cax2 (LOC106573379)


Basic Information

Item Value
gene id cax2
gene name LOC106573379
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35939742 ~ 35961413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976727.1
CAACACAGCCCATATAGTGCAGTAATCACTACGCTTCCCATAATTCCATGTTGCCTAATCCGTGAGCGCAGAACTCTCTGCCGTCATACGACAAGGTTGAGCAAGAAGCGCGTGATGGAACCCATTACTATaactgactgagagactgattTGTCTCTCTCCAGCCCACACATgtcaacagacacagagagtcgACGGCGGAGATCAACCATCGACAGTCAAGATTCTCCATGGGACCAAGATCACCGGGGGGGGCACCTCCACGGGCCAATGTGTGATCGGCTGTGTGTGGCCAGCCTGCACTCCGAGCTGAGGGATGCCTGCACCCCCTcgctttccccctccctcctccccggACCAGGTGTCTACACGCCAAAATGTccgtccacacacacacGACTCAGCGCCCATGCCTCTGAGGATGTATGGGAGGACGCCACCAACAAGACCACTATCAGAGCAGAGAACGAAGTGGAGGCCAACAAACTAGCCAACAACTACaggTTTGGATTTAGGAAGTGGAAGAGTCATGTGACGGAGCGTCCCTTTGAGGACAGGTCGGATGTGGTCAAGGAGCTCTATTCAGAGCTCAACGCCATCAAACCACACACAGGTCATCTGATCACCTGTGGAAATGTGgtgtatgtgttgttgtttggcTGGTGGGTGTCTCTGGCCTACCTCCTGGTCAGCATACTGATGTTCATCACCATCATTGGAGTACCATATGGGAAGATGTGCTGGAAGTTGTCTTGGTATTTCTTATGGCCATTTGGGAAGTCCATACAGGAGTTgggaggaggtgtagagaggtGCTGTGGTAGGTTCCCCCACTGTGAGGCCATCCCAGAGGATGTGGAGGACAATGAGGACACTTCTCCCATCCTCCTGCCATCACCCACTGAAGAGCCCATTCCAGACCTGCTACAGGGGCCACCACAGCACAAGCCCTACTGGCACCGTGTGAGCACGTATGTGTGGCTGCTGTTGGGTTATCCTTTGCTGGCTGTGGTTCACTCCCTGGCCTGCCTGATCTCCTGGCTGCTGGTGTTCACCATTCCCGTGGCCAAGATGAATGCCCGGACCCTGGCCTCCATCCTCCTCATGCCCCCTGAGAACCTCTCGGTCTCCACCTGCTCAAAGAGGAAGCCTCAGGGTTGTGAGACTCGAGCGCTGCTGTGCTGCTACCACGCGGTCAACTGGTATTACTACAAATACACTGTGGATGGTATCAATGTGTTTGCTGTCAACCTCCTTCCCCTGGTGATAGTGTCCCTGGTGATTGGCTATGTAGATAAAGGAAACCAGTTTGCCAGCTCTGAGGTCAAGTTTGCCACAGCAGTCGGCTCCATCATTCCTCTGTCCTACTACATCGGCATGGGCATCGCCAGTATCTCTGCCCAGAGCAACTTTGCGGTGGGGGCGGTGGTGAATGCGACCTTTGGCTCCATCACAGAGATGACCTTCTATATCACGGCCCTGCTGAGGGGTCACCGCGCTGGTAATGCCTGTCTGCAGGAGATAGTTAAATCTGCCCTCACCGGCACACTGCTGGGCTGCATCCTCTTCATCCCTGGGATCTGTATGATCATAGGAGGGCTGAGACACAGGGAGCAGAGGTTTAACAGTCGTTCAGCTGGGGTCAGTTCTGCCTTGCTCTTCATCTCTGTGGGAGGTGTGTTTGCCCCCACGCTGTTCTCTAAGGCGTATGGGAACCTGGTGTGTGACAACTGCACCAATTCCACAGGGGACAACACCACCAGCGGGTCCTTCGCCTGCCGCAACTGTCACTACGACCTGAGTGAGAACAACTACACCTTGTTCCACAGCCACATCCAgccaCTGGTGTACACGGTCTCCTTCCTTCTGCCTGTTGCTTACATCATTGGTTTAATCTTCACACTgaagacacactcacacatctACGACATTCACGTTGGCGAGGGACATGTGACCGGCCACCATGGTGCAGTTGTCCACTGGTCTCGGTGGAGAGCTCTGGCCATCCTCATCATAGCCACTCTACTGATGTCAGCCTGCGCTGATGTCACCACTGAACACATCCAGCCCATACTGAGTCAGCCCAATAtctcacagTACTTCATAGGAGTAACCGTGCTGGCCATGGTACCTGAGATCCCGGAGATTGTCAACGGGATCCAGTTTGCCCTTCAGAACAACATCAGTCTGAGCCTGGAGGTGGGCAGCTGCATCGCTGTACAGGTCTGCATGCTCCAGATCCCCCTGCTTGTTTTATTCAACGCCTTCTACGATGTGGGCTTTGTGCTAATATTCTGTGACCTGCATCTGTGGGCCAGCATCTTCAGCGTGGTCCTCGTCAACTACATCTTCATGGATGGCAAATCGGACTACTTCCAAGGCACTGCTCTGGTGGTGGTCTACCTCATCCTCCTGGCATCCTACTTCTTCGCTCCATCGCCAGCTGGCTGCTGAGGGACTAATCTGAGCATCATCTTGTTAACTTTTATATCAGACTAAGTTGCattcaatatgtttttttttacttagTTAAGTTATTTATGGAATTGAATGTTGTGTGCAGACTGCTAGAGAACATCTAGAAATTTCTCTGGACTGCGGTTCAAAAACAATTCTAACAGTTGGTGAAACATTTCAGTGTTGAACACTGTAGTGTCCGCACAGTCTCACAACTCCAGCTAACAACATATATACTGTAACCCTCCCGTTCCACGCTACATTTAGTCACTCATCTGTTTCTGTCAAATCATAATCTACATATTTTCTTAGAACCACTTCTCTGAATTGACTGATTTTACGCACCAACCAAACCTTAGTACCGTACTACCTTGCTGTTTAATATTATTGCTTTTAAAACCATCACTGAGAATGTTCAATAGAAGCTATGCAAACTGGAGGACAACATTCAACTGACAAAGAGGAATGATTAGTCGGTGTACAGTTTGGTAAACTTTACACTgggcctctctccctgtcttaggtttgtttttatttttgtacttGTTTGAAAAGCCCTAGGGTGTTTTCAGCAGCCTCTGTAAAGAAGGTATTTTTGTACATTTAACACGTGTTTAGAAGATGTCAAACTTATTTTGTCAATGCTAAAAGTATTTTAATGCAAaggaataaatacatttaatagcCAAA

