTATTTTTGCTTTTAAAGATGTGCACCATGTCTTCAGGTCATTTTAACATTAAACCAAACTGGAAATGTATCTGGTGGAAAAACCAATGAAATCACGACTCTGCCTTTTTAACTTTTCAACAATGTTTAATCTCTAATATCCCCCACATTTTCCCTGTCAGACAGACTGATAGCATGTAACTCACATGTCACCTCCGGTCCTCCTTTTTTTATACTATAGTTTCTGCACAGAACACAGGTGCTCAGTCTGAAATCAATGCCAATCCTCTTGCCCCCTGGCTACTACTTGTAGATCTGGAAGACTAGCGTTGGCTTCTGACATGTTTCTTACACCCACTCACATCTTTTAGGATCATGAGAAGTATCAAGGGATAGTGCCTAAGGGTTGAGTTTGGACTGGGAAATTTGCCTTTGCTATAACTCTAATTTTTGGGAAACTGTGGGCTTCTGTATGAGACACTGCACCCAGTGGTCTGTTTTGTTGGTGATCTATGGAATAGATTTTGGAACTCCATGTCAACCTGTGAATGTAGTCACTTTACACACGCTGTACTGAATGTGGATGGACAAACAACCCGACTCTGCACAATTAAAGGCAATCATGATGATGCTGTCATGACTCCATTTAGGTTTTTTAATTGAATTGTTTGAATCAATAAATGTACTGTAAGC

Function

NR:

description
PREDICTED: kelch domain-containing protein 10-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976731.1 False 4422 mRNA 0.46 10 35922982 35938680
TU42471 True 4410 TUCP 0.45 2 35934177 35938667

Neighbor

gene id symbol gene type direction distance location
LOC110522073 LOC106573381 coding upstream 31451 35815461 ~ 35891607 (+)
LOC110522032 LOC106573385 coding upstream 155913 35753339 ~ 35767069 (+)
LOC110521983 LOC106573386 coding upstream 191919 35709824 ~ 35731063 (+)
LOC110521975 LOC106561266 coding upstream 487434 35382733 ~ 35435548 (+)
LOC118966681 NA coding upstream 557308 35362815 ~ 35365674 (+)
LOC110522059 LOC106573371 coding downstream 148456 36087136 ~ 36116437 (+)
rad52 rad52 coding downstream 194797 36133477 ~ 36140940 (+)
LOC110522068 erc1 coding downstream 261621 36200301 ~ 36231196 (+)
lrrn2 LOC106573362 coding downstream 410374 36349054 ~ 36353251 (+)
LOC110522188 LOC106573360 coding downstream 470709 36409389 ~ 36433684 (+)
G37567 NA non-coding upstream 23326 35886307 ~ 35899656 (+)
G37572 NA non-coding upstream 26910 35876235 ~ 35896072 (+)
G37587 NA non-coding upstream 47048 35840691 ~ 35875934 (+)
G37591 NA non-coding upstream 53870 35864417 ~ 35869112 (+)
G37589 NA non-coding upstream 77024 35844965 ~ 35845958 (+)
G37625 NA non-coding downstream 27570 35966250 ~ 35966479 (+)
G37631 lrrc17 non-coding downstream 37712 35976392 ~ 36009860 (+)
G37677 NA non-coding downstream 112901 36051581 ~ 36052174 (+)
G37742 NA non-coding downstream 256337 36195017 ~ 36316123 (+)
G37769 NA non-coding downstream 308996 36247676 ~ 36248425 (+)
G37450 NA other upstream 331055 35591390 ~ 35591927 (+)
LOC110521950 LOC106573403 other upstream 641861 35198681 ~ 35281121 (+)
LOC110521947 LOC106573413 other upstream 1129238 34763838 ~ 34808250 (+)
LOC110521835 LOC106573423 other upstream 1431223 34490120 ~ 34507419 (+)
G37719 LOC106573365 other downstream 202393 36141073 ~ 36143962 (+)
G38652 NA other downstream 903928 36842608 ~ 36883892 (+)
G40149 LOC100136012 other downstream 1832265 37770945 ~ 37771468 (+)
G40150 NA other downstream 1832974 37771654 ~ 37772145 (+)

Expression


Co-expression Network