LOC110522087


Basic Information

Item Value
gene id LOC110522087
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36261188 ~ 36264106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600184.2
GTAAGCAGACAGACAACGCCCCAATGCTTGTCCACAactgttcagtcagtcagtgtgtgtatcAACATGGCAGAGGCAACTTTGGGTCAGGATCCCTTCTGCTGTTCAATCTGTCTGGATGTACTGAAGGATCCAGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGTATTAAGGGCTGCTGGGATCAGGAAGATCTGAAAGGTGTCTACAGCTGTCCACTGTGCATGGAAAGCTTCATCCCAAGACCTGTTTTGAGGAAAAACATCTTATTGGTTGAATTAAtggagaaacagaagaagacaggATTAAAATCTGCTCCTCCAGCTCTCTGTTATGCTGGACCTAGAGATGTGGAGTGTGATTTCTGCACTAGGAGGAAACTCAAAGCTGTCAAGTCCTGCCTGGTGTGTCTGGCAtcttactgtgagactcacctcCAGCCTCACTTTGAATCCCCTGCCTTTCAGAAGCACAAGCTGGTCAAAGCCTCCACACAACTCCAGGAGAAGATCTGCTCTCATCATGACAAACCACTGGAGGTTTACTGCCGTACCGATCAGCAGTGTATCTGTTATCTGTGTACAATGAATGAACATAAAGGCCATGATACAGCTGCAGCAGAAAGGACTGAGAAACAGAAACAGTTGGTAGAGAATCAGCAGAAATCCCAGGAGAGAATCCAgcagaaagagaaggagatgcAGGAGCTGAGACAGGCTGTGGTCTCTCTGAAGCTCTCTGCACAGGTAGCGGTGGAGGACAGTGAGAGGATTTTTACTGAGCTGATCTGTTCCATTGAAAGAAGGAACTCTGAGGTGAAGCAGCAGATAACAGCCCAGGAAAATGCTGAAGTGAGTCGGGCTAAAAGGCAGCTGGAGCAGCTGGAGCAGGAGATAGCTGAGCTGAGGAGGAGAGATGCTGAGCTGGAGCAGCTTtcacacacagaggatcacatCCATTTCTTCCAGagttttcagtctctctgtgtcccccctGGATCTGATGCCTTACCCAGCATATCTGTCAATCCACACATATCTTTTCATTTTGTGAAGAATTTTGTATCTGAGGTGACAGAACAACTAGAGGATATCTGCAAGAAGGAAATTGCCAAACTATCATGGGAAGCACCTCCCTCTGACTACTTCATGGATGCCATTCCACATACTTCTTATTACAATTCCAACCAATTGGCAGGGCGGAGACCCAGCCCTCGCTGGATAACCCAACAACAATATTTTCAGAACAAGCAAGCGACCTTCAGCACTGTGAGGCCCAATGTGTCTCACATGGTGACCCCTCATCGCATGGCCGCCCAGGCTGCACCTGCTGTAACCCCAGTGCACATGCCTCAGTACAAGTATGCTGCAGGAGTGAGCAAGCCTTCATACATTCATACACTTCCCCAGGTTGTTAAGCAGCAGCCTGCTGTCCCTGTGCAGGAGGACCAGGAGCCTCTGACTGCCTCCAAGCTggctgctgctcctcctcaggAACAGAAGGAAATGCTGGGTCAACGCCTCTACCCGCTCATCCAGAACATGCACCCCAGTCTGGCAGAAGATCACTGGCATGTTGCTGGAGATTGACAACTCTGAGCTGCTCTACATGCTGGAGTCTCCAGAGTGTCTCCGCTCCAAGGTGGATGAAGCTGTGACTGTGCTGCATGCTCACCAGGCCAAACAGGCAACAATGAGACAAGAAAAACTAAAGAAAAGGAAATAATTTGATTCAG

Function

NR:

description
tripartite motif-containing protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600184.2 True 1742 mRNA 0.49 6 36261188 36264106

Neighbor

gene id symbol gene type direction distance location
LOC110522124 fbxl14 coding downstream 26880 36231487 ~ 36234308 (-)
LOC110522050 LOC106573365 coding downstream 71482 36141051 ~ 36189706 (-)
LOC110522098 LOC106573370 coding downstream 129807 36121670 ~ 36131381 (-)
tmem60 LOC106573373 coding downstream 140199 36119271 ~ 36120989 (-)
LOC110532269 LOC106573375 coding downstream 180759 36074950 ~ 36080429 (-)
LOC110522167 LOC106573363 coding upstream 26600 36290706 ~ 36322277 (-)
LOC110522187 LOC106573361 coding upstream 105985 36370091 ~ 36409064 (-)
LOC100750228 irf-7 coding upstream 275691 36539797 ~ 36550002 (-)
LOC118966750 NA coding upstream 376949 36641055 ~ 36641109 (-)
ldlrad3 LOC106573355 coding upstream 448758 36712864 ~ 36827281 (-)
G38223 NA non-coding downstream 29997 36226702 ~ 36231191 (-)
G38269 NA non-coding downstream 69621 36191163 ~ 36191567 (-)
G38229 NA non-coding downstream 152316 36108398 ~ 36108872 (-)
G38224 NA non-coding downstream 153291 36106604 ~ 36107897 (-)
LOC110522092 lrrc17 non-coding downstream 215992 36005053 ~ 36045196 (-)
G38314 NA non-coding upstream 16242 36280348 ~ 36281267 (-)
G38345 NA non-coding upstream 68053 36332159 ~ 36333002 (-)
G38369 NA non-coding upstream 97580 36361686 ~ 36361956 (-)
G38370 NA non-coding upstream 98108 36362214 ~ 36362415 (-)
G38045 LOC106573386 other downstream 539132 35721440 ~ 35722056 (-)
G37976 NA other downstream 677580 35583292 ~ 35583608 (-)
G37907 NA other downstream 819860 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 983183 35273709 ~ 35278005 (-)
G36196 NA other downstream 1879956 34341562 ~ 34381232 (-)
G38855 NA other upstream 244432 36508538 ~ 36510829 (-)
G40079 NA other upstream 1452434 37716540 ~ 37717033 (-)
G40732 NA other upstream 1861174 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1923382 38187488 ~ 38191736 (-)

Expression


Co-expression Network