LOC110522098 (LOC106573370)


Basic Information

Item Value
gene id LOC110522098
gene name LOC106573370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36121670 ~ 36131381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522098
ACAACACGGGGGCGAGCATGCATGCTCATGGAATGACTCCCGCAGCATAGGTCGCTGGCGCACCCCACATCTGCACCCAAATGGCTGTTTGGTCAGTGCAGACTGGGAATCAACAATGAGATAGACTATGGTGTTTATTGCTAATAGGCTATACATCAATGCTAGTGATCATCCATATATGATATCCATATCATTATATTATAAGCAACACGATCAGGAGAGAGAACGATGCTGGATGGACTCCGTCGGAGACACAGCTCTCGCCCTTCCCCCCGACCCCTGTCACTCAACTTCACCACCTTCTCAGCCCCACCCCCAAGCCCTGATATTGACAGCAATCATCATCCAATCAGAAGGACTCTACACAGGCTGAAGTTGATGAGCTCCCCCAGTCTCAGTGAACTGGGAAAGAGTGAGAAGGGATCaccggaggagagaggagagaaacagaagagggCTGGGGCCAACGCTACCTGGAACAGcATCCACAATGCTGTCATTGCCGTCTTCCAGAAGAAAGGTCTGTCTGACAATGAACTCTATGTCCTCAACGAAGGTGTCAGATACCTATTGAAAACCGAACTGGGGTCGTTTTTCACAGAATACCTCCAGAACCAGTTGCTGACAAAGGGCATGGTCATTCTACGGGACAAAATAAGATTCTACGAAGGTCAGAAGTCACTGGACTCTCTGGCAGAGACATGGGACTTTTTCTTCTGTGATGTTCTCAATACGCTGCAGGCCATCTTTCACCCAGTACAGGGTAAGGAGCCCAATGTGAGACAGCTGGCTCTGCTCCACTTCAGGAACACCATAGTTCTGAGTGTGAAGCTGGAGGACGCTCTGTCTCGGCCCCGCGCCCGCATTCCCCCCTCCGTCACACAGATGCTGCTTATACTGCAGggtgtCCATGAATCGCGGGGTGTGAGTGAGGACTACCTGCGTCTGGAGTCTCTGGTCCAGAGGGTGGTCTCTCCTTACCTGGGCACCCACGGTCTCTACTCTGGAGATGGCAGCGTGGCACACTGCTCTTGTGTGCTGGAGAAGCGTTTGCAGTGGTGCTGGCCTAAGCAGCCTGTGGACCAGCCATCTAAGAACCCTGTGGTCCGTTCTAAGAGTTACAACATCCCTCTCCTCCTGACGCCCGTGGCAGAGTATGACCCTGATGCCAGCTCGGTGGGCAGTGGGGGCATCCGACGCCACTCTGCCTGTGAGATCATCTCCTGCCTGGAGGAACAGGGGCTGGCCTACGCTGACATAGCCTCCAGGTCCGACGCATCCACCTCCAGCGCCTCTGCTAACAGGCTCTGTGTGGTTCCACAGTTCAGAGGAACCATggagtctcctctcccctccccctccatcctccccctccacctgCACTCCCCAGGACCCCTCCATGGGACGGAGGCAACAATGACCCTTACGGACATGGACAAGGcagccccctcctctccactcagcgGATCCTCCAGCCCGGAGACCGTCATTGGGCAGGTGCTGGACTCCCTGGACTTAGATTCAGATGGGATATTCATAGAATTCTGCTCAGAGTCAATGAGATATGGTCGGGAGATTAGGCAGAGCACTGAGTAAATGGAATCATGGTTAGCTTGCCCTCCCCAAATATCTTATCTTAGACATTAgggggaaaatgctaaactgaccttagatcagtggcTAGGCGAGAGGCAATCTAGACCTAAAAAGATGGTTAAGTGCACTCCATACTTCTCCCCACAAGAGGCCTCTTTTTAGTCAACATTTACTTAGAGAAAAAACTAACTTTTCTAAGCATTTGATTAGATCTGAATATATCTGCTTTTTTGGGATGCTTATGTTTTGCGTGTTTTGAAACTTGACTCTCACCACTATGATGCCATACCTTGTAGGCCCTTGGATGTGGGCCCTTGGATTGTGTCTGGGTTTTCTTCTACAAAACTTAGAGCACTGCAGTTACCATAAAATTAAAAGATAAAAGTAGCTTTTGGAGTAAATACACTATGTGAATGTAATTTGGTCACATCTTGCTTCTCATTCTAAGAACCTGGCTTGTCCAATCTGTG

Function

NR:

description
PREDICTED: proline-rich protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522098 True 2066 mRNA 0.51 11 36121670 36131381

Neighbor

gene id symbol gene type direction distance location
tmem60 LOC106573373 coding downstream 681 36119271 ~ 36120989 (-)
LOC110532269 LOC106573375 coding downstream 41241 36074950 ~ 36080429 (-)
LOC110522040 LOC106573374 coding downstream 50812 36066946 ~ 36070858 (-)
fam185a fam185a coding downstream 74087 36037537 ~ 36047583 (-)
LOC110522092 lrrc17 coding downstream 89491 36005053 ~ 36045196 (-)
LOC110522050 LOC106573365 coding upstream 9670 36141051 ~ 36189706 (-)
LOC110522124 fbxl14 coding upstream 100106 36231487 ~ 36234308 (-)
LOC110522087 NA coding upstream 129807 36261188 ~ 36264106 (-)
LOC110522167 LOC106573363 coding upstream 159325 36290706 ~ 36322277 (-)
LOC110522187 LOC106573361 coding upstream 238710 36370091 ~ 36409064 (-)
G38229 NA non-coding downstream 12798 36108398 ~ 36108872 (-)
G38224 NA non-coding downstream 13773 36106604 ~ 36107897 (-)
G38119 NA non-coding downstream 178403 35942686 ~ 35943267 (-)
G38147 NA non-coding downstream 179066 35942360 ~ 35942604 (-)
G38269 NA non-coding upstream 59782 36191163 ~ 36191567 (-)
G38223 NA non-coding upstream 95321 36226702 ~ 36231191 (-)
G38314 NA non-coding upstream 148967 36280348 ~ 36281267 (-)
G38345 NA non-coding upstream 200778 36332159 ~ 36333002 (-)
G38045 LOC106573386 other downstream 399614 35721440 ~ 35722056 (-)
G37976 NA other downstream 538062 35583292 ~ 35583608 (-)
G37907 NA other downstream 680342 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 843665 35273709 ~ 35278005 (-)
G36196 NA other downstream 1740438 34341562 ~ 34381232 (-)
G38855 NA other upstream 377157 36508538 ~ 36510829 (-)
G40079 NA other upstream 1585159 37716540 ~ 37717033 (-)
G40732 NA other upstream 1993899 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2056107 38187488 ~ 38191736 (-)

Expression


Co-expression Network