Function

NR:

description
low affinity vacuolar monovalent cation/H(+) antiporter-like

GO: NA

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976727.1 True 3147 mRNA 0.50 20 35939742 35961413

Neighbor

gene id symbol gene type direction distance location
LOC110522154 LOC105022174 coding downstream 25230 35892507 ~ 35914512 (-)
LOC110521997 LOC100196677 coding downstream 186394 35750305 ~ 35753348 (-)
LOC110522006 LOC106573384 coding downstream 190143 35742650 ~ 35749599 (-)
LOC110532260 NA coding downstream 244966 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 623550 35313953 ~ 35316192 (-)
armc10 armc10 coding upstream 9918 35971331 ~ 35982887 (-)
LOC110522092 lrrc17 coding upstream 44089 36005053 ~ 36045196 (-)
fam185a fam185a coding upstream 76124 36037537 ~ 36047583 (-)
LOC110522040 LOC106573374 coding upstream 105533 36066946 ~ 36070858 (-)
LOC110532269 LOC106573375 coding upstream 113537 36074950 ~ 36080429 (-)
G38139 LOC106573381 non-coding downstream 48083 35888587 ~ 35891659 (-)
G38126 NA non-coding downstream 76280 35862825 ~ 35863462 (-)
G38059 NA non-coding downstream 197239 35742286 ~ 35742503 (-)
G38050 NA non-coding downstream 204753 35734776 ~ 35734989 (-)
G38224 NA non-coding upstream 145191 36106604 ~ 36107897 (-)
G38229 NA non-coding upstream 146985 36108398 ~ 36108872 (-)
G38269 NA non-coding upstream 229750 36191163 ~ 36191567 (-)
G38223 NA non-coding upstream 265289 36226702 ~ 36231191 (-)
G38045 LOC106573386 other downstream 217686 35721440 ~ 35722056 (-)
G37976 NA other downstream 356134 35583292 ~ 35583608 (-)
G37907 NA other downstream 498414 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 661737 35273709 ~ 35278005 (-)
G36196 NA other downstream 1558510 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 408681 36370091 ~ 36409064 (-)
G38855 NA other upstream 547125 36508538 ~ 36510829 (-)
G40079 NA other upstream 1755127 37716540 ~ 37717033 (-)
G40732 NA other upstream 2163867 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2226075 38187488 ~ 38191736 (-)

Expression


Co-expression Network