LOC110522040 (LOC106573374)


Basic Information

Item Value
gene id LOC110522040
gene name LOC106573374
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36066946 ~ 36070858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600111.2
TGAACTACAGAACCTTCAGGCTCAGCATCGGGACCAGCACCAGCGGTAGCCCAACTCCAGAACCCACAACCACCACTAACACTAGCTCAAAGATTACCAGTTCAAGAATTTGGACCAACTCTTCCAGCTCAAGCAGCAAAACTCCAGCAACCACAACTCCAGCAACCACAACCTCCATAAGTTCCAGTTCAAGGACCACCAGTATCAGCATCAGTCCTGAGACAAAGTCTGCCCAAAAGCTAGAACCCAGCACAACAACTACCAGACCTGGCCTAAAGCTTAAACCTGAACGTAAGCCTAAACCTGGCACAAAGCCCAAACCAGACCCAATACCTATTCCACACCAAACACCTAAACCTGGACCAAGACCAAAGCCTGTGCTGAAGCCCAGACCTGCTCCAAAGCCTTGGCCCAAAACCACCACCCAAGGTCCAAGGACCACTTCCTCCACACCTAGCCCCAAGACATCCAATAGCCAAAGGACTATGACTGACCCCAGCCCACAAACGGCCACAAGCCCTGGCTCAAGAACTACAAGACCTAACCAACAAACTACCCTCAGCTCTAGCGCAAAAATCATCTCTAGAACTAGCCTGAAAACATCCACTAGCCCTGTCACAATGACCACTACTATCGCCAGTCTAAAAAAGACCAGCTCAAGGCAACAATTTAGCACAAGGCCTAGCCCCAAAACTAGCACTACTAGTCCCATTCCATTGGCCAACTCTAACCATAGCCCTACTACCACCAGCCCTGACACCCCTACTCCCAGCCCCAACTCCCCTACCCCCAGCCCCATACCGGAGTCTTCCACCACCAGTGCGAGAGAACTGCGTGTGAAGACCAGCCAGGTATCTGCTAGTCTGAATGACACAAAGGATACAAGCGGAGGGCCAAAGGTTTCTCGAGGAGGGCATCCAAAGGTCCGTCCTGGGTTAAACCTGCTCACAGAAAAGGAGCAGGTAGGCAGCAAGACTAACAGGACGGAGAACCAGCCTCAAAGCCCTGCACAGATTTCACCAGGAGTTACCATGGCACCCAGAGACTGCTCTGACCACATGGCCAGGGGGGATAGGAATAGCAGAGTCTACCAAGTGACCCCTGACCCTAAGAACAGAACCATTGCAGTGTTCTGTGACATGGAGTCTCATGGCGGAGGGTGGACCGTCATTCAGCTCCGTCAGGATGGCAGTGTGGACTTCAACCGGACCTGGGCTGAATACCGGACAGGCTTTGGTGACCTGATGGTTGGGGAGTTCTGGCTGGGCAACGACCACATCCACCTGCTGACACGAAACAGGGTGATGGTCCTTAGGGTGGAGCTGGAGGACTTTAACGGCATGATGGAGTACGCAGAGTACAGGCTCTTCCGTGTGGCTGGCGAGCGGCTACGCTACCGCCTGTCTGTGGGTGGGTACTCGGGCACGGCAGGAGATGCACTTCAATTTAGCAAGAGTTACGACCACAACAACAGGTTCTTTACGACTCCTGACAGGGACTATGACCGCTACCCTTCAGGGAACTGTGGGGCCTACTACAGCTCAGGCTGGTGGTTTGACGCCTGCATGGCTTCCAACCTCAACGGGAGATATTATGTGGGAAAATACAAAGGGGTGCGGAACGGAATCTACTGGGGGACGTGGCATAACATATCCACAGAGTACTACCCGACTAATGACAGACAATCTTTCAAGACTGTCAGAATGATGATCAGGCCAAGGGGCTATGCAAAGTGATCTACGGCTGGCTCCTCGGTTGGCGTTCTCAGCTGTTGCAATTCTCAAATAGGGGGGCCGGGGACCCCTATGAGGCCTCCGAGATTTTCAATGGGTCCATGACAAAAGCAGGAAAAAGCAGAACAAAAAATTAAAAATACGATTTTTTTAGGGAGGAGCACTGTTTGATACGCAAATGGAAACATTCAGATTGTACTGCTGATTCATATTTTGGGGGTTTATAATGCCTTTTGTTTAACAAGCAATTTTAATATATTCCATCATTTCATTTAATCTTTCAAATATTAAATCTCTGATTCAGGCGGGTCAACAACACCTAAATCTTCTTAATTTCTTGATAAATATTAGTGGGCCTCGGAAAAGCCTGCTCTGTTGGTAAAATACTGCCACTTAGTGGTCTGAAACGAAACAACATGGTTTATGGTTTCAAATGGAACACTCAAACTGTGGAAAAGATGTTCAGAGTTCCTGAAGTAATTTATAAGATGTCTTCTTGTTATCTATGTAAGGTTACAGTGTGAAAGTATTGTTGGAGAACGGTTTCATAGAAGTCTTTCTCCTGTGACGAGAAAGAGAAATACTCCTTGAGGAGGGTAATGAAATTGTACTGAAATTGTACTGGAATGATTGACTGACGATTGAttgttgtaatgtttttttattcTCAGTATTTTTTACGGGAAAAATTAAATGAGGTCAATAAAACATA

Function

NR:

description
PREDICTED: mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600111.2 True 2445 mRNA 0.48 2 36066946 36070858

Neighbor

gene id symbol gene type direction distance location
fam185a fam185a coding downstream 19363 36037537 ~ 36047583 (-)
LOC110522092 lrrc17 coding downstream 34767 36005053 ~ 36045196 (-)
armc10 armc10 coding downstream 84059 35971331 ~ 35982887 (-)
cax2 LOC106573379 coding downstream 105533 35939742 ~ 35961413 (-)
LOC110522154 LOC105022174 coding downstream 152434 35892507 ~ 35914512 (-)
LOC110532269 LOC106573375 coding upstream 4092 36074950 ~ 36080429 (-)
tmem60 LOC106573373 coding upstream 48413 36119271 ~ 36120989 (-)
LOC110522098 LOC106573370 coding upstream 50812 36121670 ~ 36131381 (-)
LOC110522050 LOC106573365 coding upstream 70193 36141051 ~ 36189706 (-)
LOC110522124 fbxl14 coding upstream 160629 36231487 ~ 36234308 (-)
G38119 NA non-coding downstream 123679 35942686 ~ 35943267 (-)
G38147 NA non-coding downstream 124342 35942360 ~ 35942604 (-)
G38139 LOC106573381 non-coding downstream 175287 35888587 ~ 35891659 (-)
G38224 NA non-coding upstream 35746 36106604 ~ 36107897 (-)
G38229 NA non-coding upstream 37540 36108398 ~ 36108872 (-)
G38269 NA non-coding upstream 120305 36191163 ~ 36191567 (-)
G38223 NA non-coding upstream 155844 36226702 ~ 36231191 (-)
G38314 NA non-coding upstream 209490 36280348 ~ 36281267 (-)
G38045 LOC106573386 other downstream 344890 35721440 ~ 35722056 (-)
G37976 NA other downstream 483338 35583292 ~ 35583608 (-)
G37907 NA other downstream 625618 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 788941 35273709 ~ 35278005 (-)
G36196 NA other downstream 1685714 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 299236 36370091 ~ 36409064 (-)
G38855 NA other upstream 437680 36508538 ~ 36510829 (-)
G40079 NA other upstream 1645682 37716540 ~ 37717033 (-)
G40732 NA other upstream 2054422 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2116630 38187488 ~ 38191736 (-)

Expression


Co-expression Network